Project measure / variable:   Crusio1   lacun_pct_R

ID, description, units MPD:62083   lacun_pct_R   percentage of hippocampus that is stratum lacunosum-moleculare   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum lacunosum-moleculare right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means5.893   % 6.0457   %
Median of the strain means5.8828   % 6.0314   %
SD of the strain means± 0.78872 ± 0.75198
Coefficient of variation (CV)0.1338 0.1244
Min–max range of strain means4.2493   –   7.845   % 4.7341   –   8.6758   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.059 2.059 0.9103 0.3407
strain 47 135.1937 2.8765 1.2717 0.1191
sex:strain 47 93.6577 1.9927 0.881 0.695
Residuals 343 775.8434 2.2619


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 6.5889 0.0   1   0.0 0.0 6.588901702, 6.588901702 0.88
BXD1 m 8.6758 0.0   1   0.0 0.0 8.675824597, 8.675824597 3.5
BXD100 f 6.1034 1.2357   5 0.55263 0.2025 4.981148593, 8.148546868 0.27
BXD100 m 6.2579 0.45803   5 0.20484 0.0732 5.805189027, 6.943040841 0.28
BXD101 f 6.6811 1.0426   3 0.60192 0.156 5.753304608, 7.809330234 1.0
BXD101 m 5.9548 0.8647   4 0.43235 0.1452 4.991160231, 6.722204244 -0.12
BXD102 f 6.6789 0.66634   5 0.298 0.0998 5.529306499, 7.20415874 1.0
BXD102 m 6.1406 0.80366   5 0.35941 0.1309 5.325409459, 7.440598501 0.13
BXD11 f 4.4108 0.8899   5 0.39797 0.2018 3.251063437, 5.318771416 -1.88
BXD11 m 4.8739 1.2282   5 0.54925 0.252 3.278140585, 6.724066647 -1.56
BXD13 f 6.0286 0.96215   5 0.43028 0.1596 5.049457088, 7.490774183 0.17
BXD13 m 6.5024 0.55935   5 0.25015 0.086 5.569075783, 7.036202393 0.61
BXD14 f 5.8158 0.61716   5 0.276 0.1061 5.075480089, 6.775183054 -0.1
BXD14 m 5.7698 0.65456   5 0.29273 0.1134 4.932702126, 6.512948543 -0.37
BXD15 f 5.6762 0.37064   5 0.16575 0.0653 5.171534978, 6.016981497 -0.27
BXD15 m 6.4982 0.47042   5 0.21038 0.0724 6.009703882, 7.014825868 0.6
BXD16 f 5.8124 1.1279   5 0.50439 0.194 4.284159978, 7.041216648 -0.1
BXD16 m 6.0719 0.67566   5 0.30217 0.1113 4.899889809, 6.544791721 0.03
BXD18 f 7.1596 0.0   1   0.0 0.0 7.159568308, 7.159568308 1.61
BXD18 m 5.6758 0.0   1   0.0 0.0 5.675828246, 5.675828246 -0.49
BXD19 f 4.9405 0.0   1   0.0 0.0 4.940521154, 4.940521154 -1.21
BXD19 m 6.2934 0.0   1   0.0 0.0 6.293430062, 6.293430062 0.33
BXD2 f 4.5792 0.20353   5 0.09102 0.0444 4.285739463, 4.762815198 -1.67
BXD2 m 6.8433 4.8001   5 2.1467 0.7014 3.598047231, 15.35000433 1.06
BXD21 f 6.0037 1.1377   5 0.5088 0.1895 4.498616454, 7.040988579 0.14
BXD21 m 5.394 0.87123   6 0.35568 0.1615 4.541569797, 6.544791721 -0.87
BXD27 f 5.799 0.76647   5 0.34278 0.1322 4.674660958, 6.770035203 -0.12
BXD27 m 5.7862 0.81952   5 0.3665 0.1416 4.630299439, 6.718056654 -0.35
BXD28 f 5.3104 0.50976   5 0.22797 0.096 4.842490703, 6.077243912 -0.74
BXD28 m 5.0332 0.51508   5 0.23035 0.1023 4.427189351, 5.800270449 -1.35
BXD31 f 6.5456 0.92514   5 0.41373 0.1413 5.435204759, 7.52307306 0.83
BXD31 m 6.6951 0.69546   4 0.34773 0.1039 5.715428799, 7.28931809 0.86
BXD32 f 5.2479 0.54471   5 0.2436 0.1038 4.518265497, 5.870529405 -0.82
BXD32 m 5.0188 0.62945   5 0.2815 0.1254 4.370874256, 5.840227947 -1.37
BXD33 m 5.6343 0.0   1   0.0 0.0 5.634314647, 5.634314647 -0.55
BXD34 f 4.2493 0.0   1   0.0 0.0 4.249261697, 4.249261697 -2.08
BXD34 m 5.4237 0.0   1   0.0 0.0 5.423714946, 5.423714946 -0.83
BXD39 f 5.0821 0.58524   5 0.26173 0.1152 4.232014642, 5.816689221 -1.03
BXD39 m 5.7161 0.46454   5 0.20775 0.0813 5.255258716, 6.351577502 -0.44
BXD40 f 6.114 0.6097   5 0.27266 0.0997 5.383388646, 7.062192372 0.28
BXD40 m 6.0422 0.87562   5 0.39159 0.1449 5.081940331, 7.241890955 0.0
BXD42 f 6.0323 0.77332   5 0.34584 0.1282 4.840583917, 6.909271193 0.18
BXD42 m 6.705 0.62165   5 0.27801 0.0927 5.730409082, 7.276093028 0.88
BXD43 f 5.5238 0.77099   5 0.3448 0.1396 4.365040534, 6.269775966 -0.47
BXD43 m 6.0585 1.1943   5 0.53409 0.1971 4.169317104, 7.449953096 0.02
BXD44 f 6.3536 0.69584   5 0.31119 0.1095 5.884815128, 7.568681748 0.58
BXD44 m 5.6915 1.4449   5 0.64618 0.2539 4.044763983, 7.928426269 -0.47
BXD48 f 5.0834 0.5241   5 0.23439 0.1031 4.565861621, 5.965502938 -1.03
BXD48 m 7.7898 4.8897   5 2.1867 0.6277 4.795703509, 16.4950405 2.32
BXD49 f 6.6595 1.1697   4 0.58486 0.1756 5.115325881, 7.617373393 0.97
BXD49 m 6.4032 0.78381   5 0.35053 0.1224 5.21492814, 7.196556925 0.48
BXD50 f 5.6559 0.58092   5 0.25979 0.1027 4.695660777, 6.073628173 -0.3
BXD50 m 6.5616 0.63918   5 0.28585 0.0974 5.964044791, 7.350852007 0.69
BXD51 f 6.1991 0.7056   5 0.31555 0.1138 5.363857881, 7.027571348 0.39
BXD51 m 6.425 0.94096   5 0.42081 0.1465 5.078885836, 7.325329997 0.5
BXD6 f 7.845 3.3099   5 1.4802 0.4219 5.050406703, 13.58269468 2.47
BXD6 m 6.3838 0.26627   4 0.13313 0.0417 6.014073381, 6.645677632 0.45
BXD61 f 6.2719 0.94679   5 0.42342 0.151 5.043097956, 7.610235395 0.48
BXD61 m 6.1426 1.1396   5 0.50963 0.1855 4.49994227, 7.398160537 0.13
BXD62 f 7.5413 5.4656   5 2.4443 0.7248 4.094735199, 17.17221942 2.09
BXD62 m 5.124 0.61281   5 0.27405 0.1196 4.04579512, 5.490551392 -1.23
BXD65 f 5.3429 0.38972   3 0.225 0.0729 4.894914816, 5.603906213 -0.7
BXD65 m 6.0019 0.76323   5 0.34133 0.1272 4.675675451, 6.618637867 -0.06
BXD66 f 5.191 1.1438   2   0.80877 0.2203 4.382210913, 5.999749218 -0.89
BXD66 m 6.6462 1.6428   2   1.1616 0.2472 5.484538686, 7.807765527 0.8
BXD68 f 6.2734 1.6427   2   1.1616 0.2619 5.111804184, 7.434946938 0.48
BXD68 m 6.0655 0.44853   3 0.25896 0.0739 5.688226379, 6.561410621 0.03
BXD69 f 5.436 0.55877   4 0.27939 0.1028 4.683785568, 5.918363166 -0.58
