Project measure / variable:   Crusio1   rad_pct_R

ID, description, units MPD:62078   rad_pct_R   percentage of hippocampus that is stratum radiatum   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
Procedure histopathology
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Crusio1 - percentage of hippocampus that is stratum radiatum right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means26.38   % 26.79   %
Median of the strain means26.369   % 26.699   %
SD of the strain means± 1.069 ± 1.1546
Coefficient of variation (CV)0.0405 0.0431
Min–max range of strain means23.921   –   28.708   % 24.044   –   28.962   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.7294 4.7294 2.7724 0.0968
strain 47 422.8845 8.9975 5.2745 < 0.0001
sex:strain 47 71.0649 1.512 0.8864 0.6855
Residuals 343 585.1117 1.7059


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 27.18 0.0   1   0.0 0.0 27.18041931, 27.18041931 0.75
BXD1 m 28.336 0.0   1   0.0 0.0 28.33616611, 28.33616611 1.34
BXD100 f 27.475 0.94791   5 0.42392 0.0345 26.22547825, 28.21337594 1.02
BXD100 m 27.274 1.1723   5 0.52425 0.043 25.36995607, 28.53410839 0.42
BXD101 f 26.771 0.55208   3 0.31874 0.0206 26.44373609, 27.40841793 0.37
BXD101 m 26.709 0.62288   4 0.31144 0.0233 25.80316396, 27.22562875 -0.07
BXD102 f 26.293 1.2613   5 0.56406 0.048 24.92112982, 28.11702715 -0.08
BXD102 m 25.442 1.1902   5 0.53226 0.0468 24.09166324, 26.94596578 -1.17
BXD11 f 25.516 1.9827   5 0.88668 0.0777 22.07314429, 27.1072862 -0.81
BXD11 m 26.884 1.6164   5 0.72287 0.0601 25.38459624, 29.59202824 0.08
BXD13 f 24.402 1.2243   5 0.54752 0.0502 22.27976644, 25.38096993 -1.85
BXD13 m 25.189 1.2133   5 0.54262 0.0482 23.19559134, 26.12904974 -1.39
BXD14 f 27.269 1.1419   5 0.51069 0.0419 26.00760635, 29.06433557 0.83
BXD14 m 27.299 0.43357   5 0.1939 0.0159 26.80011171, 27.93846196 0.44
BXD15 f 26.191 0.64617   5 0.28898 0.0247 25.11014723, 26.68385487 -0.18
BXD15 m 26.954 0.92004   5 0.41145 0.0341 25.72847047, 28.05847948 0.14
BXD16 f 25.753 2.1763   5 0.97326 0.0845 23.14819694, 28.56419547 -0.59
BXD16 m 26.023 0.35894   5 0.16052 0.0138 25.52266915, 26.4085633 -0.66
BXD18 f 28.175 0.0   1   0.0 0.0 28.175022, 28.175022 1.68
BXD18 m 25.474 0.0   1   0.0 0.0 25.47400887, 25.47400887 -1.14
BXD19 f 24.698 0.0   1   0.0 0.0 24.69814517, 24.69814517 -1.57
BXD19 m 27.621 0.0   1   0.0 0.0 27.62058065, 27.62058065 0.72
BXD2 f 28.708 0.78814   5 0.35247 0.0275 27.66481092, 29.65513453 2.18
BXD2 m 27.904 2.4859   5 1.1117 0.0891 25.2726748, 31.8036914 0.96
BXD21 f 25.076 0.64754   5 0.28959 0.0258 24.09410388, 25.63256221 -1.22
BXD21 m 25.384 0.69591   6 0.28411 0.0274 24.57078044, 26.27960868 -1.22
BXD27 f 28.587 0.67142   5 0.30027 0.0235 27.45893123, 29.24519106 2.06
BXD27 m 28.188 1.0874   5 0.48631 0.0386 27.05462083, 29.63092057 1.21
BXD28 f 27.84 1.403   5 0.62744 0.0504 26.75846649, 30.24298993 1.37
BXD28 m 27.873 1.0032   5 0.44865 0.036 26.44128684, 28.94272994 0.94
BXD31 f 26.746 1.1059   5 0.49456 0.0413 24.92465317, 27.9045066 0.34
BXD31 m 26.641 1.0484   4 0.52418 0.0394 25.29629303, 27.75525556 -0.13
BXD32 f 26.94 0.62626   5 0.28007 0.0232 26.0732411, 27.65096781 0.52
BXD32 m 25.994 2.0783   5 0.92947 0.08 22.44722546, 27.53047073 -0.69
BXD33 m 28.662 0.0   1   0.0 0.0 28.66172129, 28.66172129 1.62
BXD34 f 25.615 0.0   1   0.0 0.0 25.6145995, 25.6145995 -0.72
BXD34 m 28.698 0.0   1   0.0 0.0 28.69758263, 28.69758263 1.65
BXD39 f 25.903 1.3092   5 0.58549 0.0505 24.96877413, 28.04682464 -0.45
BXD39 m 26.893 1.297   5 0.58004 0.0482 25.19169272, 28.43407151 0.09
BXD40 f 26.084 0.83043   5 0.37138 0.0318 24.878962, 26.75152591 -0.28
BXD40 m 25.787 0.8368   5 0.37423 0.0325 24.85058399, 27.13564416 -0.87
BXD42 f 25.396 0.91368   5 0.40861 0.036 24.54384705, 26.63628303 -0.92
BXD42 m 25.461 0.55484   5 0.24813 0.0218 24.77935384, 26.25234441 -1.15
BXD43 f 27.633 1.4864   5 0.66472 0.0538 26.11747164, 29.11848217 1.17
BXD43 m 28.67 1.5904   5 0.71126 0.0555 26.23643474, 30.21508979 1.63
BXD44 f 26.369 0.54624   5 0.24429 0.0207 25.83571994, 27.25534552 -0.01
BXD44 m 25.45 1.1588   5 0.51824 0.0455 24.0432951, 26.54977285 -1.16
BXD48 f 26.846 0.71177   5 0.31831 0.0265 25.90993692, 27.78175248 0.44
BXD48 m 26.896 1.5079   5 0.67433 0.0561 25.58680545, 29.07766409 0.09
BXD49 f 25.505 1.021   4 0.5105 0.04 24.30858586, 26.69472457 -0.82
BXD49 m 26.571 1.5832   5 0.70801 0.0596 24.90749956, 29.13843141 -0.19
BXD50 f 26.918 0.62992   5 0.28171 0.0234 26.11090582, 27.67353191 0.5
BXD50 m 26.557 1.0795   5 0.48277 0.0406 25.31348842, 27.43483669 -0.2
BXD51 f 27.273 0.41834   5 0.18709 0.0153 26.90820545, 27.84235558 0.84
BXD51 m 27.484 1.4385   5 0.64329 0.0523 25.59194532, 29.36654972 0.6
BXD6 f 26.625 0.92284   5 0.41271 0.0347 25.33914192, 27.60815599 0.23
BXD6 m 26.338 1.268   4 0.63401 0.0481 25.34585585, 28.17965327 -0.39
BXD61 f 25.46 0.52746   5 0.23589 0.0207 24.84040895, 26.15539709 -0.86
BXD61 m 24.044 1.2892   5 0.57656 0.0536 21.81533681, 24.89405129 -2.38
BXD62 f 23.921 2.3612   5 1.0559 0.0987 20.69242465, 26.38444401 -2.3
BXD62 m 25.26 1.8688   5 0.83575 0.074 22.31398159, 27.3983845 -1.33
BXD65 f 26.122 1.2382   3 0.71489 0.0474 24.7100519, 27.02401972 -0.24
BXD65 m 26.065 1.1264   5 0.50373 0.0432 24.22305012, 27.02057471 -0.63
BXD66 f 25.94 0.13861   2   0.09801 0.0053 25.84168918, 26.03771584 -0.41
BXD66 m 27.097 0.06432   2   0.04548 0.0024 27.05125241, 27.14221991 0.27
BXD68 f 27.563 0.29851   2   0.21108 0.0108 27.35174631, 27.77389712 1.11
BXD68 m 28.74 1.0962   3 0.63287 0.0381 27.49563795, 29.56219444 1.69
BXD69 f 27.061 0.56471   4 0.28235 0.0209 26.55852499, 27.84161593 0.64
BXD69 m 26.42 1.1096   5 0.49624 0.042 25.08824733, 27.98691786 -0.32
BXD70 f 27.026 1.659   5 0.74195 0.0614 24.53442608, 29.19170335 0.6
BXD70 m 26.279 0.39578   5 0.177 0.0151 25.76200868, 26.82327584 -0.44
BXD71 m 28.889 0.0   1   0.0 0.0 28.88923358, 28.88923358 1.82
BXD73 f 26.7 2.259   5 1.0103 0.0846 23.91834461, 30.09482745 0.3
BXD73 m 26.444 1.1786   5 0.52709 0.0446 24.93768609, 28.17273618 -0.3
BXD75 f 26.772 1.2715   5 0.56863 0.0475 25.80192868, 28.91245278 0.37
BXD75 m 26.06 1.2802   5 0.57251 0.0491 24.2962179, 27.75547675 -0.63
BXD77 f 26.751 1.5995   2   1.131 0.0598 25.61975762, 27.88177968 0.35
BXD77 m 26.699 2.4457   2   1.7294 0.0916 24.96976508, 28.42850645 -0.08
BXD8 f 24.153 1.4955   5 0.66883 0.0619 22.18042341, 26.08197228 -2.08
BXD8 m 25.399 1.1342   5 0.50724 0.0447 24.37249982, 26.72525711 -1.2
BXD80 f 27.658 1.2062   5 0.53945 0.0436 26.1775514, 29.21185779 1.2
BXD80 m 28.125 1.2195   5 0.54539 0.0434 26.92253132, 29.61757491 1.16
BXD81 f 25.666 1.5525   5 0.69431 0.0605 23.90334649, 27.51570624 -0.67
BXD81 m 26.003 0.28805   5 0.12882 0.0111 25.68496602, 26.46386042 -0.68
BXD84 f 26.02 1.7871   5 0.79924 0.0687 23.91978603, 27.65244614 -0.34
BXD84 m 26.046 2.1331   5 0.95394 0.0819 23.72529724, 28.57035763 -0.64
BXD85 f 26.242 0.21732   2   0.15367 0.0083 26.08791096, 26.39524546 -0.13
BXD85 m 28.191 0.2463   2   0.17416 0.0087 28.01733537, 28.36565385 1.21
BXD86 f 25.494 2.3782   5 1.0635 0.0933 22.14050565, 28.33380735 -0.83
BXD86 m 26.873 1.9218   4 0.9609 0.0715 24.89401886, 29.50497641 0.07
BXD87 f 27.389 0.95125   5 0.42541 0.0347 26.26402979, 28.12735735 0.94
BXD87 m 27.929 0.19191   5 0.08583 0.0069 27.68442328, 28.17512275 0.99
BXD89 f 27.414 1.6742   5 0.74874 0.0611 25.54232795, 29.92197978 0.97
BXD89 m 26.926 1.0342   5 0.46251 0.0384 25.1428668, 27.53956754 0.12
BXD90 f 26.002 0.44131   3 0.25479 0.017 25.60580229, 26.47777374 -0.35
BXD90 m 24.805 0.79543   3 0.45924 0.0321 24.21969392, 25.71031833 -1.72
BXD92 f 25.05 0.0   1   0.0 0.0 25.04975306, 25.04975306 -1.24
BXD92 m 26.818 0.0   1   0.0 0.0 26.81774788, 26.81774788 0.02
BXD96 f 25.573 1.4095   5 0.63035 0.0551 24.1227245, 27.79162803 -0.76
BXD96 m 26.338 1.8992   5 0.84935 0.0721 24.27717522, 28.7976551 -0.39
BXD97 f 24.98 2.6319   5 1.177 0.1054 22.09075117, 27.10897595 -1.31
BXD97 m 26.543 1.1615   4 0.58075 0.0438 25.72953649, 28.25210776 -0.21
BXD98 f 26.402 0.26096   2   0.18453 0.0099 26.21704103, 26.58609591 0.02
BXD98 m 27.847 1.912   4 0.95601 0.0687 26.59359287, 30.63828248 0.92
C57BL/6J f 25.852 0.99727   5 0.44599 0.0386 24.44802739, 26.90252875 -0.49
C57BL/6J m 26.0 1.0401   5 0.46516 0.04 25.18153306, 27.65785274 -0.68
DBA/2J f 27.155 0.7016   5 0.31376 0.0258 26.35308657, 28.08044373 0.72
DBA/2J m 28.962 0.89848   5 0.40181 0.031 27.87135582, 30.11558512 1.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 27.4752 0.5841 28.624 26.3263
BXD100 m 27.2743 0.5841 28.4231 26.1254
BXD101 f 26.771 0.7541 28.2542 25.2878
BXD101 m 26.7086 0.653 27.9931 25.4241
BXD102 f 26.2928 0.5841 27.4417 25.1439
BXD102 m 25.4421 0.5841 26.5909 24.2932
BXD11 f 25.516 0.5841 26.6649 24.3672
BXD11 m 26.884 0.5841 28.0328 25.7351
BXD13 f 24.4022 0.5841 25.5511 23.2534
BXD13 m 25.1893 0.5841 26.3382 24.0404
BXD14 f 27.269 0.5841 28.4178 26.1201
BXD14 m 27.2995 0.5841 28.4483 26.1506
BXD15 f 26.1911 0.5841 27.34 25.0422
BXD15 m 26.9544 0.5841 28.1033 25.8055
BXD16 f 25.7534 0.5841 26.9023 24.6045
BXD16 m 26.0232 0.5841 27.1721 24.8743
BXD2 f 28.7077 0.5841 29.8566 27.5588
BXD2 m 27.9039 0.5841 29.0527 26.755
BXD21 f 25.0758 0.5841 26.2247 23.9269
BXD21 m 25.3845 0.5332 26.4332 24.3357
BXD27 f 28.5865 0.5841 29.7354 27.4376
BXD27 m 28.188 0.5841 29.3368 27.0391
BXD28 f 27.84 0.5841 28.9889 26.6911
BXD28 m 27.8732 0.5841 29.0221 26.7244
BXD31 f 26.7457 0.5841 27.8946 25.5968
BXD31 m 26.6411 0.653 27.9256 25.3567
BXD32 f 26.9404 0.5841 28.0892 25.7915
BXD32 m 25.9938 0.5841 27.1427 24.845
BXD39 f 25.9035 0.5841 27.0524 24.7546
BXD39 m 26.8931 0.5841 28.0419 25.7442
BXD40 f 26.0841 0.5841 27.233 24.9353
BXD40 m 25.7869 0.5841 26.9357 24.638
BXD42 f 25.3964 0.5841 26.5453 24.2475
BXD42 m 25.4607 0.5841 26.6095 24.3118
BXD43 f 27.6331 0.5841 28.782 26.4843
BXD43 m 28.6697 0.5841 29.8185 27.5208
BXD44 f 26.3685 0.5841 27.5174 25.2197
BXD44 m 25.4495 0.5841 26.5984 24.3007
BXD48 f 26.8457 0.5841 27.9946 25.6969
BXD48 m 26.8965 0.5841 28.0454 25.7476
BXD49 f 25.5053 0.653 26.7898 24.2209
BXD49 m 26.5707 0.5841 27.7195 25.4218
BXD50 f 26.9181 0.5841 28.067 25.7693
BXD50 m 26.5573 0.5841 27.7062 25.4084
BXD51 f 27.2728 0.5841 28.4217 26.124
BXD51 m 27.4844 0.5841 28.6332 26.3355
BXD6 f 26.6246 0.5841 27.7735 25.4757
BXD6 m 26.3377 0.653 27.6222 25.0532
BXD61 f 25.4604 0.5841 26.6092 24.3115
BXD61 m 24.0442 0.5841 25.193 22.8953
BXD62 f 23.9208 0.5841 25.0697 22.772
BXD62 m 25.2596 0.5841 26.4084 24.1107
BXD65 f 26.1217 0.7541 27.6049 24.6385
BXD65 m 26.0645 0.5841 27.2134 24.9157
BXD66 f 25.9397 0.9235 27.7562 24.1232
BXD66 m 27.0967 0.9235 28.9133 25.2802
BXD68 f 27.5628 0.9235 29.3793 25.7463
BXD68 m 28.7402 0.7541 30.2234 27.257
BXD69 f 27.0605 0.653 28.345 25.7761
BXD69 m 26.4203 0.5841 27.5692 25.2714
BXD70 f 27.0257 0.5841 28.1746 25.8768
BXD70 m 26.2791 0.5841 27.428 25.1302
BXD73 f 26.6999 0.5841 27.8488 25.551
BXD73 m 26.4441 0.5841 27.5929 25.2952
BXD75 f 26.7724 0.5841 27.9212 25.6235
BXD75 m 26.0595 0.5841 27.2084 24.9107
BXD77 f 26.7508 0.9235 28.5673 24.9342
BXD77 m 26.6991 0.9235 28.5157 24.8826
BXD8 f 24.153 0.5841 25.3019 23.0042
BXD8 m 25.3991 0.5841 26.548 24.2503
BXD80 f 27.6584 0.5841 28.8072 26.5095
BXD80 m 28.1252 0.5841 29.2741 26.9764
BXD81 f 25.666 0.5841 26.8149 24.5171
BXD81 m 26.0026 0.5841 27.1514 24.8537
BXD84 f 26.0201 0.5841 27.169 24.8712
BXD84 m 26.0464 0.5841 27.1953 24.8975
BXD85 f 26.2416 0.9235 28.0581 24.4251
BXD85 m 28.1915 0.9235 30.008 26.375
BXD86 f 25.4938 0.5841 26.6427 24.345
BXD86 m 26.8735 0.653 28.158 25.589
BXD87 f 27.3892 0.5841 28.5381 26.2404
BXD87 m 27.9289 0.5841 29.0778 26.7801
BXD89 f 27.4144 0.5841 28.5633 26.2655
BXD89 m 26.9261 0.5841 28.075 25.7773
BXD90 f 26.0023 0.7541 27.4855 24.5191
BXD90 m 24.8046 0.7541 26.2877 23.3214
BXD96 f 25.5727 0.5841 26.7216 24.4238
BXD96 m 26.338 0.5841 27.4869 25.1892
BXD97 f 24.9798 0.5841 26.1287 23.8309
BXD97 m 26.5431 0.653 27.8276 25.2586
BXD98 f 26.4016 0.9235 28.2181 24.585
BXD98 m 27.8472 0.653 29.1317 26.5627
C57BL/6J f 25.8521 0.5841 27.001 24.7033
C57BL/6J m 26.0005 0.5841 27.1493 24.8516
DBA/2J f 27.1547 0.5841 28.3036 26.0058
DBA/2J m 28.9622 0.5841 30.111 27.8133


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 27.3747 0.413 28.1871 26.5623
BXD101 both 26.7398 0.4988 27.7208 25.7588
BXD102 both 25.8674 0.413 26.6798 25.0551
BXD11 both 26.2 0.413 27.0124 25.3876
BXD13 both 24.7958 0.413 25.6082 23.9834
BXD14 both 27.2842 0.413 28.0966 26.4719
BXD15 both 26.5727 0.413 27.3851 25.7604
BXD16 both 25.8883 0.413 26.7007 25.0759
BXD2 both 28.3058 0.413 29.1181 27.4934
BXD21 both 25.2301 0.3954 26.0079 24.4523
BXD27 both 28.3872 0.413 29.1996 27.5749
BXD28 both 27.8566 0.413 28.669 27.0442
BXD31 both 26.6934 0.4381 27.5551 25.8318
BXD32 both 26.4671 0.413 27.2795 25.6547
BXD39 both 26.3983 0.413 27.2106 25.5859
BXD40 both 25.9355 0.413 26.7479 25.1231
BXD42 both 25.4285 0.413 26.2409 24.6162
BXD43 both 28.1514 0.413 28.9638 27.339
BXD44 both 25.909 0.413 26.7214 25.0966
BXD48 both 26.8711 0.413 27.6835 26.0587
BXD49 both 26.038 0.4381 26.8997 25.1763
BXD50 both 26.7377 0.413 27.5501 25.9254
BXD51 both 27.3786 0.413 28.191 26.5662
BXD6 both 26.4812 0.4381 27.3428 25.6195
BXD61 both 24.7523 0.413 25.5646 23.9399
BXD62 both 24.5902 0.413 25.4026 23.7778
BXD65 both 26.0931 0.4769 27.0312 25.1551
BXD66 both 26.5182 0.653 27.8027 25.2337
BXD68 both 28.1515 0.5961 29.3241 26.9789
BXD69 both 26.7404 0.4381 27.6021 25.8788
BXD70 both 26.6524 0.413 27.4648 25.84
BXD73 both 26.572 0.413 27.3844 25.7596
BXD75 both 26.416 0.413 27.2283 25.6036
BXD77 both 26.725 0.653 28.0094 25.4405
BXD8 both 24.7761 0.413 25.5885 23.9637
BXD80 both 27.8918 0.413 28.7042 27.0794
BXD81 both 25.8343 0.413 26.6467 25.0219
BXD84 both 26.0333 0.413 26.8456 25.2209
BXD85 both 27.2165 0.653 28.501 25.9321
BXD86 both 26.1837 0.4381 27.0453 25.322
BXD87 both 27.6591 0.413 28.4715 26.8467
BXD89 both 27.1703 0.413 27.9826 26.3579
BXD90 both 25.4034 0.5332 26.4522 24.3547
BXD96 both 25.9554 0.413 26.7677 25.143
BXD97 both 25.7614 0.4381 26.6231 24.8998
BXD98 both 27.1244 0.5656 28.2368 26.012
C57BL/6J both 25.9263 0.413 26.7387 25.1139
DBA/2J both 28.0584 0.413 28.8708 27.2461




  GWAS USING LINEAR MIXED MODELS