Project measure / variable:   Graham1   clin_score_d11

ID, description, units MPD:63321   clin_score_d11   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 11  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 11



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.26429   score
Median of the strain means0.0   score
SD of the strain means± 0.36735
Coefficient of variation (CV)1.39
Min–max range of strain means0.0   –   0.75   score
Mean sample size per strain7.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 3.2462 0.8116 10.8678 < 0.0001
Residuals 33 2.4643 0.0747


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 0.0 0.0   9 0.0 None -0.72
RIX:CC(005 x 001) m 0.57143 0.53452   7 0.20203 0.9354 0.84
RIX:CC(017 x 004) m 0.0 0.0   9 0.0 None -0.72
RIX:CC(024 x 023) m 0.75 0.5   4 0.25 0.6667 1.32
RIX:CC(041 x 012) m 0.0 0.0   9 0.0 None -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.0911 0.1853 -0.1853
RIX:CC(005 x 001) m 0.5714 0.1033 0.7816 0.3613
RIX:CC(017 x 004) m 0.0 0.0911 0.1853 -0.1853
RIX:CC(024 x 023) m 0.75 0.1366 1.028 0.472
RIX:CC(041 x 012) m 0.0 0.0911 0.1853 -0.1853




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA