Project measure / variable:   Graham1   clin_score_d8

ID, description, units MPD:63318   clin_score_d8   clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection   [score]  day 8  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Graham1 - clinical score (0=healthy, 1=lethargic, 2=altered gait, 3=no movement, 4=moribund), post infection day 8



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.2   score
Median of the strain means0.0   score
SD of the strain means± 0.38809
Coefficient of variation (CV)1.9405
Min–max range of strain means0.0   –   0.88889   score
Mean sample size per strain9.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 5.4222 1.3556 30.5 < 0.0001
Residuals 40 1.7778 0.0444


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 0.0 0.0   9 0.0 None -0.52
RIX:CC(005 x 001) m 0.11111 0.33333   9 0.11111 3.0 -0.23
RIX:CC(017 x 004) m 0.0 0.0   9 0.0 None -0.52
RIX:CC(024 x 023) m 0.88889 0.33333   9 0.11111 0.375 1.78
RIX:CC(041 x 012) m 0.0 0.0   9 0.0 None -0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 0.0 0.0703 0.142 -0.142
RIX:CC(005 x 001) m 0.1111 0.0703 0.2531 -0.0309
RIX:CC(017 x 004) m 0.0 0.0703 0.142 -0.142
RIX:CC(024 x 023) m 0.8889 0.0703 1.0309 0.7469
RIX:CC(041 x 012) m 0.0 0.0703 0.142 -0.142




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA