Phenotype measure:   Peters1   BASO

ID, description, units MPD:6216   BASO   basophil differential (percent of total WBC)   [%]
Data set, strains Peters1   inbred w/CC7   43 strains     sex: both     age: 10wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters1 - basophil differential (percent of total WBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains43 strains
Mean of the strain means1.56   % 1.87   %
Median of the strain means1.29   % 1.54   %
SD of the strain means± 1.11 ± 1.28
Coefficient of variation (CV)0.715 0.687
Min–max range of strain means0.290   –   4.73   % 0.320   –   4.93   %
Mean sample size per strain11.4   mice 10.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22.3512 22.3512 15.5219 0.0001
strain 42 1002.5387 23.87 16.5766 < 0.0001
sex:strain 42 300.4143 7.1527 4.9673 < 0.0001
Residuals 876 1261.4189 1.44


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.15 1.75   14 0.466 0.812 0.6, 6.0 0.54
129S1/SvImJ m 1.38 0.63   5 0.282 0.457 0.5, 2.1 -0.38
A/J f 0.74 0.288   10 0.0909 0.389 0.4, 1.3 -0.73
A/J m 0.4 0.141   10 0.0447 0.354 0.2, 0.7 -1.14
AKR/J f 0.31 0.129   10 0.0407 0.415 0.1, 0.5 -1.12
AKR/J m 0.95 0.682   8 0.241 0.718 0.2, 2.1 -0.72
BALB/cByJ f 0.871 0.522   14 0.14 0.6 0.3, 2.2 -0.62
BALB/cByJ m 1.48 1.46   29 0.272 0.99 0.3, 5.2 -0.3
BALB/cJ f 1.78 2.27   11 0.684 1.27 0.4, 7.2 0.2
BALB/cJ m 0.46 0.23   5 0.103 0.5 0.1, 0.7 -1.1
BTBR T+ Itpr3tf/J f 1.07 0.691   10 0.219 0.646 0.3, 2.5 -0.44
BTBR T+ Itpr3tf/J m 0.95 0.815   10 0.258 0.858 0.2, 2.5 -0.72
BUB/BnJ f 3.75 2.26   14 0.603 0.602 0.3, 6.2 1.97
BUB/BnJ m 3.6 0.946   10 0.299 0.263 2.7, 5.2 1.35
C3H/HeJ f 4.73 1.51   10 0.477 0.319 2.5, 6.8 2.86
C3H/HeJ m 4.45 1.34   10 0.422 0.3 1.7, 6.5 2.01
C57BL/10J f 0.885 0.861   20 0.193 0.973 0.2, 3.0 -0.6
C57BL/10J m 3.01 1.39   15 0.36 0.463 0.9, 4.6 0.89
C57BL/6J f 1.07 1.12   11 0.338 1.05 0.2, 3.4 -0.44
C57BL/6J m 2.61 0.979   11 0.295 0.375 0.9, 4.6 0.58
C57BLKS/J f 4.16 1.18   9 0.394 0.285 2.0, 6.0 2.34
C57BLKS/J m 1.77 1.36   9 0.453 0.77 0.3, 4.0 -0.08
C57BR/cdJ f 1.33 1.77   9 0.589 1.33 0.2, 5.4 -0.2
C57BR/cdJ m 2.33 2.41   12 0.695 1.03 0.3, 6.6 0.36
C57L/J f 0.908 0.739   12 0.213 0.814 0.3, 3.1 -0.58
C57L/J m 1.79 0.677   15 0.175 0.379 1.0, 3.8 -0.06
C58/J f 0.755 0.798   11 0.241 1.06 0.2, 3.0 -0.72
C58/J m 0.45 0.0756   8 0.0267 0.168 0.4, 0.6 -1.11
CAST/EiJ f 0.991 0.906   11 0.273 0.914 0.4, 3.4 -0.51
CAST/EiJ m 0.773 0.471   11 0.142 0.61 0.3, 1.7 -0.85
CBA/J f 0.611 0.169   9 0.0564 0.277 0.4, 0.9 -0.85
CBA/J m 0.58 0.22   10 0.0696 0.379 0.3, 0.9 -1.0
