Project measure / variable:   Peters1   PT

ID, description, units MPD:6226   PT   prothrombin time (PT)   [s]  
Data set, strains Peters1   inbred w/CC7   43 strains     sex: both     age: 10wks
Procedure coagulation test
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  STRAIN COMPARISON PLOT
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Peters1 - prothrombin time (PT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested42 strains43 strains
Mean of the strain means10.5   s 10.4   s
Median of the strain means10.4   s 10.4   s
SD of the strain means± 0.662 ± 0.555
Coefficient of variation (CV)0.0632 0.0533
Min–max range of strain means9.54   –   12.3   s 9.51   –   12.1   s
Mean sample size per strain10.8   mice 11.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0105 0.0105 0.0137 0.907
strain 41 249.2464 6.0792 7.8971 < 0.0001
sex:strain 41 83.0718 2.0261 2.632 < 0.0001
Residuals 870 669.7289 0.7698


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.3 1.02   15 0.264 0.0991 8.57, 12.5 -0.25
129S1/SvImJ m 10.5 0.544   10 0.172 0.0516 9.88, 11.4 0.16
A/J f 10.5 1.23   11 0.372 0.118 9.29, 13.6 0.05
A/J m 10.6 1.09   12 0.315 0.103 9.81, 13.0 0.34
AKR/J f 9.73 0.942   10 0.298 0.0968 9.07, 12.3 -1.11
AKR/J m 9.73 0.682   10 0.216 0.0701 9.04, 11.5 -1.23
BALB/cByJ f 10.6 0.186   9 0.0619 0.0175 10.4, 11.0 0.2
BALB/cByJ m 10.7 1.1   12 0.316 0.102 9.14, 12.3 0.52
BALB/cJ m 9.98 0.561   5 0.251 0.0563 9.08, 10.5 -0.78
BTBR T+ Itpr3tf/J f 9.64 0.53   12 0.153 0.055 8.55, 10.3 -1.25
BTBR T+ Itpr3tf/J m 10.2 1.14   12 0.329 0.112 9.35, 13.5 -0.38
BUB/BnJ f 9.89 0.586   14 0.157 0.0592 9.28, 11.3 -0.87
BUB/BnJ m 9.77 0.541   10 0.171 0.0554 9.13, 10.8 -1.16
C3H/HeJ f 9.97 0.328   10 0.104 0.0329 9.57, 10.5 -0.75
C3H/HeJ m 11.0 0.489   11 0.147 0.0445 10.2, 11.9 1.06
C57BL/10J f 10.9 1.14   10 0.36 0.105 9.71, 13.4 0.65
C57BL/10J m 10.2 0.447   10 0.141 0.0437 9.59, 11.0 -0.38
C57BL/6J f 10.2 0.556   11 0.168 0.0546 9.4, 11.1 -0.4
C57BL/6J m 10.4 0.399   9 0.133 0.0383 10.0, 11.0 -0.02
C57BLKS/J f 10.3 0.68   11 0.205 0.0662 9.1, 11.4 -0.25
C57BLKS/J m 10.1 0.337   14 0.09 0.0334 9.72, 10.9 -0.56
C57BR/cdJ f 10.1 0.677   13 0.188 0.067 8.89, 11.4 -0.55
C57BR/cdJ m 10.5 0.889   11 0.268 0.0844 9.29, 12.4 0.16
C57L/J f 10.6 0.883   10 0.279 0.0834 8.88, 11.6 0.2
C57L/J m 10.4 0.81   11 0.244 0.078 9.76, 12.4 -0.02
C58/J f 9.64 0.436   10 0.138 0.0453 8.76, 10.3 -1.25
C58/J m 10.2 1.37   14 0.367 0.134 7.93, 13.9 -0.38
CAST/EiJ f 10.8 0.783   13 0.217 0.0725 9.76, 12.4 0.5
CAST/EiJ m 10.2 0.694   9 0.231 0.068 8.91, 10.8 -0.38
CBA/J f 11.2 1.25   10 0.397 0.112 9.75, 13.4 1.11
CBA/J m 10.4 1.12   11 0.337 0.107 8.99, 12.2 -0.02
CE/J f 10.1 1.45   13 0.402 0.143 8.94, 14.2 -0.55
CE/J m 10.4 0.853   11 0.257 0.0819 9.37, 11.8 -0.02
CZECHII/EiJ f 11.5 1.76   11 0.531 0.152 9.85, 14.6 1.56
CZECHII/EiJ m 10.6 1.02   13 0.282 0.0953 8.24, 12.1 0.34
DBA/1J f 10.5 1.32   11 0.398 0.126 9.54, 14.3 0.05
DBA/1J m 11.7 1.1   12 0.317 0.094 9.41, 14.0 2.32
DBA/2J f 11.0 0.307   8 0.108 0.0278 10.6, 11.4 0.81
DBA/2J m 12.1 1.61   16 0.403 0.133 9.6, 15.1 3.04
FVB/NJ f 10.7 0.646   11 0.195 0.0605 9.93, 12.0 0.35
FVB/NJ m 10.7 0.861   11 0.26 0.0803 9.74, 12.4 0.52
I/LnJ f 10.6 0.965   10 0.305 0.0907 9.68, 12.7 0.2
I/LnJ m 10.5 0.523   10 0.165 0.05 9.78, 11.6 0.16
JF1/MsJ f 11.2 0.977   11 0.295 0.087 9.68, 13.3 1.11
JF1/MsJ m 10.3 0.897   14 0.24 0.0873 8.65, 12.2 -0.2
KK/HlJ f 10.2 1.37   13 0.381 0.134 9.36, 14.4 -0.4
KK/HlJ m 10.1 0.843   11 0.254 0.0836 8.82, 11.4 -0.56
LP/J f 9.79 0.432   11 0.13 0.0441 8.86, 10.5 -1.02
LP/J m 10.1 1.04   11 0.313 0.102 9.2, 12.9 -0.56
MA/MyJ f 10.4 1.42   11 0.427 0.135 8.75, 14.0 -0.1
MA/MyJ m 10.5 0.969   10 0.306 0.092 8.94, 12.1 0.16
MOLF/EiJ f 11.7 1.37   10 0.432 0.117 9.85, 14.8 1.86
MOLF/EiJ m 12.0 0.466   9 0.155 0.039 11.1, 12.6 2.86
MSM/MsJ f 11.9 1.3   10 0.411 0.109 10.5, 14.9 2.17
MSM/MsJ m 10.5 0.82   12 0.237 0.0783 9.03, 11.9 0.16
NOD/ShiLtJ f 10.1 0.207   9 0.0689 0.0206 9.72, 10.4 -0.55
NOD/ShiLtJ m 9.99 0.356   10 0.113 0.0356 9.23, 10.4 -0.76
NON/ShiLtJ f 9.67 0.626   11 0.189 0.0648 8.77, 10.6 -1.2
NON/ShiLtJ m 9.92 0.617   12 0.178 0.0622 8.49, 10.6 -0.89
NZB/BlNJ f 10.3 0.702   13 0.195 0.0683 9.6, 12.3 -0.25
NZB/BlNJ m 10.2 1.15   10 0.363 0.113 9.1, 13.0 -0.38
NZW/LacJ f 10.1 0.209   11 0.0631 0.0208 9.8, 10.5 -0.55
NZW/LacJ m 9.51 0.362   10 0.114 0.038 8.75, 10.2 -1.63
PERA/EiJ f 11.7 0.484   10 0.153 0.0415 10.6, 12.3 1.86
PERA/EiJ m 11.3 0.718   10 0.227 0.0633 9.67, 12.3 1.6
PL/J f 10.4 0.763   39 0.122 0.0733 8.94, 12.4 -0.1
PL/J m 10.2 0.962   15 0.248 0.0941 9.1, 12.6 -0.38
PWK/PhJ f 10.5 0.202   10 0.064 0.0193 10.3, 10.8 0.05
PWK/PhJ m 10.8 0.389   15 0.1 0.0359 10.4, 11.8 0.7
RF/J f 9.73 0.506   10 0.16 0.0521 8.89, 10.6 -1.11
RF/J m 10.0 1.1   10 0.349 0.11 8.98, 12.8 -0.75
RIIIS/J f 10.0 0.841   10 0.266 0.0839 8.53, 11.6 -0.71
RIIIS/J m 9.93 0.367   12 0.106 0.0369 9.23, 10.5 -0.87
SEA/GnJ f 9.54 0.717   10 0.227 0.0752 8.72, 10.7 -1.4
SEA/GnJ m 10.5 1.26   10 0.399 0.12 9.27, 12.9 0.16
SJL/J f 10.3 0.39   11 0.117 0.0378 9.59, 11.0 -0.25
SJL/J m 9.91 0.555   10 0.175 0.056 9.12, 11.1 -0.91
SM/J f 9.7 0.363   10 0.115 0.0375 9.26, 10.5 -1.16
SM/J m 9.54 0.63   10 0.199 0.066 8.84, 11.0 -1.57
SPRET/EiJ f 10.6 0.563   8 0.199 0.053 9.58, 11.4 0.2
SPRET/EiJ m 10.5 0.504   10 0.159 0.0478 9.87, 11.7 0.16
SWR/J f 12.3 1.54   9 0.512 0.124 9.84, 14.5 2.77
SWR/J m 10.5 0.755   12 0.218 0.072 8.93, 11.4 0.16
WSB/EiJ f 10.7 0.207   10 0.0654 0.0194 10.2, 10.9 0.35
WSB/EiJ m 10.6 0.505   12 0.146 0.0478 9.42, 11.2 0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.2987 0.2265 10.7433 9.854
129S1/SvImJ m 10.53 0.2775 11.0746 9.9854
A/J f 10.4664 0.2645 10.9856 9.9471
A/J m 10.5775 0.2533 11.0746 10.0804
AKR/J f 9.728 0.2775 10.2726 9.1834
AKR/J m 9.727 0.2775 10.2716 9.1824
BALB/cByJ f 10.6222 0.2925 11.1962 10.0482
BALB/cByJ m 10.7258 0.2533 11.2229 10.2287
BTBR T+ Itpr3tf/J f 9.6425 0.2533 10.1396 9.1454
BTBR T+ Itpr3tf/J m 10.1717 0.2533 10.6688 9.6746
BUB/BnJ f 9.8907 0.2345 10.3509 9.4305
BUB/BnJ m 9.773 0.2775 10.3176 9.2284
C3H/HeJ f 9.968 0.2775 10.5126 9.4234
C3H/HeJ m 10.9909 0.2645 11.5101 10.4717
C57BL/10J f 10.877 0.2775 11.4216 10.3324
C57BL/10J m 10.226 0.2775 10.7706 9.6814
C57BL/6J f 10.1864 0.2645 10.7056 9.6671
C57BL/6J m 10.4222 0.2925 10.9962 9.8482
C57BLKS/J f 10.2736 0.2645 10.7929 9.7544
C57BLKS/J m 10.0879 0.2345 10.5481 9.6276
C57BR/cdJ f 10.1108 0.2433 10.5884 9.6332
C57BR/cdJ m 10.5355 0.2645 11.0547 10.0162
C57L/J f 10.589 0.2775 11.1336 10.0444
C57L/J m 10.3882 0.2645 10.9074 9.869
C58/J f 9.642 0.2775 10.1866 9.0974
C58/J m 10.2321 0.2345 10.6924 9.7719
CAST/EiJ f 10.8031 0.2433 11.2807 10.3255
CAST/EiJ m 10.2022 0.2925 10.7762 9.6282
CBA/J f 11.166 0.2775 11.7106 10.6214
CBA/J m 10.4155 0.2645 10.9347 9.8962
CE/J f 10.11 0.2433 10.5876 9.6324
CE/J m 10.4073 0.2645 10.9265 9.8881
CZECHII/EiJ f 11.5464 0.2645 12.0656 11.0271
CZECHII/EiJ m 10.6492 0.2433 11.1268 10.1716
DBA/1J f 10.4827 0.2645 11.0019 9.9635
DBA/1J m 11.6758 0.2533 12.1729 11.1787
DBA/2J f 11.0375 0.3102 11.6463 10.4287
DBA/2J m 12.1 0.2193 12.5305 11.6695
FVB/NJ f 10.6755 0.2645 11.1947 10.1562
FVB/NJ m 10.7236 0.2645 11.2429 10.2044
I/LnJ f 10.637 0.2775 11.1816 10.0924
I/LnJ m 10.459 0.2775 11.0036 9.9144
JF1/MsJ f 11.2345 0.2645 11.7538 10.7153
JF1/MsJ m 10.2686 0.2345 10.7288 9.8083
KK/HlJ f 10.2354 0.2433 10.713 9.7578
KK/HlJ m 10.08 0.2645 10.5992 9.5608
LP/J f 9.7936 0.2645 10.3129 9.2744
LP/J m 10.1309 0.2645 10.6501 9.6117
MA/MyJ f 10.4491 0.2645 10.9683 9.9299
MA/MyJ m 10.53 0.2775 11.0746 9.9854
MOLF/EiJ f 11.705 0.2775 12.2496 11.1604
MOLF/EiJ m 11.9667 0.2925 12.5407 11.3927
MSM/MsJ f 11.88 0.2775 12.4246 11.3354
MSM/MsJ m 10.4808 0.2533 10.9779 9.9837
NOD/ShiLtJ f 10.0533 0.2925 10.6273 9.4793
NOD/ShiLtJ m 9.993 0.2775 10.5376 9.4484
NON/ShiLtJ f 9.6673 0.2645 10.1865 9.1481
NON/ShiLtJ m 9.9183 0.2533 10.4154 9.4212
NZB/BlNJ f 10.2846 0.2433 10.7622 9.807
NZB/BlNJ m 10.19 0.2775 10.7346 9.6454
NZW/LacJ f 10.0764 0.2645 10.5956 9.5571
NZW/LacJ m 9.505 0.2775 10.0496 8.9604
PERA/EiJ f 11.65 0.2775 12.1946 11.1054
PERA/EiJ m 11.347 0.2775 11.8916 10.8024
PL/J f 10.4092 0.1405 10.685 10.1335
PL/J m 10.2187 0.2265 10.6633 9.774
PWK/PhJ f 10.51 0.2775 11.0546 9.9654
PWK/PhJ m 10.8333 0.2265 11.278 10.3887
RF/J f 9.726 0.2775 10.2706 9.1814
RF/J m 10.011 0.2775 10.5556 9.4664
RIIIS/J f 10.018 0.2775 10.5626 9.4734
RIIIS/J m 9.9333 0.2533 10.4304 9.4362
SEA/GnJ f 9.535 0.2775 10.0796 8.9904
SEA/GnJ m 10.518 0.2775 11.0626 9.9734
SJL/J f 10.2973 0.2645 10.8165 9.7781
SJL/J m 9.908 0.2775 10.4526 9.3634
SM/J f 9.699 0.2775 10.2436 9.1544
SM/J m 9.545 0.2775 10.0896 9.0004
SPRET/EiJ f 10.635 0.3102 11.2438 10.0262
SPRET/EiJ m 10.547 0.2775 11.0916 10.0024
SWR/J f 12.3489 0.2925 12.9229 11.7749
SWR/J m 10.4875 0.2533 10.9846 9.9904
WSB/EiJ f 10.65 0.2775 11.1946 10.1054
WSB/EiJ m 10.56 0.2533 11.0571 10.0629


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.4143 0.1791 10.7658 10.0628
A/J both 10.5219 0.1831 10.8813 10.1625
AKR/J both 9.7275 0.1962 10.1126 9.3424
BALB/cByJ both 10.674 0.1934 11.0537 10.2944
BTBR T+ Itpr3tf/J both 9.9071 0.1791 10.2586 9.5556
BUB/BnJ both 9.8319 0.1816 10.1884 9.4754
C3H/HeJ both 10.4795 0.1917 10.8557 10.1032
C57BL/10J both 10.5515 0.1962 10.9366 10.1664
C57BL/6J both 10.3043 0.1972 10.6913 9.9173
C57BLKS/J both 10.1807 0.1768 10.5277 9.8338
C57BR/cdJ both 10.3231 0.1797 10.6758 9.9704
C57L/J both 10.4886 0.1917 10.8648 10.1124
C58/J both 9.9371 0.1816 10.2936 9.5806
CAST/EiJ both 10.5026 0.1902 10.876 10.1293
CBA/J both 10.7907 0.1917 11.1669 10.4145
CE/J both 10.2586 0.1797 10.6114 9.9059
CZECHII/EiJ both 11.0978 0.1797 11.4505 10.7451
DBA/1J both 11.0793 0.1831 11.4387 10.7199
DBA/2J both 11.5687 0.19 11.9416 11.1959
FVB/NJ both 10.6995 0.1871 11.0667 10.3324
I/LnJ both 10.548 0.1962 10.9331 10.1629
JF1/MsJ both 10.7516 0.1768 11.0985 10.4046
KK/HlJ both 10.1577 0.1797 10.5104 9.805
LP/J both 9.9623 0.1871 10.3294 9.5951
MA/MyJ both 10.4895 0.1917 10.8658 10.1133
MOLF/EiJ both 11.8358 0.2016 12.2314 11.4402
MSM/MsJ both 11.1804 0.1878 11.5491 10.8118
NOD/ShiLtJ both 10.0232 0.2016 10.4188 9.6276
NON/ShiLtJ both 9.7928 0.1831 10.1522 9.4334
NZB/BlNJ both 10.2373 0.1845 10.5995 9.8751
NZW/LacJ both 9.7907 0.1917 10.1669 9.4145
PERA/EiJ both 11.4985 0.1962 11.8836 11.1134
PL/J both 10.3139 0.1333 10.5755 10.0524
PWK/PhJ both 10.6717 0.1791 11.0232 10.3202
RF/J both 9.8685 0.1962 10.2536 9.4834
RIIIS/J both 9.9757 0.1878 10.3443 9.607
SEA/GnJ both 10.0265 0.1962 10.4116 9.6414
SJL/J both 10.1026 0.1917 10.4788 9.7264
SM/J both 9.622 0.1962 10.0071 9.2369
SPRET/EiJ both 10.591 0.2081 10.9994 10.1826
SWR/J both 11.4182 0.1934 11.7979 11.0385
WSB/EiJ both 10.605 0.1878 10.9737 10.2363




  GWAS USING LINEAR MIXED MODELS