BXD69 m 5.4498 0.89642   5 0.40089 0.1645 4.222957333, 6.521378265 -0.79
BXD70 f 6.2248 1.1258   5 0.50349 0.1809 5.454403638, 8.191813947 0.42
BXD70 m 5.7128 0.9878   5 0.44176 0.1729 4.833451257, 7.340871734 -0.44
BXD71 m 5.3256 0.0   1   0.0 0.0 5.325585591, 5.325585591 -0.96
BXD73 f 5.8828 0.57705   5 0.25806 0.0981 5.319793299, 6.702921902 -0.01
BXD73 m 6.0314 0.50881   5 0.22755 0.0844 5.375217959, 6.659951903 -0.02
BXD75 f 5.9884 0.81925   5 0.36638 0.1368 5.148946275, 7.075407942 0.12
BXD75 m 5.5931 0.65971   5 0.29503 0.118 4.631569791, 6.273923397 -0.6
BXD77 f 6.3098 1.1158   2   0.78897 0.1768 5.520803299, 7.098747369 0.53
BXD77 m 5.256 0.47258   2   0.33416 0.0899 4.92185976, 5.59018523 -1.05
BXD8 f 5.5675 0.4527   5 0.20245 0.0813 5.01366714, 5.956126457 -0.41
BXD8 m 5.8983 0.54256   5 0.24264 0.092 5.011569694, 6.390271201 -0.2
BXD80 f 6.5281 0.42255   5 0.18897 0.0647 6.167161982, 7.237125524 0.81
BXD80 m 6.6492 0.84588   5 0.37829 0.1272 5.620264305, 7.943442113 0.8
BXD81 f 5.1482 0.6634   5 0.29668 0.1289 4.364689903, 5.857918612 -0.94
BXD81 m 5.7483 0.97334   5 0.43529 0.1693 4.482451541, 7.071679199 -0.4
BXD84 f 6.1507 0.98899   5 0.44229 0.1608 4.99506224, 7.533294427 0.33
BXD84 m 6.0265 0.71252   5 0.31865 0.1182 5.198355229, 6.730490943 -0.03
BXD85 f 6.9225 0.8235   2   0.58231 0.119 6.340145333, 7.504756699 1.31
BXD85 m 6.1387 0.46855   2   0.33131 0.0763 5.807401075, 6.470026122 0.12
BXD86 f 7.3292 6.0762   5 2.7173 0.829 3.880918844, 18.10421344 1.82
BXD86 m 6.2221 2.6505   4 1.3252 0.426 4.437668139, 10.12699473 0.23
BXD87 f 5.8439 0.67738   5 0.30293 0.1159 5.247194872, 6.839686913 -0.06
BXD87 m 5.922 0.84526   5 0.37801 0.1427 4.785102931, 7.049457576 -0.16
BXD89 f 5.8775 0.83234   5 0.37223 0.1416 4.91388338, 7.013809409 -0.02
BXD89 m 5.4401 0.93499   5 0.41814 0.1719 4.462185156, 6.726995637 -0.81
BXD90 f 5.5277 0.61225   3 0.35348 0.1108 4.97587871, 6.186301445 -0.46
BXD90 m 6.1159 0.4679   3 0.27014 0.0765 5.606018865, 6.525593744 0.09
BXD92 f 6.3561 0.0   1   0.0 0.0 6.356093072, 6.356093072 0.59
BXD92 m 6.0603 0.0   1   0.0 0.0 6.060298024, 6.060298024 0.02
BXD96 f 4.7775 0.47489   5 0.21238 0.0994 4.310201077, 5.453544784 -1.41
BXD96 m 7.4932 3.5843   5 1.603 0.4783 5.465753721, 13.83953668 1.92
BXD97 f 4.8928 1.0718   5 0.47931 0.219 3.555111882, 6.080388464 -1.27
BXD97 m 5.6356 1.3933   4 0.69665 0.2472 3.927867292, 7.130099537 -0.55
BXD98 f 5.1444 0.83883   2   0.59314 0.1631 4.551214524, 5.737499549 -0.95
BXD98 m 4.8324 1.0115   4 0.50576 0.2093 3.862929296, 6.175685187 -1.61
C57BL/6J f 6.8503 0.62979   5 0.28165 0.0919 6.111688722, 7.659759178 1.21
C57BL/6J m 7.9306 0.54662   5 0.24446 0.0689 7.18937859, 8.502746773 2.51
