Project measure / variable:   Graham1   clin_score_d13

ID, description, units MPD:63323   clin_score_d13   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 13  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 13



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.3   score
Median of the strain means0.0   score
SD of the strain means± 0.44721
Coefficient of variation (CV)1.4907
Min–max range of strain means0.0   –   1.0   score
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 3 0.8182 0.2727 4.9091 0.0115
Residuals 18 1.0 0.0556


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 0.0 0.0   6 0.0 None -0.67
RIX:CC(005 x 001) m 0.5 0.57735   4 0.28868 1.1547 0.45
RIX:CC(017 x 004) m 0.0 0.0   6 0.0 None -0.67
RIX:CC(024 x 023) m 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.57
RIX:CC(041 x 012) m 0.0 0.0   6 0.0 None -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.0962 0.2022 -0.2022
RIX:CC(005 x 001) m 0.5 0.1179 0.7476 0.2524
RIX:CC(017 x 004) m 0.0 0.0962 0.2022 -0.2022
RIX:CC(041 x 012) m 0.0 0.0962 0.2022 -0.2022




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA