Project measure / variable:   CSNA02   trial_latency_rev

ID, description, units MPD:62215   trial_latency_rev   latency to initiate trials divided by total number of trials   [s]  reversal  
Data set, strains CSNA02   inbred   10 strains     sex: both     age: 12-14wks
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA02 - latency to initiate trials divided by total number of trials reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means58.74   s 50.49   s
Median of the strain means55.98   s 41.258   s
SD of the strain means± 34.101 ± 29.608
Coefficient of variation (CV)0.5805 0.5864
Min–max range of strain means12.65   –   110.7   s 14.187   –   96.67   s
Mean sample size per strain5.3   mice 4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1823.7559 1823.7559 1.1391 0.2891
strain 9 49480.2826 5497.8092 3.434 0.0013
sex:strain 9 33706.9042 3745.2116 2.3393 0.0215
Residuals 79 126478.3233 1600.9914


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 64.29 33.125   6 13.523 0.5152 21.533, 100.472 0.16
129S1/SvImJ m 71.55 25.224   6 10.298 0.3525 35.223, 101.399 0.71
A/J f 110.7 27.477   6 11.217 0.2482 58.16, 130.266 1.52
A/J m 48.64 43.587   6 17.794 0.8961 10.567, 123.409 -0.06
C57BL/6J f 47.664 35.424   6 14.462 0.7432 14.472, 109.745 -0.32
C57BL/6J m 78.86 58.15   6 23.741 0.7374 24.971, 191.943 0.96
CAST/EiJ f 40.183 15.962   7 6.0331 0.3972 17.382, 64.775 -0.54
CAST/EiJ m 32.195 7.1281   4 3.5641 0.2214 26.688, 42.104 -0.62
CC004/TauUncJ f 19.298 15.43   2   10.911 0.7996 8.387, 30.209 -1.16
CC004/TauUncJ m 96.67 107.8   3 62.25 1.1154 15.854, 219.097 1.56
CC041/TauUncJ f 109.9 51.48   3 29.722 0.4686 68.737, 167.598 1.5
CC041/TauUncJ m 30.305 3.2626   2   2.307 0.1077 27.998, 32.612 -0.68
NOD/ShiLtJ f 36.278 28.671   5 12.822 0.7903 6.6, 66.084 -0.66
NOD/ShiLtJ m 16.389 12.151   5 5.4342 0.7414 6.6, 34.5 -1.15
NZO/HlLtJ f 68.44 41.544   7 15.702 0.6071 11.164, 111.598 0.28
NZO/HlLtJ m 82.21 98.94   4 49.472 1.2036 24.636, 229.975 1.07
PWK/PhJ f 12.65 6.406   6 2.6153 0.5064 5.919, 22.647 -1.35
PWK/PhJ m 14.187 3.9229   6 1.6015 0.2765 7.021, 18.494 -1.23
WSB/EiJ f 78.04 39.662   5 17.737 0.5083 33.532, 120.553 0.57
WSB/EiJ m 33.877 15.202   4 7.601 0.4487 24.064, 56.537 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 64.2915 16.335 96.8055 31.7775
129S1/SvImJ m 71.5503 16.335 104.0643 39.0363
A/J f 110.7148 16.335 143.2288 78.2008
A/J m 48.6402 16.335 81.1542 16.1262
C57BL/6J f 47.6645 16.335 80.1785 15.1505
C57BL/6J m 78.8632 16.335 111.3772 46.3492
CAST/EiJ f 40.1826 15.1233 70.2847 10.0805
CAST/EiJ m 32.195 20.0062 72.0163 -7.6263
CC004/TauUncJ f 19.298 28.293 75.6139 -37.0179
CC004/TauUncJ m 96.67 23.1012 142.6517 50.6883
CC041/TauUncJ f 109.8647 23.1012 155.8464 63.8829
CC041/TauUncJ m 30.305 28.293 86.6209 -26.0109
NOD/ShiLtJ f 36.2782 17.8941 71.8955 0.6609
NOD/ShiLtJ m 16.3894 17.8941 52.0067 -19.2279
NZO/HlLtJ f 68.4354 15.1233 98.5375 38.3333
NZO/HlLtJ m 82.2087 20.0062 122.0301 42.3874
PWK/PhJ f 12.6503 16.335 45.1643 -19.8637
PWK/PhJ m 14.1868 16.335 46.7008 -18.3272
WSB/EiJ f 78.036 17.8941 113.6533 42.4187
WSB/EiJ m 33.877 20.0062 73.6983 -5.9443


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 67.9209 11.5506 90.9118 44.9301
A/J both 79.6775 11.5506 102.6684 56.6866
C57BL/6J both 63.2638 11.5506 86.2547 40.273
CAST/EiJ both 36.1888 12.5395 61.1481 11.2294
CC004/TauUncJ both 57.984 18.2631 94.3357 21.6323
CC041/TauUncJ both 70.0848 18.2631 106.4366 33.7331
NOD/ShiLtJ both 26.3338 12.653 51.519 1.1486
NZO/HlLtJ both 75.3221 12.5395 100.2814 50.3627
PWK/PhJ both 13.4186 11.5506 36.4094 -9.5723
WSB/EiJ both 55.9565 13.4206 82.6695 29.2435




  GWAS USING LINEAR MIXED MODELS