DBA/2J f 4.7708 0.71705   5 0.32067 0.1503 3.764673433, 5.575071265 -1.42
DBA/2J m 4.7341 0.75188   5 0.33625 0.1588 3.654937423, 5.725876394 -1.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 6.1034 0.6726 7.4264 4.7805
BXD100 m 6.2579 0.6726 7.5809 4.935
BXD101 f 6.6811 0.8683 8.389 4.9732
BXD101 m 5.9548 0.752 7.4339 4.4758
BXD102 f 6.6789 0.6726 8.0019 5.356
BXD102 m 6.1406 0.6726 7.4635 4.8176
BXD11 f 4.4108 0.6726 5.7337 3.0879
BXD11 m 4.8739 0.6726 6.1969 3.551
BXD13 f 6.0286 0.6726 7.3515 4.7056
BXD13 m 6.5024 0.6726 7.8253 5.1795
BXD14 f 5.8158 0.6726 7.1387 4.4929
BXD14 m 5.7698 0.6726 7.0927 4.4469
BXD15 f 5.6762 0.6726 6.9991 4.3532
BXD15 m 6.4982 0.6726 7.8212 5.1753
BXD16 f 5.8124 0.6726 7.1353 4.4895
BXD16 m 6.0719 0.6726 7.3948 4.7489
BXD2 f 4.5792 0.6726 5.9021 3.2562
BXD2 m 6.8433 0.6726 8.1662 5.5203
BXD21 f 6.0037 0.6726 7.3266 4.6808
BXD21 m 5.394 0.614 6.6017 4.1863
BXD27 f 5.799 0.6726 7.1219 4.476
BXD27 m 5.7862 0.6726 7.1091 4.4633
BXD28 f 5.3104 0.6726 6.6334 3.9875
BXD28 m 5.0332 0.6726 6.3562 3.7103
BXD31 f 6.5456 0.6726 7.8686 5.2227
BXD31 m 6.6951 0.752 8.1742 5.216
BXD32 f 5.2479 0.6726 6.5709 3.925
BXD32 m 5.0188 0.6726 6.3418 3.6959
BXD39 f 5.0821 0.6726 6.4051 3.7592
BXD39 m 5.7161 0.6726 7.039 4.3932
BXD40 f 6.114 0.6726 7.4369 4.791
BXD40 m 6.0422 0.6726 7.3651 4.7192
BXD42 f 6.0323 0.6726 7.3553 4.7094
BXD42 m 6.705 0.6726 8.028 5.3821
BXD43 f 5.5238 0.6726 6.8467 4.2009
BXD43 m 6.0585 0.6726 7.3814 4.7356
BXD44 f 6.3536 0.6726 7.6766 5.0307
BXD44 m 5.6915 0.6726 7.0144 4.3686
BXD48 f 5.0834 0.6726 6.4063 3.7604
BXD48 m 7.7898 0.6726 9.1127 6.4668
BXD49 f 6.6595 0.752 8.1386 5.1804
BXD49 m 6.4032 0.6726 7.7262 5.0803
BXD50 f 5.6559 0.6726 6.9788 4.333
BXD50 m 6.5616 0.6726 7.8846 5.2387
BXD51 f 6.1991 0.6726 7.522 4.8762
BXD51 m 6.425 0.6726 7.7479 5.1021
BXD6 f 7.845 0.6726 9.1679 6.522
BXD6 m 6.3838 0.752 7.8629 4.9047
BXD61 f 6.2719 0.6726 7.5948 4.9489
BXD61 m 6.1426 0.6726 7.4655 4.8197
BXD62 f 7.5413 0.6726 8.8642 6.2184
BXD62 m 5.124 0.6726 6.4469 3.801
BXD65 f 5.3429 0.8683 7.0508 3.635
BXD65 m 6.0019 0.6726 7.3248 4.679
BXD66 f 5.191 1.0635 7.2827 3.0992
BXD66 m 6.6462 1.0635 8.7379 4.5544
BXD68 f 6.2734 1.0635 8.3651 4.1816
BXD68 m 6.0655 0.8683 7.7734 4.3576
BXD69 f 5.436 0.752 6.9151 3.9569
BXD69 m 5.4498 0.6726 6.7728 4.1269
BXD70 f 6.2248 0.6726 7.5477 4.9019
BXD70 m 5.7128 0.6726 7.0358 4.3899
BXD73 f 5.8828 0.6726 7.2057 4.5599
BXD73 m 6.0314 0.6726 7.3543 4.7085
BXD75 f 5.9884 0.6726 7.3113 4.6655
BXD75 m 5.5931 0.6726 6.916 4.2701
BXD77 f 6.3098 1.0635 8.4015 4.218
BXD77 m 5.256 1.0635 7.3478 3.1643
BXD8 f 5.5675 0.6726 6.8905 4.2446
BXD8 m 5.8983 0.6726 7.2212 4.5754
BXD80 f 6.5281 0.6726 7.851 5.2051
BXD80 m 6.6492 0.6726 7.9721 5.3262
BXD81 f 5.1482 0.6726 6.4711 3.8253
