Project measure / variable:   Crusio1   oriens_pct_mean

ID, description, units MPD:62074   oriens_pct_mean   percentage of hippocampus that is stratum oriens   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum oriens mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means31.957   % 31.072   %
Median of the strain means32.03   % 31.376   %
SD of the strain means± 1.8995 ± 1.6258
Coefficient of variation (CV)0.0594 0.0523
Min–max range of strain means28.915   –   36.317   % 27.544   –   34.845   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 49.089 49.089 6.9124 0.0089
strain 47 1051.3061 22.3682 3.1498 < 0.0001
sex:strain 47 265.8782 5.657 0.7966 0.8281
Residuals 343 2435.8302 7.1015


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 32.249 0.0   1   0.0 0.0 32.24871389, 32.24871389 0.15
BXD1 m 29.404 0.0   1   0.0 0.0 29.40350116, 29.40350116 -1.03
BXD100 f 34.137 2.134   5 0.95436 0.0625 32.07345711, 36.56585562 1.15
BXD100 m 33.384 3.1417   5 1.405 0.0941 28.78081693, 37.17346083 1.42
BXD101 f 30.856 2.1197   3 1.2238 0.0687 29.43021624, 33.29150602 -0.58
BXD101 m 31.644 2.7939   4 1.397 0.0883 27.87577051, 34.50596914 0.35
BXD102 f 29.627 4.5781   5 2.0474 0.1545 22.95823182, 35.18377203 -1.23
BXD102 m 32.255 1.9882   5 0.88917 0.0616 30.38388295, 35.6245085 0.73
BXD11 f 33.088 1.8065   5 0.80791 0.0546 31.69535693, 35.7821465 0.6
BXD11 m 33.057 3.4742   5 1.5537 0.1051 28.69229464, 37.5084402 1.22
BXD13 f 29.271 2.4643   5 1.1021 0.0842 26.2986, 32.96943772 -1.41
BXD13 m 27.579 1.7985   5 0.80429 0.0652 24.63403524, 29.11042248 -2.15
BXD14 f 29.616 1.7389   5 0.77765 0.0587 28.2957656, 32.08164141 -1.23
BXD14 m 29.53 2.7176   5 1.2153 0.092 25.40741491, 32.71658484 -0.95
BXD15 f 32.03 1.6786   5 0.75069 0.0524 30.37482348, 34.12985989 0.04
BXD15 m 30.806 1.3247   5 0.59244 0.043 29.71528055, 32.46429268 -0.16
BXD16 f 32.139 2.6512   5 1.1857 0.0825 29.11583547, 35.50458115 0.1
BXD16 m 33.28 3.2102   5 1.4356 0.0965 29.73405817, 37.22798956 1.36
BXD18 f 31.906 0.0   1   0.0 0.0 31.90599362, 31.90599362 -0.03
BXD18 m 31.731 0.0   1   0.0 0.0 31.73124941, 31.73124941 0.41
BXD19 f 32.454 0.0   1   0.0 0.0 32.45368155, 32.45368155 0.26
BXD19 m 29.644 0.0   1   0.0 0.0 29.6442357, 29.6442357 -0.88
BXD2 f 34.021 2.5476   5 1.1393 0.0749 31.03581281, 37.57734767 1.09
BXD2 m 31.602 2.5703   5 1.1495 0.0813 28.37852619, 34.11384472 0.33
BXD21 f 30.449 1.6223   5 0.7255 0.0533 28.56911684, 31.90782411 -0.79
BXD21 m 31.656 1.835   6 0.74912 0.058 29.73405817, 34.37767858 0.36
BXD27 f 29.475 0.85018   5 0.38021 0.0288 28.38029556, 30.59971857 -1.31
BXD27 m 29.309 2.9115   5 1.3021 0.0993 24.53537258, 32.42636179 -1.08
BXD28 f 30.499 2.0458   5 0.9149 0.0671 26.90549431, 31.72497455 -0.77
BXD28 m 30.616 0.81122   5 0.36279 0.0265 29.33992213, 31.57681453 -0.28
BXD31 f 29.537 2.5687   5 1.1488 0.087 26.32856684, 33.21121018 -1.27
BXD31 m 27.544 2.0931   4 1.0465 0.076 26.27671166, 30.66985625 -2.17
BXD32 f 33.628 2.346   5 1.0492 0.0698 31.65591755, 36.2211382 0.88
BXD32 m 32.742 2.9464   5 1.3176 0.09 29.07373793, 36.95791907 1.03
BXD33 m 32.49 0.0   1   0.0 0.0 32.49016006, 32.49016006 0.87
BXD34 f 34.754 0.0   1   0.0 0.0 34.75369679, 34.75369679 1.47
BXD34 m 31.323 0.0   1   0.0 0.0 31.32277014, 31.32277014 0.15
BXD39 f 32.093 3.378   5 1.5107 0.1053 29.03021012, 37.22971548 0.07
BXD39 m 30.151 2.722   5 1.2173 0.0903 27.12348367, 33.83038391 -0.57
BXD40 f 29.922 2.6658   5 1.1922 0.0891 25.82769541, 33.17371574 -1.07
BXD40 m 28.043 2.6419   5 1.1815 0.0942 24.48917559, 31.4824632 -1.86
BXD42 f 30.846 1.9499   5 0.872 0.0632 27.81810144, 32.58142182 -0.58
BXD42 m 31.171 1.4784   5 0.66114 0.0474 29.34804702, 33.18476052 0.06
BXD43 f 33.472 2.9569   5 1.3224 0.0883 31.14513864, 37.56738992 0.8
BXD43 m 32.97 3.2706   5 1.4627 0.0992 29.00380092, 36.56345381 1.17
BXD44 f 31.714 1.425   5 0.63727 0.0449 29.86031552, 33.72685341 -0.13
BXD44 m 33.025 2.3837   5 1.066 0.0722 30.21956628, 35.35727132 1.2
BXD48 f 33.264 3.3895   5 1.5158 0.1019 29.02532162, 37.06959415 0.69
BXD48 m 32.782 3.0369   5 1.3581 0.0926 30.17205985, 37.01628484 1.05
BXD49 f 31.617 4.0951   4 2.0475 0.1295 26.73785508, 36.52141289 -0.18
BXD49 m 29.985 3.7121   5 1.6601 0.1238 26.12489993, 33.83684491 -0.67
BXD50 f 32.73 1.8079   5 0.80852 0.0552 30.91628229, 35.3420808 0.41
BXD50 m 29.772 0.372   5 0.16636 0.0125 29.42613234, 30.37322818 -0.8
BXD51 f 32.538 2.3614   5 1.056 0.0726 30.09161937, 35.11303546 0.31
BXD51 m 31.798 3.1002   5 1.3865 0.0975 27.55223501, 34.95973955 0.45
BXD6 f 30.606 1.7391   5 0.77775 0.0568 28.44779482, 32.41054555 -0.71
BXD6 m 28.868 2.9645   4 1.4822 0.1027 25.73492645, 32.06801826 -1.36
BXD61 f 28.915 1.5662   5 0.70042 0.0542 26.78379924, 31.01905057 -1.6
BXD61 m 30.286 3.4532   5 1.5443 0.114 26.522852, 35.55586363 -0.48
BXD62 f 31.683 1.8042   5 0.80685 0.0569 30.49660987, 34.85760276 -0.14
BXD62 m 30.639 3.8493   5 1.7214 0.1256 27.42858641, 35.47220246 -0.27
BXD65 f 31.395 1.3134   3 0.7583 0.0418 29.90866482, 32.39979284 -0.3
BXD65 m 31.502 0.79591   5 0.35594 0.0253 30.77030319, 32.82376867 0.26
BXD66 f 36.317 0.47461   2   0.3356 0.0131 35.98117503, 36.65238167 2.3
BXD66 m 31.942 3.5277   2   2.4945 0.1104 29.44711021, 34.43608743 0.54
BXD68 f 30.667 3.6828   2   2.6041 0.1201 28.06277514, 33.27103269 -0.68
BXD68 m 28.898 1.9958   3 1.1523 0.0691 26.75624161, 30.70564995 -1.34
BXD69 f 29.495 5.6614   4 2.8307 0.1919 26.10929388, 37.96529281 -1.3
BXD69 m 29.404 1.8749   5 0.8385 0.0638 26.86594687, 31.92701624 -1.03
BXD70 f 29.971 2.0525   5 0.9179 0.0685 27.50045537, 32.33026951 -1.05
BXD70 m 30.5 3.0784   5 1.3767 0.1009 27.99206748, 35.40905701 -0.35
BXD71 m 31.881 0.0   1   0.0 0.0 31.8806329, 31.8806329 0.5
BXD73 f 35.61 1.8541   5 0.82917 0.0521 33.2914811, 37.94580857 1.92
BXD73 m 32.324 1.1625   5 0.51987 0.036 30.3500313, 33.20012937 0.77
BXD75 f 30.504 0.87638   5 0.39193 0.0287 29.67669946, 31.72944767 -0.76
BXD75 m 31.355 2.9844   5 1.3346 0.0952 28.48022622, 35.8511568 0.17
BXD77 f 32.064 2.4297   2   1.7181 0.0758 30.34630292, 33.78241475 0.06
BXD77 m 34.845 1.1396   2   0.80581 0.0327 34.0390981, 35.65072018 2.32
BXD8 f 33.193 3.9117   5 1.7494 0.1178 28.84427837, 37.77627786 0.65
BXD8 m 33.738 4.7737   5 2.1349 0.1415 27.32324034, 38.41227607 1.64
BXD80 f 29.659 1.9089   5 0.85367 0.0644 27.71688798, 31.69494936 -1.21
BXD80 m 29.738 1.903   5 0.85105 0.064 26.68772622, 31.4776213 -0.82
BXD81 f 33.699 3.6165   5 1.6174 0.1073 29.04574133, 38.96193021 0.92
BXD81 m 32.844 4.0627   5 1.8169 0.1237 27.72656048, 39.00382009 1.09
BXD84 f 30.096 4.1027   5 1.8348 0.1363 27.92108503, 37.40325845 -0.98
BXD84 m 30.512 2.5778   5 1.1528 0.0845 26.61660133, 32.87016323 -0.34
BXD85 f 32.766 2.1005   2   1.4853 0.0641 31.28030458, 34.25085438 0.43
BXD85 m 32.21 1.0313   2   0.72927 0.032 31.48029998, 32.93883672 0.7
BXD86 f 32.186 1.0177   5 0.45513 0.0316 30.39427617, 32.74597149 0.12
BXD86 m 30.708 0.9114   4 0.4557 0.0297 29.60648221, 31.4749732 -0.22
BXD87 f 32.759 2.2485   5 1.0056 0.0686 29.78517024, 35.02997111 0.42
BXD87 m 31.572 1.2717   5 0.56871 0.0403 29.7368391, 32.69286142 0.31
BXD89 f 30.467 1.0862   5 0.48578 0.0357 29.04141411, 31.42527574 -0.78
BXD89 m 31.771 2.6303   5 1.1763 0.0828 28.83368363, 35.42378303 0.43
BXD90 f 35.634 3.676   3 2.1223 0.1032 32.89895106, 39.81252616 1.94
BXD90 m 31.548 1.6223   3 0.93665 0.0514 30.4191736, 33.40737844 0.29
BXD92 f 33.186 0.0   1   0.0 0.0 33.18583099, 33.18583099 0.65
BXD92 m 27.601 0.0   1   0.0 0.0 27.60117497, 27.60117497 -2.14
BXD96 f 36.099 1.5137   5 0.67694 0.0419 33.74826665, 37.87700861 2.18
BXD96 m 31.376 1.8444   5 0.82483 0.0588 28.3122964, 32.83020029 0.19
BXD97 f 34.965 3.5519   5 1.5884 0.1016 29.74748524, 37.66110975 1.58
BXD97 m 31.741 0.67839   4 0.33919 0.0214 30.93133807, 32.3570257 0.41
BXD98 f 32.626 8.456   2   5.9793 0.2592 26.64684474, 38.60544679 0.35
BXD98 m 31.712 4.7279   4 2.364 0.1491 27.92955243, 38.4841419 0.39
C57BL/6J f 30.24 2.9523   5 1.3203 0.0976 26.46632538, 34.62191377 -0.9
C57BL/6J m 29.289 2.0381   5 0.91146 0.0696 27.03927289, 31.8095136 -1.1
DBA/2J f 30.979 3.0872   5 1.3806 0.0997 26.41928911, 34.86823879 -0.51
DBA/2J m 30.872 2.2811   5 1.0201 0.0739 27.26356872, 33.2582707 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 34.1369 1.1918 36.481 31.7928
BXD100 m 33.3839 1.1918 35.728 31.0398
BXD101 f 30.8556 1.5386 33.8818 27.8294
BXD101 m 31.6436 1.3324 34.2644 29.0229
BXD102 f 29.6269 1.1918 31.971 27.2828
BXD102 m 32.2546 1.1918 34.5987 29.9105
BXD11 f 33.0876 1.1918 35.4317 30.7435
BXD11 m 33.0565 1.1918 35.4006 30.7124
BXD13 f 29.2714 1.1918 31.6155 26.9273
BXD13 m 27.5792 1.1918 29.9233 25.2352
BXD14 f 29.6163 1.1918 31.9604 27.2722
BXD14 m 29.5304 1.1918 31.8745 27.1863
BXD15 f 32.0296 1.1918 34.3737 29.6855
BXD15 m 30.8063 1.1918 33.1504 28.4622
BXD16 f 32.139 1.1918 34.4831 29.7949
BXD16 m 33.2796 1.1918 35.6237 30.9355
BXD2 f 34.0207 1.1918 36.3648 31.6767
BXD2 m 31.6018 1.1918 33.9459 29.2577
BXD21 f 30.4494 1.1918 32.7935 28.1053
BXD21 m 31.6561 1.0879 33.796 29.5163
BXD27 f 29.4754 1.1918 31.8195 27.1313
BXD27 m 29.3086 1.1918 31.6526 26.9645
BXD28 f 30.4995 1.1918 32.8436 28.1554
BXD28 m 30.6157 1.1918 32.9598 28.2716
BXD31 f 29.5372 1.1918 31.8813 27.1931
BXD31 m 27.5445 1.3324 30.1652 24.9237
BXD32 f 33.628 1.1918 35.9721 31.2839
BXD32 m 32.7421 1.1918 35.0861 30.398
BXD39 f 32.0932 1.1918 34.4372 29.7491
BXD39 m 30.1507 1.1918 32.4948 27.8066
BXD40 f 29.9216 1.1918 32.2657 27.5775
BXD40 m 28.0433 1.1918 30.3874 25.6992
BXD42 f 30.8462 1.1918 33.1903 28.5021
BXD42 m 31.1709 1.1918 33.515 28.8268
BXD43 f 33.4722 1.1918 35.8163 31.1281
BXD43 m 32.9695 1.1918 35.3136 30.6254
BXD44 f 31.7141 1.1918 34.0582 29.37
BXD44 m 33.0249 1.1918 35.369 30.6808
BXD48 f 33.2635 1.1918 35.6076 30.9194
BXD48 m 32.7816 1.1918 35.1257 30.4375
BXD49 f 31.6171 1.3324 34.2378 28.9963
BXD49 m 29.9846 1.1918 32.3287 27.6405
BXD50 f 32.7296 1.1918 35.0736 30.3855
BXD50 m 29.7722 1.1918 32.1162 27.4281
BXD51 f 32.5382 1.1918 34.8823 30.1941
BXD51 m 31.7984 1.1918 34.1425 29.4543
BXD6 f 30.6059 1.1918 32.9499 28.2618
BXD6 m 28.868 1.3324 31.4888 26.2473
BXD61 f 28.9151 1.1918 31.2592 26.571
BXD61 m 30.2858 1.1918 32.6299 27.9417
BXD62 f 31.6829 1.1918 34.027 29.3388
BXD62 m 30.6389 1.1918 32.983 28.2948
BXD65 f 31.3948 1.5386 34.421 28.3686
BXD65 m 31.5022 1.1918 33.8463 29.1581
BXD66 f 36.3168 1.8843 40.0231 32.6104
BXD66 m 31.9416 1.8843 35.6479 28.2353
BXD68 f 30.6669 1.8843 34.3732 26.9606
BXD68 m 28.8981 1.5386 31.9243 25.8719
BXD69 f 29.4945 1.3324 32.1153 26.8738
BXD69 m 29.4044 1.1918 31.7485 27.0603
BXD70 f 29.971 1.1918 32.3151 27.6269
BXD70 m 30.4996 1.1918 32.8437 28.1555
BXD73 f 35.6105 1.1918 37.9545 33.2664
BXD73 m 32.3242 1.1918 34.6683 29.9801
BXD75 f 30.5042 1.1918 32.8483 28.1601
BXD75 m 31.3548 1.1918 33.6989 29.0107
BXD77 f 32.0644 1.8843 35.7707 28.358
BXD77 m 34.8449 1.8843 38.5512 31.1386
BXD8 f 33.1933 1.1918 35.5374 30.8492
BXD8 m 33.7378 1.1918 36.0819 31.3937
BXD80 f 29.6587 1.1918 32.0028 27.3146
BXD80 m 29.7377 1.1918 32.0818 27.3936
BXD81 f 33.6995 1.1918 36.0436 31.3554
BXD81 m 32.8443 1.1918 35.1884 30.5002
BXD84 f 30.0963 1.1918 32.4404 27.7522
BXD84 m 30.5121 1.1918 32.8562 28.168
BXD85 f 32.7656 1.8843 36.4719 29.0592
BXD85 m 32.2096 1.8843 35.9159 28.5032
BXD86 f 32.1858 1.1918 34.5299 29.8417
BXD86 m 30.7082 1.3324 33.3289 28.0874
BXD87 f 32.7593 1.1918 35.1034 30.4152
BXD87 m 31.5725 1.1918 33.9166 29.2284
BXD89 f 30.4668 1.1918 32.8108 28.1227
BXD89 m 31.7708 1.1918 34.1149 29.4267
BXD90 f 35.6339 1.5386 38.6601 32.6076
BXD90 m 31.5483 1.5386 34.5745 28.5221
BXD96 f 36.0986 1.1918 38.4427 33.7545
BXD96 m 31.3763 1.1918 33.7204 29.0322
BXD97 f 34.9649 1.1918 37.309 32.6208
BXD97 m 31.7405 1.3324 34.3613 29.1198
BXD98 f 32.6261 1.8843 36.3325 28.9198
BXD98 m 31.7118 1.3324 34.3325 29.091
C57BL/6J f 30.2404 1.1918 32.5845 27.8963
C57BL/6J m 29.2892 1.1918 31.6333 26.9452
DBA/2J f 30.9788 1.1918 33.3229 28.6347
DBA/2J m 30.8723 1.1918 33.2164 28.5282


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 33.7604 0.8427 35.4179 32.1029
BXD101 both 31.2496 1.0177 33.2513 29.248
BXD102 both 30.9407 0.8427 32.5983 29.2832
BXD11 both 33.0721 0.8427 34.7296 31.4145
BXD13 both 28.4253 0.8427 30.0828 26.7678
BXD14 both 29.5734 0.8427 31.2309 27.9158
BXD15 both 31.4179 0.8427 33.0755 29.7604
BXD16 both 32.7093 0.8427 34.3668 31.0518
BXD2 both 32.8113 0.8427 34.4688 31.1538
BXD21 both 31.0528 0.8068 32.6397 29.4658
BXD27 both 29.392 0.8427 31.0495 27.7344
BXD28 both 30.5576 0.8427 32.2151 28.9001
BXD31 both 28.5408 0.8938 30.2989 26.7828
BXD32 both 33.185 0.8427 34.8426 31.5275
BXD39 both 31.1219 0.8427 32.7795 29.4644
BXD40 both 28.9824 0.8427 30.64 27.3249
BXD42 both 31.0085 0.8427 32.6661 29.351
BXD43 both 33.2208 0.8427 34.8784 31.5633
BXD44 both 32.3695 0.8427 34.027 30.712
BXD48 both 33.0225 0.8427 34.6801 31.365
BXD49 both 30.8008 0.8938 32.5589 29.0428
BXD50 both 31.2509 0.8427 32.9084 29.5933
BXD51 both 32.1683 0.8427 33.8258 30.5108
BXD6 both 29.7369 0.8938 31.495 27.9789
BXD61 both 29.6004 0.8427 31.258 27.9429
BXD62 both 31.1609 0.8427 32.8184 29.5034
BXD65 both 31.4485 0.9731 33.3624 29.5345
BXD66 both 34.1292 1.3324 36.75 31.5084
BXD68 both 29.7825 1.2163 32.1749 27.3901
BXD69 both 29.4495 0.8938 31.2076 27.6914
BXD70 both 30.2353 0.8427 31.8928 28.5778
BXD73 both 33.9673 0.8427 35.6249 32.3098
BXD75 both 30.9295 0.8427 32.587 29.272
BXD77 both 33.4546 1.3324 36.0754 30.8339
BXD8 both 33.4655 0.8427 35.123 31.808
BXD80 both 29.6982 0.8427 31.3557 28.0407
BXD81 both 33.2719 0.8427 34.9294 31.6144
BXD84 both 30.3042 0.8427 31.9617 28.6467
BXD85 both 32.4876 1.3324 35.1083 29.8668
BXD86 both 31.447 0.8938 33.205 29.6889
BXD87 both 32.1659 0.8427 33.8234 30.5084
BXD89 both 31.1188 0.8427 32.7763 29.4612
BXD90 both 33.5911 1.0879 35.7309 31.4512
BXD96 both 33.7375 0.8427 35.395 32.0799
BXD97 both 33.3527 0.8938 35.1108 31.5947
BXD98 both 32.169 1.1539 34.4386 29.8993
C57BL/6J both 29.7648 0.8427 31.4224 28.1073
DBA/2J both 30.9255 0.8427 32.5831 29.268




  GWAS USING LINEAR MIXED MODELS