CE/J f 0.692 0.401   13 0.111 0.579 0.3, 1.6 -0.78
CE/J m 2.54 2.3   8 0.814 0.907 0.3, 6.5 0.52
CZECHII/EiJ f 0.691 0.176   11 0.053 0.254 0.4, 0.9 -0.78
CZECHII/EiJ m 0.818 0.531   11 0.16 0.649 0.2, 2.0 -0.82
DBA/1J f 1.95 0.686   4 0.343 0.352 1.4, 2.9 0.36
DBA/1J m 1.74 0.726   11 0.219 0.418 1.0, 3.2 -0.1
DBA/2J f 1.29 0.81   13 0.225 0.627 0.4, 2.5 -0.24
DBA/2J m 2.59 1.87   10 0.59 0.721 0.4, 5.2 0.56
FVB/NJ f 0.617 0.395   12 0.114 0.641 0.2, 1.3 -0.84
FVB/NJ m 0.817 0.459   12 0.132 0.562 0.2, 1.5 -0.82
I/LnJ f 1.42 1.12   13 0.31 0.791 0.2, 4.0 -0.12
I/LnJ m 4.05 2.02   14 0.54 0.499 1.0, 8.7 1.7
JF1/MsJ f 1.27 0.661   12 0.191 0.522 0.4, 2.5 -0.26
JF1/MsJ m 2.14 0.378   5 0.169 0.177 1.8, 2.6 0.21
KK/HlJ f 0.764 0.427   14 0.114 0.559 0.3, 1.5 -0.71
KK/HlJ m 1.73 1.16   11 0.349 0.67 0.3, 3.6 -0.11
LP/J f 2.03 2.37   14 0.633 1.17 0.2, 7.4 0.43
LP/J m 1.69 2.2   9 0.732 1.3 0.3, 5.7 -0.14
MA/MyJ f 1.71 1.52   12 0.44 0.892 0.2, 3.9 0.14
MA/MyJ m 1.31 0.89   12 0.257 0.68 0.6, 3.0 -0.43
MOLF/EiJ f 1.09 0.574   13 0.159 0.525 0.5, 2.5 -0.42
MOLF/EiJ m 1.22 0.876   15 0.226 0.718 0.4, 3.6 -0.51
MSM/MsJ f 1.34 0.92   11 0.277 0.688 0.2, 2.8 -0.19
MSM/MsJ m 1.54 0.875   10 0.277 0.568 0.2, 3.0 -0.26
NOD/ShiLtJ f 4.22 1.38   10 0.436 0.327 2.6, 7.0 2.4
NOD/ShiLtJ m 4.93 1.61   10 0.509 0.327 1.9, 6.8 2.39
NON/ShiLtJ f 0.29 0.264   10 0.0836 0.912 0.1, 0.9 -1.14
NON/ShiLtJ m 0.356 0.477   9 0.159 1.34 0.1, 1.6 -1.18
NZB/BlNJ f 1.55 0.808   11 0.244 0.523 0.8, 3.4 0.0
NZB/BlNJ m 3.9 1.36   9 0.454 0.349 2.0, 5.7 1.58
NZW/LacJ f 3.43 1.09   12 0.315 0.318 1.4, 5.3 1.69
NZW/LacJ m 4.0 1.37   10 0.434 0.343 2.4, 6.8 1.66
PERA/EiJ f 1.3 0.739   11 0.223 0.568 0.2, 2.8 -0.23
PERA/EiJ m 1.81 0.753   8 0.266 0.415 0.5, 2.7 -0.05
PL/J f 3.51 2.48   16 0.619 0.705 0.1, 7.7 1.76
PL/J m 0.32 0.103   10 0.0327 0.323 0.1, 0.4 -1.21
PWK/PhJ f 1.7 1.03   12 0.296 0.604 0.6, 3.5 0.13
PWK/PhJ m 3.81 0.742   12 0.214 0.195 2.6, 4.9 1.51
RF/J f 0.622 0.452   9 0.151 0.727 0.3, 1.4 -0.84
RF/J m 0.719 0.409   16 0.102 0.568 0.2, 1.6 -0.9
RIIIS/J f 1.1 1.33   11 0.4 1.21 0.2, 3.8 -0.41
RIIIS/J m 0.769 1.08   16 0.27 1.41 -0.86
SEA/GnJ f 2.42 1.87   10 0.591 0.773 0.5, 5.2 0.78
SEA/GnJ m 3.57 1.79   9 0.595 0.501 0.5, 5.6 1.33
SJL/J f 0.625 0.198   8 0.0701 0.317 0.3, 1.0 -0.84
SJL/J m 1.11 0.574   14 0.153 0.515 0.4, 2.4 -0.59
SM/J f 1.48 1.43   11 0.432 0.968 -0.07
SM/J m 0.67 0.287   10 0.0907 0.428 0.2, 1.1 -0.93
SPRET/EiJ f 1.52 0.952   10 0.301 0.626 0.1, 2.9 -0.03
SPRET/EiJ m 1.51 1.15   11 0.347 0.763 0.1, 4.0 -0.28
SWR/J f 1.67 1.62   13 0.45 0.972 0.3, 4.7 0.1
SWR/J m 3.13 1.57   11 0.473 0.501 0.5, 5.4 0.98
WSB/EiJ f 0.464 0.229   11 0.0691 0.494 -0.98
WSB/EiJ m 0.556 0.219   9 0.0729 0.393 0.3, 0.9 -1.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.15 0.3207 2.7795 1.5205
129S1/SvImJ m 1.38 0.5367 2.4333 0.3267
A/J f 0.74 0.3795 1.4848 0.0
A/J m 0.4 0.3795 1.1448 0.0
AKR/J f 0.31 0.3795 1.0548 0.0
AKR/J m 0.95 0.4243 1.7827 0.1173
BALB/cByJ f 0.8714 0.3207 1.5009 0.242
BALB/cByJ m 1.4793 0.2228 1.9167 1.042
BALB/cJ f 1.7818 0.3618 2.4919 1.0717
BALB/cJ m 0.46 0.5367 1.5133 0.0
BTBR T+ Itpr3tf/J f 1.07 0.3795 1.8148 0.3252
BTBR T+ Itpr3tf/J m 0.95 0.3795 1.6948 0.2052
BUB/BnJ f 3.75 0.3207 4.3795 3.1205
BUB/BnJ m 3.6 0.3795 4.3448 2.8552
C3H/HeJ f 4.73 0.3795 5.4748 3.9852
C3H/HeJ m 4.45 0.3795 5.1948 3.7052
C57BL/10J f 0.885 0.2683 1.4116 0.3584
C57BL/10J m 3.0133 0.3098 3.6214 2.4052
C57BL/6J f 1.0727 0.3618 1.7828 0.3626
C57BL/6J m 2.6091 0.3618 3.3192 1.899
C57BLKS/J f 4.1556 0.4 4.9406 3.3705
C57BLKS/J m 1.7667 0.4 2.5517 0.9816
C57BR/cdJ f 1.3333 0.4 2.1184 0.5483
C57BR/cdJ m 2.3333 0.3464 3.0132 1.6534
C57L/J f 0.9083 0.3464 1.5882 0.2284
C57L/J m 1.7867 0.3098 2.3948 1.1786
C58/J f 0.7545 0.3618 1.4647 0.0444
C58/J m 0.45 0.4243 1.2827 0.0
CAST/EiJ f 0.9909 0.3618 1.701 0.2808
CAST/EiJ m 0.7727 0.3618 1.4828 0.0626
CBA/J f 0.6111 0.4 1.3962 0.0
CBA/J m 0.58 0.3795 1.3248 0.0
CE/J f 0.6923 0.3328 1.3455 0.0391
CE/J m 2.5375 0.4243 3.3702 1.7048
CZECHII/EiJ f 0.6909 0.3618 1.401 0.0
CZECHII/EiJ m 0.8182 0.3618 1.5283 0.1081
DBA/1J f 1.95 0.6 3.1276 0.7724
DBA/1J m 1.7364 0.3618 2.4465 1.0262
DBA/2J f 1.2923 0.3328 1.9455 0.6391
DBA/2J m 2.59 0.3795 3.3348 1.8452
FVB/NJ f 0.6167 0.3464 1.2966 0.0
FVB/NJ m 0.8167 0.3464 1.4966 0.1368
I/LnJ f 1.4154 0.3328 2.0686 0.7622
I/LnJ m 4.05 0.3207 4.6795 3.4205
JF1/MsJ f 1.2667 0.3464 1.9466 0.5868
JF1/MsJ m 2.14 0.5367 3.1933 1.0867
KK/HlJ f 0.7643 0.3207 1.3937 0.1348
KK/HlJ m 1.7273 0.3618 2.4374 1.0172
LP/J f 2.0286 0.3207 2.658 1.3991
LP/J m 1.6889 0.4 2.474 0.9038
MA/MyJ f 1.7083 0.3464 2.3882 1.0284
MA/MyJ m 1.3083 0.3464 1.9882 0.6284
MOLF/EiJ f 1.0923 0.3328 1.7455 0.4391
MOLF/EiJ m 1.22 0.3098 1.8281 0.6119
MSM/MsJ f 1.3364 0.3618 2.0465 0.6262
MSM/MsJ m 1.54 0.3795 2.2848 0.7952
NOD/ShiLtJ f 4.22 0.3795 4.9648 3.4752
NOD/ShiLtJ m 4.93 0.3795 5.6748 4.1852
NON/ShiLtJ f 0.29 0.3795 1.0348 0.0
NON/ShiLtJ m 0.3556 0.4 1.1406 0.0
NZB/BlNJ f 1.5455 0.3618 2.2556 0.8353
NZB/BlNJ m 3.9 0.4 4.6851 3.1149
NZW/LacJ f 3.4333 0.3464 4.1132 2.7534
NZW/LacJ m 4.0 0.3795 4.7448 3.2552
PERA/EiJ f 1.3 0.3618 2.0101 0.5899
PERA/EiJ m 1.8125 0.4243 2.6452 0.9798
PL/J f 3.5125 0.3 4.1013 2.9237
PL/J m 0.32 0.3795 1.0648 0.0
PWK/PhJ f 1.7 0.3464 2.3799 1.0201
PWK/PhJ m 3.8083 0.3464 4.4882 3.1284
RF/J f 0.6222 0.4 1.4073 0.0
RF/J m 0.7188 0.3 1.3075 0.13
RIIIS/J f 1.1 0.3618 1.8101 0.3899
RIIIS/J m 0.7688 0.3 1.3575 0.18
SEA/GnJ f 2.42 0.3795 3.1648 1.6752
SEA/GnJ m 3.5667 0.4 4.3517 2.7816
SJL/J f 0.625 0.4243 1.4577 0.0
SJL/J m 1.1143 0.3207 1.7437 0.4848
SM/J f 1.4818 0.3618 2.1919 0.7717
SM/J m 0.67 0.3795 1.4148 0.0
SPRET/EiJ f 1.52 0.3795 2.2648 0.7752
SPRET/EiJ m 1.5091 0.3618 2.2192 0.799
SWR/J f 1.6692 0.3328 2.3224 1.016
SWR/J m 3.1273 0.3618 3.8374 2.4172
WSB/EiJ f 0.4636 0.3618 1.1738 0.0
WSB/EiJ m 0.5556 0.4 1.3406 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.765 0.3126 2.3785 1.1515
A/J both 0.57 0.2683 1.0966 0.0434
AKR/J both 0.63 0.2846 1.1886 0.0714
BALB/cByJ both 1.1754 0.1953 1.5586 0.7921
BALB/cJ both 1.1209 0.3236 1.7561 0.4858
BTBR T+ Itpr3tf/J both 1.01 0.2683 1.5366 0.4834
BUB/BnJ both 3.675 0.2484 4.1626 3.1874
C3H/HeJ both 4.59 0.2683 5.1166 4.0634
C57BL/10J both 1.9492 0.2049 2.3514 1.5469
C57BL/6J both 1.8409 0.2558 2.343 1.3388
C57BLKS/J both 2.9611 0.2828 3.5162 2.406
C57BR/cdJ both 1.8333 0.2646 2.3526 1.3141
C57L/J both 1.3475 0.2324 1.8036 0.8914
C58/J both 0.6023 0.2788 1.1495 0.0551
CAST/EiJ both 0.8818 0.2558 1.3839 0.3797
CBA/J both 0.5956 0.2757 1.1366 0.0545
CE/J both 1.6149 0.2696 2.1441 1.0857
CZECHII/EiJ both 0.7545 0.2558 1.2567 0.2524
DBA/1J both 1.8432 0.3503 2.5307 1.1556
DBA/2J both 1.9412 0.2524 2.4365 1.4458
FVB/NJ both 0.7167 0.2449 1.1974 0.2359
I/LnJ both 2.7327 0.2311 3.1863 2.2791
JF1/MsJ both 1.7033 0.3194 2.3302 1.0765
KK/HlJ both 1.2458 0.2417 1.7202 0.7713
LP/J both 1.8587 0.2563 2.3619 1.3556
MA/MyJ both 1.5083 0.2449 1.9891 1.0276
MOLF/EiJ both 1.1562 0.2274 1.6024 0.7099
MSM/MsJ both 1.4382 0.2622 1.9527 0.9237
NOD/ShiLtJ both 4.575 0.2683 5.1016 4.0484
NON/ShiLtJ both 0.3228 0.2757 0.8638 0.0
NZB/BlNJ both 2.7227 0.2697 3.252 2.1934
NZW/LacJ both 3.7167 0.2569 4.2209 3.2125
PERA/EiJ both 1.5563 0.2788 2.1034 1.0091
PL/J both 1.9163 0.2419 2.391 1.4415
PWK/PhJ both 2.7542 0.2449 3.2349 2.2734
RF/J both 0.6705 0.25 1.1612 0.1798
RIIIS/J both 0.9344 0.235 1.3956 0.4731
SEA/GnJ both 2.9933 0.2757 3.5344 2.4523
SJL/J both 0.8696 0.2659 1.3916 0.3477
SM/J both 1.0759 0.2622 1.5904 0.5614
SPRET/EiJ both 1.5145 0.2622 2.0291 1.0
SWR/J both 2.3983 0.2458 2.8807 1.9158
WSB/EiJ both 0.5096 0.2697 1.0389 0.0




  GWAS USING LINEAR MIXED MODELS