BXD81 m 5.7483 0.6726 7.0713 4.4254
BXD84 f 6.1507 0.6726 7.4737 4.8278
BXD84 m 6.0265 0.6726 7.3494 4.7036
BXD85 f 6.9225 1.0635 9.0142 4.8307
BXD85 m 6.1387 1.0635 8.2305 4.047
BXD86 f 7.3292 0.6726 8.6521 6.0062
BXD86 m 6.2221 0.752 7.7012 4.743
BXD87 f 5.8439 0.6726 7.1669 4.521
BXD87 m 5.922 0.6726 7.2449 4.5991
BXD89 f 5.8775 0.6726 7.2004 4.5545
BXD89 m 5.4401 0.6726 6.763 4.1171
BXD90 f 5.5277 0.8683 7.2356 3.8198
BXD90 m 6.1159 0.8683 7.8238 4.408
BXD96 f 4.7775 0.6726 6.1004 3.4546
BXD96 m 7.4932 0.6726 8.8161 6.1703
BXD97 f 4.8928 0.6726 6.2158 3.5699
BXD97 m 5.6356 0.752 7.1147 4.1565
BXD98 f 5.1444 1.0635 7.2361 3.0526
BXD98 m 4.8324 0.752 6.3115 3.3533
C57BL/6J f 6.8503 0.6726 8.1732 5.5273
C57BL/6J m 7.9306 0.6726 9.2536 6.6077
DBA/2J f 4.7708 0.6726 6.0937 3.4479
DBA/2J m 4.7341 0.6726 6.057 3.4111


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 6.1807 0.4756 7.1161 5.2452
BXD101 both 6.318 0.5743 7.4476 5.1883
BXD102 both 6.4098 0.4756 7.3452 5.4743
BXD11 both 4.6424 0.4756 5.5778 3.7069
BXD13 both 6.2655 0.4756 7.2009 5.33
BXD14 both 5.7928 0.4756 6.7283 4.8573
BXD15 both 6.0872 0.4756 7.0226 5.1517
BXD16 both 5.9421 0.4756 6.8776 5.0067
BXD2 both 5.7112 0.4756 6.6467 4.7758
BXD21 both 5.6988 0.4554 6.5945 4.8032
BXD27 both 5.7926 0.4756 6.728 4.8571
BXD28 both 5.1718 0.4756 6.1073 4.2364
BXD31 both 6.6203 0.5044 7.6125 5.6281
BXD32 both 5.1334 0.4756 6.0689 4.1979
BXD39 both 5.3991 0.4756 6.3346 4.4637
BXD40 both 6.0781 0.4756 7.0135 5.1426
BXD42 both 6.3687 0.4756 7.3041 5.4332
BXD43 both 5.7912 0.4756 6.7266 4.8557
BXD44 both 6.0226 0.4756 6.958 5.0871
BXD48 both 6.4366 0.4756 7.372 5.5011
BXD49 both 6.5314 0.5044 7.5236 5.5392
BXD50 both 6.1088 0.4756 7.0442 5.1733
BXD51 both 6.3121 0.4756 7.2475 5.3766
BXD6 both 7.1144 0.5044 8.1066 6.1222
BXD61 both 6.2072 0.4756 7.1427 5.2718
BXD62 both 6.3326 0.4756 7.2681 5.3972
BXD65 both 5.6724 0.5492 6.7526 4.5922
BXD66 both 5.9186 0.752 7.3977 4.4395
BXD68 both 6.1694 0.6865 7.5196 4.8192
BXD69 both 5.4429 0.5044 6.4351 4.4507
BXD70 both 5.9688 0.4756 6.9043 5.0334
BXD73 both 5.9571 0.4756 6.8925 5.0216
BXD75 both 5.7907 0.4756 6.7262 4.8553
BXD77 both 5.7829 0.752 7.262 4.3038
BXD8 both 5.7329 0.4756 6.6684 4.7975
BXD80 both 6.5886 0.4756 7.5241 5.6532
BXD81 both 5.4483 0.4756 6.3837 4.5128
BXD84 both 6.0886 0.4756 7.0241 5.1532
BXD85 both 6.5306 0.752 8.0097 5.0515
BXD86 both 6.7756 0.5044 7.7678 5.7834
BXD87 both 5.883 0.4756 6.8184 4.9475
BXD89 both 5.6588 0.4756 6.5942 4.7233
BXD90 both 5.8218 0.614 7.0294 4.6141
BXD96 both 6.1354 0.4756 7.0708 5.1999
BXD97 both 5.2642 0.5044 6.2564 4.272
BXD98 both 4.9884 0.6512 6.2693 3.7074
C57BL/6J both 7.3905 0.4756 8.3259 6.455
DBA/2J both 4.7524 0.4756 5.6879 3.817




  GWAS USING LINEAR MIXED MODELS