Phenotype measure:   Peters1   Retic

ID, description, units MPD:6217   Retic   reticulocyte differential (percent of total RBC)   [%]
Data set, strains Peters1   inbred w/CC7   43 strains     sex: both     age: 10wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters1 - reticulocyte differential (percent of total RBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains43 strains
Mean of the strain means4.28   % 4.57   %
Median of the strain means3.47   % 4.37   %
SD of the strain means± 2.27 ± 1.84
Coefficient of variation (CV)0.530 0.403
Min–max range of strain means1.66   –   10.2   % 1.53   –   9.21   %
Mean sample size per strain11.8   mice 11.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10.5199 10.5199 2.9878 0.0842
strain 42 2963.5689 70.5612 20.0402 < 0.0001
sex:strain 42 966.113 23.0027 6.533 < 0.0001
Residuals 927 3263.9435 3.521


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.47 0.777   14 0.208 0.224 2.4, 4.7 -0.36
129S1/SvImJ m 2.71 0.951   15 0.245 0.351 1.8, 5.6 -1.01
A/J f 2.01 0.296   10 0.0936 0.147 1.5, 2.4 -1.0
A/J m 2.66 0.417   10 0.132 0.157 2.0, 3.1 -1.04
AKR/J f 2.39 1.33   9 0.443 0.556 0.3, 4.5 -0.83
AKR/J m 1.53 0.946   9 0.315 0.617 0.8, 3.9 -1.65
BALB/cByJ f 3.41 1.06   15 0.273 0.31 2.3, 5.7 -0.38
BALB/cByJ m 3.12 1.0   29 0.186 0.321 1.8, 5.6 -0.79
BALB/cJ f 2.23 1.02   11 0.307 0.457 1.5, 4.3 -0.9
BALB/cJ m 8.28 0.881   5 0.394 0.106 7.3, 9.4 2.01
BTBR T+ Itpr3tf/J f 4.21 0.929   9 0.31 0.221 2.9, 5.4 -0.03
BTBR T+ Itpr3tf/J m 3.1 1.02   9 0.341 0.33 2.1, 4.9 -0.8
BUB/BnJ f 2.78 1.13   14 0.301 0.406 1.1, 5.1 -0.66
BUB/BnJ m 6.01 2.67   10 0.844 0.444 3.0, 11.6 0.78
C3H/HeJ f 7.9 1.56   10 0.492 0.197 5.2, 9.2 1.59
C3H/HeJ m 2.76 0.306   10 0.0968 0.111 2.2, 3.3 -0.98
C57BL/10J f 3.46 1.31   21 0.287 0.38 2.1, 6.6 -0.36
C57BL/10J m 2.73 0.502   15 0.13 0.184 1.8, 3.6 -1.0
C57BL/6J f 3.35 0.819   20 0.183 0.245 2.2, 5.0 -0.41
C57BL/6J m 3.62 1.03   20 0.231 0.285 2.2, 6.4 -0.52
C57BLKS/J f 7.18 1.95   10 0.618 0.272 4.6, 10.0 1.28
C57BLKS/J m 7.54 2.86   10 0.905 0.379 2.4, 11.7 1.61
C57BR/cdJ f 2.93 0.653   10 0.207 0.223 1.7, 3.9 -0.59
C57BR/cdJ m 3.52 0.952   12 0.275 0.271 2.2, 5.3 -0.57
C57L/J f 4.19 3.2   12 0.923 0.763 1.7, 12.1 -0.04
C57L/J m 6.4 3.58   15 0.925 0.56 2.1, 14.2 0.99
C58/J f 4.58 1.53   11 0.462 0.334 2.8, 6.7 0.13
C58/J m 5.28 1.34   9 0.447 0.254 3.9, 8.3 0.39
CAST/EiJ f 3.02 1.16   12 0.335 0.384 1.7, 4.7 -0.56
CAST/EiJ m 5.1 2.44   10 0.77 0.478 1.0, 8.2 0.29
CBA/J f 1.92 0.387   9 0.129 0.201 1.2, 2.5 -1.04
CBA/J m 1.79 0.208   10 0.0657 0.116 1.4, 2.2 -1.51
