Project measure / variable:   Graham1   clin_score_d14

ID, description, units MPD:63324   clin_score_d14   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 14  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 14

RIX:CC(005 x 001)RIX:CC(017 x 004)RIX:CC(004 x 011)RIX:CC(024 x 023)RIX:CC(041 x 012) score 0.00.51.01.52.02.53.0femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.2   score
Median of the strain means0.0   score
SD of the strain means± 0.44721
Coefficient of variation (CV)2.2361
Min–max range of strain means0.0   –   1.0   score
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 3 3.2727 1.0909 3.2727 0.0452
Residuals 18 6.0 0.3333


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
RIX:CC(004 x 011) m 0.0 0.0   6 0.0 None -0.45
RIX:CC(005 x 001) m 1.0 1.4142   4 0.70711 1.4142 1.79
RIX:CC(017 x 004) m 0.0 0.0   6 0.0 None -0.45
RIX:CC(024 x 023) m 0.0 0.0   1   0.0 None -0.45
RIX:CC(041 x 012) m 0.0 0.0   6 0.0 None -0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.2357 0.4952 -0.4952
RIX:CC(005 x 001) m 1.0 0.2887 1.6065 0.3935
RIX:CC(017 x 004) m 0.0 0.2357 0.4952 -0.4952
RIX:CC(041 x 012) m 0.0 0.2357 0.4952 -0.4952




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA