Project measure / variable:   CSNA02   bw_d1

ID, description, units MPD:62220   bw_d1   body weight for ethanol study   [g]  day 1  
Data set, strains CSNA02   inbred   18 strains     sex: both     age: 16-39wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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CSNA02 - body weight for ethanol study day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains18 strains
Mean of the strain means24.005   g 28.638   g
Median of the strain means24.256   g 28.608   g
SD of the strain means± 4.9751 ± 6.0296
Coefficient of variation (CV)0.2073 0.2105
Min–max range of strain means15.263   –   39.122   g 19.125   –   45.9   g
Mean sample size per strain5.4   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1087.1274 1087.1274 233.8964 < 0.0001
strain 16 8124.5476 507.7842 109.2502 < 0.0001
sex:strain 16 199.8926 12.4933 2.6879 0.0008
Residuals 162 752.9599 4.6479


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 24.45 2.5202   8 0.89103 0.1031 20.0, 27.7 0.09
129S1/SvImJ m 27.167 1.5449   6 0.6307 0.0569 24.7, 28.7 -0.24
A/J f 22.6 1.301   9 0.43365 0.0576 21.0, 24.5 -0.28
A/J m 27.044 1.3239   9 0.44131 0.049 25.3, 29.1 -0.26
C57BL/6J f 24.062 1.7623   8 0.62305 0.0732 22.2, 27.4 0.01
C57BL/6J m 30.214 2.2814   7 0.86229 0.0755 27.9, 33.7 0.26
CAST/EiJ f 15.263 0.98986   8 0.34997 0.0649 14.1, 16.9 -1.76
CAST/EiJ m 19.125 1.058   8 0.37405 0.0553 17.1, 20.3 -1.58
CC002/UncJ f 26.233 0.87369   3 0.50442 0.0333 25.5, 27.2 0.45
CC002/UncJ m 30.067 1.4572   3 0.8413 0.0485 28.4, 31.1 0.24
CC004/TauUncJ f 25.88 0.92574   5 0.414 0.0358 24.7, 26.9 0.38
CC004/TauUncJ m 32.556 3.2335   9 1.0778 0.0993 26.7, 36.6 0.65
CC006/TauUncJ f 24.8 1.4   3 0.80829 0.0565 23.8, 26.4 0.16
CC006/TauUncJ m 24.733 3.8004   3 2.1942 0.1537 20.4, 27.5 -0.65
CC011/UncJ f 26.6 2.9698   2   2.1 0.1116 24.5, 28.7 0.52
CC011/UncJ m 30.05 0.35355   2   0.25 0.0118 29.8, 30.3 0.23
CC012/GeniUncJ f 22.4 1.0817   3 0.6245 0.0483 21.5, 23.6 -0.32
CC012/GeniUncJ m 26.3 0.34641   3 0.2 0.0132 26.1, 26.7 -0.39
CC025/GeniUncJ f 19.8 0.0   1   0.0 0.0 19.8, 19.8 -0.85
CC025/GeniUncJ m 26.4 0.0   1   0.0 0.0 26.4, 26.4 -0.37
CC028/GeniUncJ f 25.033 1.3577   3 0.78387 0.0542 23.6, 26.3 0.21
CC028/GeniUncJ m 31.667 3.5852   3 2.0699 0.1132 29.4, 35.8 0.5
CC032/GeniUncJ f 23.6 0.2   3 0.11547 0.0085 23.4, 23.8 -0.08
CC032/GeniUncJ m 31.133 2.8589   3 1.6506 0.0918 28.0, 33.6 0.41
CC041/TauUncJ f 26.9 2.0396   9 0.67987 0.0758 22.5, 30.1 0.58
CC041/TauUncJ m 33.733 3.5036   9 1.1679 0.1039 29.3, 39.2 0.84
CC061/GeniUncJ f 21.95 0.21213   2   0.15 0.0097 21.8, 22.1 -0.41
CC061/GeniUncJ m 27.067 1.0214   3 0.58973 0.0377 25.9, 27.8 -0.26
NOD/ShiLtJ f 26.15 2.9912   6 1.2211 0.1144 21.4, 29.7 0.43
NOD/ShiLtJ m 31.017 2.0074   6 0.81952 0.0647 27.9, 33.8 0.39
NZO/HlLtJ f 39.122 2.4103   9 0.80343 0.0616 34.8, 42.1 3.04
NZO/HlLtJ m 45.9 3.527   9 1.1757 0.0768 39.7, 53.0 2.86
PWK/PhJ f 17.875 1.2959   8 0.45816 0.0725 16.2, 20.3 -1.23
PWK/PhJ m 21.087 1.6991   8 0.60073 0.0806 18.9, 23.6 -1.25
WSB/EiJ f 19.363 1.8007   8 0.63666 0.093 16.3, 21.4 -0.93
WSB/EiJ m 20.225 1.6559   8 0.58546 0.0819 17.9, 22.1 -1.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 24.45 0.7622 25.9552 22.9448
129S1/SvImJ m 27.1667 0.8801 28.9047 25.4286
A/J f 22.6 0.7186 24.0191 21.1809
A/J m 27.0444 0.7186 28.4635 25.6253
C57BL/6J f 24.0625 0.7622 25.5677 22.5573
C57BL/6J m 30.2143 0.8149 31.8234 28.6052
CAST/EiJ f 15.2625 0.7622 16.7677 13.7573
CAST/EiJ m 19.125 0.7622 20.6302 17.6198
CC002/UncJ f 26.2333 1.2447 28.6913 23.7754
CC002/UncJ m 30.0667 1.2447 32.5246 27.6087
CC004/TauUncJ f 25.88 0.9641 27.7839 23.9761
CC004/TauUncJ m 32.5556 0.7186 33.9747 31.1365
CC006/TauUncJ f 24.8 1.2447 27.2579 22.3421
CC006/TauUncJ m 24.7333 1.2447 27.1913 22.2754
CC011/UncJ f 26.6 1.5245 29.6104 23.5896
CC011/UncJ m 30.05 1.5245 33.0604 27.0396
CC012/GeniUncJ f 22.4 1.2447 24.8579 19.9421
CC012/GeniUncJ m 26.3 1.2447 28.7579 23.8421
CC028/GeniUncJ f 25.0333 1.2447 27.4913 22.5754
CC028/GeniUncJ m 31.6667 1.2447 34.1246 29.2087
CC032/GeniUncJ f 23.6 1.2447 26.0579 21.1421
CC032/GeniUncJ m 31.1333 1.2447 33.5913 28.6754
CC041/TauUncJ f 26.9 0.7186 28.3191 25.4809
CC041/TauUncJ m 33.7333 0.7186 35.1524 32.3142
CC061/GeniUncJ f 21.95 1.5245 24.9604 18.9396
CC061/GeniUncJ m 27.0667 1.2447 29.5246 24.6087
NOD/ShiLtJ f 26.15 0.8801 27.888 24.412
NOD/ShiLtJ m 31.0167 0.8801 32.7547 29.2786
NZO/HlLtJ f 39.1222 0.7186 40.5413 37.7031
NZO/HlLtJ m 45.9 0.7186 47.3191 44.4809
PWK/PhJ f 17.875 0.7622 19.3802 16.3698
PWK/PhJ m 21.0875 0.7622 22.5927 19.5823
WSB/EiJ f 19.3625 0.7622 20.8677 17.8573
WSB/EiJ m 20.225 0.7622 21.7302 18.7198


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 25.8083 0.5822 26.9579 24.6587
A/J both 24.8222 0.5082 25.8257 23.8188
C57BL/6J both 27.1384 0.5579 28.2401 26.0367
CAST/EiJ both 17.1938 0.539 18.2581 16.1294
CC002/UncJ both 28.15 0.8801 29.888 26.412
CC004/TauUncJ both 29.2178 0.6013 30.4051 28.0305
CC006/TauUncJ both 24.7667 0.8801 26.5047 23.0286
CC011/UncJ both 28.325 1.0779 30.4536 26.1964
CC012/GeniUncJ both 24.35 0.8801 26.088 22.612
CC028/GeniUncJ both 28.35 0.8801 30.088 26.612
CC032/GeniUncJ both 27.3667 0.8801 29.1047 25.6286
CC041/TauUncJ both 30.3167 0.5082 31.3201 29.3132
CC061/GeniUncJ both 24.5083 0.984 26.4515 22.5652
NOD/ShiLtJ both 28.5833 0.6224 29.8123 27.3544
NZO/HlLtJ both 42.5111 0.5082 43.5146 41.5077
PWK/PhJ both 19.4812 0.539 20.5456 18.4169
WSB/EiJ both 19.7937 0.539 20.8581 18.7294




  GWAS USING LINEAR MIXED MODELS