CE/J f 6.06 4.57   13 1.27 0.753 1.9, 14.2 0.78
CE/J m 4.0 2.07   8 0.731 0.517 2.5, 7.9 -0.31
CZECHII/EiJ f 5.53 4.11   10 1.3 0.744 1.6, 14.9 0.55
CZECHII/EiJ m 3.52 1.16   10 0.366 0.329 1.9, 5.1 -0.57
DBA/1J f 3.11 1.5   14 0.401 0.483 0.9, 6.4 -0.52
DBA/1J m 2.46 0.582   11 0.175 0.236 1.3, 3.3 -1.15
DBA/2J f 2.65 0.932   13 0.259 0.351 1.2, 3.9 -0.72
DBA/2J m 3.54 0.837   10 0.265 0.236 2.6, 5.3 -0.56
FVB/NJ f 2.93 1.27   12 0.366 0.434 2.0, 5.9 -0.59
FVB/NJ m 4.38 1.43   11 0.432 0.327 1.6, 6.2 -0.1
I/LnJ f 4.42 1.02   13 0.282 0.229 3.2, 6.7 0.06
I/LnJ m 4.37 0.821   13 0.228 0.188 3.0, 5.6 -0.11
JF1/MsJ f 1.66 1.41   11 0.426 0.85 0.3, 5.7 -1.15
JF1/MsJ m 3.26 1.15   16 0.288 0.353 1.8, 6.2 -0.71
KK/HlJ f 2.43 1.07   14 0.286 0.441 0.6, 4.2 -0.82
KK/HlJ m 6.05 4.99   11 1.5 0.825 2.0, 15.4 0.8
LP/J f 3.74 1.56   15 0.403 0.418 2.0, 6.4 -0.24
LP/J m 4.58 2.68   10 0.847 0.585 2.0, 10.5 0.01
MA/MyJ f 8.95 4.25   11 1.28 0.475 5.5, 20.6 2.06
MA/MyJ m 4.52 0.801   13 0.222 0.177 3.2, 6.0 -0.03
MOLF/EiJ f 10.2 3.2   12 0.924 0.312 4.6, 14.7 2.61
MOLF/EiJ m 9.21 2.74   15 0.709 0.298 3.8, 14.5 2.52
MSM/MsJ f 2.11 0.836   11 0.252 0.396 0.7, 3.4 -0.96
MSM/MsJ m 4.72 3.15   11 0.949 0.667 1.2, 10.7 0.08
NOD/ShiLtJ f 9.3 1.68   10 0.532 0.181 7.3, 13.4 2.21
NOD/ShiLtJ m 7.4 2.05   9 0.682 0.277 4.7, 11.7 1.54
NON/ShiLtJ f 3.8 1.12   10 0.353 0.294 1.7, 5.2 -0.21
NON/ShiLtJ m 6.34 1.71   10 0.54 0.269 4.6, 10.7 0.96
NZB/BlNJ f 4.53 1.76   12 0.508 0.389 2.4, 9.6 0.11
NZB/BlNJ m 3.36 0.908   9 0.303 0.271 1.7, 4.3 -0.66
NZW/LacJ f 7.81 3.05   12 0.882 0.391 4.5, 12.7 1.55
NZW/LacJ m 4.51 1.73   10 0.546 0.383 2.9, 8.8 -0.03
PERA/EiJ f 4.54 1.89   10 0.597 0.416 2.1, 8.9 0.11
PERA/EiJ m 7.38 5.03   8 1.78 0.682 1.8, 15.9 1.52
PL/J f 3.74 1.64   16 0.41 0.438 1.2, 6.6 -0.24
PL/J m 4.67 1.27   9 0.423 0.272 3.2, 7.0 0.05
PWK/PhJ f 2.32 1.05   13 0.292 0.455 1.1, 4.1 -0.86
PWK/PhJ m 4.38 0.538   12 0.155 0.123 3.1, 5.2 -0.1
RF/J f 2.26 0.795   10 0.251 0.352 1.1, 3.6 -0.89
RF/J m 3.55 2.64   15 0.683 0.745 1.8, 8.9 -0.55
RIIIS/J f 3.11 1.19   11 0.358 0.382 1.6, 5.8 -0.52
RIIIS/J m 3.06 1.41   16 0.352 0.459 1.6, 7.1 -0.82
SEA/GnJ f 9.18 3.08   10 0.975 0.336 4.2, 13.4 2.16
SEA/GnJ m 6.32 1.76   9 0.587 0.279 4.2, 8.6 0.95
SJL/J f 2.6 0.542   8 0.192 0.209 1.4, 3.1 -0.74
SJL/J m 3.61 1.3   14 0.347 0.359 1.7, 6.6 -0.52
SM/J f 3.54 1.46   11 0.441 0.413 1.5, 5.8 -0.33
SM/J m 3.36 1.45   10 0.46 0.433 1.6, 6.1 -0.66
SPRET/EiJ f 4.02 0.966   11 0.291 0.24 2.9, 5.5 -0.11
SPRET/EiJ m 5.43 1.05   11 0.317 0.194 4.0, 7.5 0.47
SWR/J f 3.23 1.0   13 0.278 0.311 1.8, 5.3 -0.46
