Project measure / variable:   Graham1   CD4_brain_d7

ID, description, units MPD:63329   CD4_brain_d7   percentage of CD3+ T cells that are CD4+ in brain, post infection   [%]  day 7  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in brain, post infection day 7



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means32.638   %
Median of the strain means30.667   %
SD of the strain means± 9.9691
Coefficient of variation (CV)0.3054
Min–max range of strain means19.657   –   47.3   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 1192.628 298.157 3.7252 0.0417
Residuals 10 800.3873 80.0387


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 30.533 14.97   3 8.6428 0.4903 21.2, 47.8 -0.21
RIX:CC(005 x 001) m 30.667 4.1041   3 2.3695 0.1338 27.0, 35.1 -0.2
RIX:CC(017 x 004) m 19.657 9.0517   3 5.226 0.4605 9.97, 27.9 -1.3
RIX:CC(024 x 023) m 47.3 8.1902   3 4.7286 0.1732 38.5, 54.7 1.47
RIX:CC(041 x 012) m 35.033 3.2005   3 1.8478 0.0914 31.8, 38.2 0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 30.5333 5.1652 42.0422 19.0245
RIX:CC(005 x 001) m 30.6667 5.1652 42.1755 19.1578
RIX:CC(017 x 004) m 19.6567 5.1652 31.1655 8.1478
RIX:CC(024 x 023) m 47.3 5.1652 58.8088 35.7912
RIX:CC(041 x 012) m 35.0333 5.1652 46.5422 23.5245




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA