Project measure / variable:   CSNA02   bw_d3

ID, description, units MPD:62222   bw_d3   body weight for ethanol study   [g]  day 3  
Data set, strains CSNA02   inbred   18 strains     sex: both     age: 16-39wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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CSNA02 - body weight for ethanol study day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains18 strains
Mean of the strain means23.08   g 27.504   g
Median of the strain means23.198   g 27.405   g
SD of the strain means± 4.869 ± 6.1052
Coefficient of variation (CV)0.211 0.222
Min–max range of strain means15.188   –   37.411   g 18.738   –   44.856   g
Mean sample size per strain5.4   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 948.1733 948.1733 253.0026 < 0.0001
strain 16 8138.1366 508.6335 135.7195 < 0.0001
sex:strain 16 163.7646 10.2353 2.7311 0.0007
Residuals 163 610.8721 3.7477


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.163 2.5651   8 0.90691 0.1107 18.3, 26.8 0.02
129S1/SvImJ m 26.367 1.6033   6 0.65456 0.0608 24.4, 28.6 -0.19
A/J f 21.833 1.74   9 0.57999 0.0797 19.4, 24.7 -0.26
A/J m 25.422 1.2804   9 0.4268 0.0504 24.1, 28.1 -0.34
C57BL/6J f 23.113 1.2311   8 0.43525 0.0533 21.5, 25.0 0.01
C57BL/6J m 28.443 2.0007   7 0.7562 0.0703 26.1, 31.3 0.15
CAST/EiJ f 15.188 1.0063   8 0.35579 0.0663 13.8, 16.6 -1.62
CAST/EiJ m 18.738 1.0211   8 0.36102 0.0545 16.6, 20.0 -1.44
CC002/UncJ f 26.533 0.23094   3 0.13333 0.0087 26.4, 26.8 0.71
CC002/UncJ m 30.9 2.0881   3 1.2055 0.0676 28.5, 32.3 0.56
CC004/TauUncJ f 25.1 0.68191   5 0.30496 0.0272 24.7, 26.3 0.41
CC004/TauUncJ m 30.756 2.2733   9 0.75776 0.0739 26.7, 33.5 0.53
CC006/TauUncJ f 23.6 0.75498   3 0.43589 0.032 22.8, 24.3 0.11
CC006/TauUncJ m 23.767 3.5557   3 2.0529 0.1496 20.1, 27.2 -0.61
CC011/UncJ f 25.9 2.9698   2   2.1 0.1147 23.8, 28.0 0.58
CC011/UncJ m 29.9 0.56569   2   0.4 0.0189 29.5, 30.3 0.39
CC012/GeniUncJ f 20.7 1.3748   3 0.79373 0.0664 19.5, 22.2 -0.49
CC012/GeniUncJ m 23.7 0.51962   3 0.3 0.0219 23.4, 24.3 -0.62
CC025/GeniUncJ f 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.63
CC025/GeniUncJ m 26.3 0.0   1   0.0 0.0 26.3, 26.3 -0.2
CC028/GeniUncJ f 23.967 1.193   3 0.6888 0.0498 22.6, 24.8 0.18
CC028/GeniUncJ m 31.067 3.8423   3 2.2184 0.1237 28.7, 35.5 0.58
CC032/GeniUncJ f 23.233 0.64291   3 0.37118 0.0277 22.5, 23.7 0.03
CC032/GeniUncJ m 29.967 2.1825   3 1.2601 0.0728 27.6, 31.9 0.4
CC041/TauUncJ f 26.011 2.2877   9 0.76257 0.088 22.0, 30.1 0.6
CC041/TauUncJ m 32.078 3.1132   9 1.0377 0.0971 28.4, 36.9 0.75
CC061/GeniUncJ f 21.5 0.28284   2   0.2 0.0132 21.3, 21.7 -0.32
CC061/GeniUncJ m 25.633 1.7616   3 1.0171 0.0687 24.2, 27.6 -0.31
NOD/ShiLtJ f 24.633 2.4969   6 1.0194 0.1014 20.7, 27.8 0.32
NOD/ShiLtJ m 29.217 1.8302   6 0.74718 0.0626 26.9, 31.4 0.28
NZO/HlLtJ f 37.411 2.4897   9 0.8299 0.0665 33.6, 40.3 2.94
NZO/HlLtJ m 44.856 2.7884   9 0.92947 0.0622 41.8, 51.2 2.84
PWK/PhJ f 16.225 0.99103   8 0.35038 0.0611 14.8, 18.2 -1.41
PWK/PhJ m 18.933 1.252   9 0.41733 0.0661 17.0, 20.8 -1.4
WSB/EiJ f 17.325 1.3946   8 0.49308 0.0805 15.2, 19.4 -1.18
WSB/EiJ m 19.025 1.3382   8 0.47312 0.0703 17.0, 20.9 -1.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.1625 0.6844 24.514 21.811
129S1/SvImJ m 26.3667 0.7903 27.9273 24.8061
A/J f 21.8333 0.6453 23.1076 20.5591
A/J m 25.4222 0.6453 26.6964 24.148
C57BL/6J f 23.1125 0.6844 24.464 21.761
C57BL/6J m 28.4429 0.7317 29.8877 26.998
CAST/EiJ f 15.1875 0.6844 16.539 13.836
CAST/EiJ m 18.7375 0.6844 20.089 17.386
CC002/UncJ f 26.5333 1.1177 28.7403 24.3263
CC002/UncJ m 30.9 1.1177 33.107 28.693
CC004/TauUncJ f 25.1 0.8658 26.8095 23.3905
CC004/TauUncJ m 30.7556 0.6453 32.0298 29.4813
CC006/TauUncJ f 23.6 1.1177 25.807 21.393
CC006/TauUncJ m 23.7667 1.1177 25.9737 21.5597
CC011/UncJ f 25.9 1.3689 28.603 23.197
CC011/UncJ m 29.9 1.3689 32.603 27.197
CC012/GeniUncJ f 20.7 1.1177 22.907 18.493
CC012/GeniUncJ m 23.7 1.1177 25.907 21.493
CC028/GeniUncJ f 23.9667 1.1177 26.1737 21.7597
CC028/GeniUncJ m 31.0667 1.1177 33.2737 28.8597
CC032/GeniUncJ f 23.2333 1.1177 25.4403 21.0263
CC032/GeniUncJ m 29.9667 1.1177 32.1737 27.7597
CC041/TauUncJ f 26.0111 0.6453 27.2853 24.7369
CC041/TauUncJ m 32.0778 0.6453 33.352 30.8036
CC061/GeniUncJ f 21.5 1.3689 24.203 18.797
CC061/GeniUncJ m 25.6333 1.1177 27.8403 23.4263
NOD/ShiLtJ f 24.6333 0.7903 26.1939 23.0727
NOD/ShiLtJ m 29.2167 0.7903 30.7773 27.6561
NZO/HlLtJ f 37.4111 0.6453 38.6853 36.1369
NZO/HlLtJ m 44.8556 0.6453 46.1298 43.5813
PWK/PhJ f 16.225 0.6844 17.5765 14.8735
PWK/PhJ m 18.9333 0.6453 20.2076 17.6591
WSB/EiJ f 17.325 0.6844 18.6765 15.9735
WSB/EiJ m 19.025 0.6844 20.3765 17.6735


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.7646 0.5228 25.7968 23.7323
A/J both 23.6278 0.4563 24.5288 22.7268
C57BL/6J both 25.7777 0.501 26.7669 24.7885
CAST/EiJ both 16.9625 0.484 17.9182 16.0068
CC002/UncJ both 28.7167 0.7903 30.2773 27.1561
CC004/TauUncJ both 27.9278 0.5399 28.9939 26.8617
CC006/TauUncJ both 23.6833 0.7903 25.2439 22.1227
CC011/UncJ both 27.9 0.9679 29.8113 25.9887
CC012/GeniUncJ both 22.2 0.7903 23.7606 20.6394
CC028/GeniUncJ both 27.5167 0.7903 29.0773 25.9561
CC032/GeniUncJ both 26.6 0.7903 28.1606 25.0394
CC041/TauUncJ both 29.0444 0.4563 29.9455 28.1434
CC061/GeniUncJ both 23.5667 0.8836 25.3115 21.8219
NOD/ShiLtJ both 26.925 0.5588 28.0285 25.8215
NZO/HlLtJ both 41.1333 0.4563 42.0343 40.2323
PWK/PhJ both 17.5792 0.4703 18.5079 16.6504
WSB/EiJ both 18.175 0.484 19.1307 17.2193




  GWAS USING LINEAR MIXED MODELS