SWR/J m 4.09 0.97   11 0.292 0.237 2.2, 5.9 -0.26
WSB/EiJ f 7.25 1.61   11 0.486 0.222 3.3, 9.6 1.31
WSB/EiJ m 8.31 2.47   9 0.824 0.297 5.9, 13.2 2.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.4714 0.5015 4.4556 2.4872
129S1/SvImJ m 2.7067 0.4845 3.6575 1.7558
A/J f 2.01 0.5934 3.1745 0.8455
A/J m 2.66 0.5934 3.8245 1.4955
AKR/J f 2.3889 0.6255 3.6164 1.1614
AKR/J m 1.5333 0.6255 2.7608 0.3058
BALB/cByJ f 3.4067 0.4845 4.3575 2.4558
BALB/cByJ m 3.1172 0.3484 3.8011 2.4334
BALB/cJ f 2.2273 0.5658 3.3376 1.1169
BALB/cJ m 8.28 0.8392 9.9269 6.6331
BTBR T+ Itpr3tf/J f 4.2111 0.6255 5.4386 2.9836
BTBR T+ Itpr3tf/J m 3.1 0.6255 4.3275 1.8725
BUB/BnJ f 2.7786 0.5015 3.7628 1.7944
BUB/BnJ m 6.01 0.5934 7.1745 4.8455
C3H/HeJ f 7.9 0.5934 9.0645 6.7355
C3H/HeJ m 2.76 0.5934 3.9245 1.5955
C57BL/10J f 3.4571 0.4095 4.2607 2.6535
C57BL/10J m 2.7267 0.4845 3.6775 1.7758
C57BL/6J f 3.345 0.4196 4.1684 2.5216
C57BL/6J m 3.62 0.4196 4.4434 2.7966
C57BLKS/J f 7.18 0.5934 8.3445 6.0155
C57BLKS/J m 7.54 0.5934 8.7045 6.3755
C57BR/cdJ f 2.93 0.5934 4.0945 1.7655
C57BR/cdJ m 3.5167 0.5417 4.5797 2.4536
C57L/J f 4.1917 0.5417 5.2547 3.1286
C57L/J m 6.4 0.4845 7.3508 5.4492
C58/J f 4.5818 0.5658 5.6921 3.4715
C58/J m 5.2778 0.6255 6.5053 4.0503
CAST/EiJ f 3.0167 0.5417 4.0797 1.9536
CAST/EiJ m 5.1 0.5934 6.2645 3.9355
CBA/J f 1.9222 0.6255 3.1497 0.6947
CBA/J m 1.79 0.5934 2.9545 0.6255
CE/J f 6.0615 0.5204 7.0829 5.0402
CE/J m 4.0 0.6634 5.302 2.698
CZECHII/EiJ f 5.53 0.5934 6.6945 4.3655
CZECHII/EiJ m 3.52 0.5934 4.6845 2.3555
DBA/1J f 3.1071 0.5015 4.0913 2.1229
DBA/1J m 2.4636 0.5658 3.574 1.3533
DBA/2J f 2.6538 0.5204 3.6752 1.6325
DBA/2J m 3.54 0.5934 4.7045 2.3755
FVB/NJ f 2.925 0.5417 3.9881 1.8619
FVB/NJ m 4.3818 0.5658 5.4921 3.2715
I/LnJ f 4.4231 0.5204 5.4444 3.4017
I/LnJ m 4.3692 0.5204 5.3906 3.3479
JF1/MsJ f 1.6636 0.5658 2.774 0.5533
JF1/MsJ m 3.2625 0.4691 4.1831 2.3419
KK/HlJ f 2.4286 0.5015 3.4128 1.4444
KK/HlJ m 6.0455 0.5658 7.1558 4.9351
LP/J f 3.74 0.4845 4.6908 2.7892
LP/J m 4.58 0.5934 5.7445 3.4155
MA/MyJ f 8.9545 0.5658 10.0649 7.8442
MA/MyJ m 4.5231 0.5204 5.5444 3.5017
MOLF/EiJ f 10.2417 0.5417 11.3047 9.1786
MOLF/EiJ m 9.2067 0.4845 10.1575 8.2558
MSM/MsJ f 2.1091 0.5658 3.2194 0.9988
MSM/MsJ m 4.7182 0.5658 5.8285 3.6079
NOD/ShiLtJ f 9.3 0.5934 10.4645 8.1355
NOD/ShiLtJ m 7.4 0.6255 8.6275 6.1725
NON/ShiLtJ f 3.8 0.5934 4.9645 2.6355
NON/ShiLtJ m 6.34 0.5934 7.5045 5.1755
NZB/BlNJ f 4.525 0.5417 5.5881 3.4619
NZB/BlNJ m 3.3556 0.6255 4.5831 2.128
NZW/LacJ f 7.8083 0.5417 8.8714 6.7453
NZW/LacJ m 4.51 0.5934 5.6745 3.3455
PERA/EiJ f 4.54 0.5934 5.7045 3.3755
PERA/EiJ m 7.375 0.6634 8.677 6.073
PL/J f 3.7438 0.4691 4.6644 2.8231
PL/J m 4.6667 0.6255 5.8942 3.4392
PWK/PhJ f 2.3154 0.5204 3.3367 1.294
PWK/PhJ m 4.375 0.5417 5.4381 3.3119
RF/J f 2.26 0.5934 3.4245 1.0955
RF/J m 3.5467 0.4845 4.4975 2.5958
RIIIS/J f 3.1091 0.5658 4.2194 1.9988
RIIIS/J m 3.0625 0.4691 3.9831 2.1419
SEA/GnJ f 9.18 0.5934 10.3445 8.0155
SEA/GnJ m 6.3222 0.6255 7.5497 5.0947
SJL/J f 2.6 0.6634 3.902 1.298
SJL/J m 3.6143 0.5015 4.5985 2.6301
SM/J f 3.5364 0.5658 4.6467 2.426
SM/J m 3.36 0.5934 4.5245 2.1955
SPRET/EiJ f 4.0182 0.5658 5.1285 2.9079
SPRET/EiJ m 5.4273 0.5658 6.5376 4.3169
SWR/J f 3.2308 0.5204 4.2521 2.2094
SWR/J m 4.0909 0.5658 5.2012 2.9806
WSB/EiJ f 7.2455 0.5658 8.3558 6.1351
WSB/EiJ m 8.3111 0.6255 9.5386 7.0836


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.089 0.3487 3.7733 2.4048
A/J both 2.335 0.4196 3.1584 1.5116
AKR/J both 1.9611 0.4423 2.8291 1.0931
BALB/cByJ both 3.262 0.2984 3.8476 2.6764
BALB/cJ both 5.2536 0.506 6.2467 4.2605
BTBR T+ Itpr3tf/J both 3.6556 0.4423 4.5235 2.7876
BUB/BnJ both 4.3943 0.3885 5.1566 3.6319
C3H/HeJ both 5.33 0.4196 6.1534 4.5066
C57BL/10J both 3.0919 0.3172 3.7144 2.4694
C57BL/6J both 3.4825 0.2967 4.0648 2.9002
C57BLKS/J both 7.36 0.4196 8.1834 6.5366
C57BR/cdJ both 3.2233 0.4017 4.0117 2.4349
C57L/J both 5.2958 0.3634 6.009 4.5827
C58/J both 4.9298 0.4217 5.7574 4.1022
CAST/EiJ both 4.0583 0.4017 4.8467 3.2699
CBA/J both 1.8561 0.4311 2.7021 1.0101
CE/J both 5.0308 0.4216 5.8582 4.2034
CZECHII/EiJ both 4.525 0.4196 5.3484 3.7016
DBA/1J both 2.7854 0.378 3.5273 2.0435
DBA/2J both 3.0969 0.3946 3.8714 2.3224
FVB/NJ both 3.6534 0.3916 4.422 2.8848
I/LnJ both 4.3962 0.368 5.1184 3.6739
JF1/MsJ both 2.4631 0.3675 3.1842 1.7419
KK/HlJ both 4.237 0.378 4.9789 3.4951
LP/J both 4.16 0.383 4.9117 3.4083
MA/MyJ both 6.7388 0.3844 7.4931 5.9845
MOLF/EiJ both 9.7242 0.3634 10.4373 9.011
MSM/MsJ both 3.4136 0.4001 4.1988 2.6285
NOD/ShiLtJ both 8.35 0.4311 9.196 7.504
NON/ShiLtJ both 5.07 0.4196 5.8934 4.2466
NZB/BlNJ both 3.9403 0.4137 4.7522 3.1284
NZW/LacJ both 6.1592 0.4017 6.9476 5.3708
PERA/EiJ both 5.9575 0.445 6.8309 5.0841
PL/J both 4.2052 0.3909 4.9724 3.438
PWK/PhJ both 3.3452 0.3756 4.0823 2.6081
RF/J both 2.9033 0.383 3.655 2.1516
RIIIS/J both 3.0858 0.3675 3.807 2.3646
SEA/GnJ both 7.7511 0.4311 8.5971 6.9051
SJL/J both 3.1071 0.4158 3.9232 2.2911
SM/J both 3.4482 0.4099 4.2527 2.6437
SPRET/EiJ both 4.7227 0.4001 5.5078 3.9376
SWR/J both 3.6608 0.3844 4.4152 2.9065
WSB/EiJ both 7.7783 0.4217 8.6059 6.9507




  GWAS USING LINEAR MIXED MODELS