Project measure / variable:   Graham1   clin_score_d11

ID, description, units MPD:63321   clin_score_d11   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 11  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 11

RIX:CC(024 x 023)RIX:CC(005 x 001)RIX:CC(017 x 004)RIX:CC(004 x 011)RIX:CC(041 x 012) score -0.10.00.10.20.30.40.50.60.70.80.91.0femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.26429   score
Median of the strain means0.0   score
SD of the strain means± 0.36735
Coefficient of variation (CV)1.39
Min–max range of strain means0.0   –   0.75   score
Mean sample size per strain7.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 3.2462 0.8116 10.8678 < 0.0001
Residuals 33 2.4643 0.0747


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
RIX:CC(004 x 011) m 0.0 0.0   9 0.0 None -0.72
RIX:CC(005 x 001) m 0.57143 0.53452   7 0.20203 0.9354 0.84
RIX:CC(017 x 004) m 0.0 0.0   9 0.0 None -0.72
RIX:CC(024 x 023) m 0.75 0.5   4 0.25 0.6667 1.32
RIX:CC(041 x 012) m 0.0 0.0   9 0.0 None -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.0911 0.1853 -0.1853
RIX:CC(005 x 001) m 0.5714 0.1033 0.7816 0.3613
RIX:CC(017 x 004) m 0.0 0.0911 0.1853 -0.1853
RIX:CC(024 x 023) m 0.75 0.1366 1.028 0.472
RIX:CC(041 x 012) m 0.0 0.0911 0.1853 -0.1853




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA