Project measure / variable:   Crusio1   oriens_pct_L

ID, description, units MPD:62072   oriens_pct_L   percentage of hippocampus that is stratum oriens   [%]  left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum oriens left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means31.984   % 31.013   %
Median of the strain means31.716   % 31.252   %
SD of the strain means± 1.9577 ± 1.8754
Coefficient of variation (CV)0.0612 0.0605
Min–max range of strain means28.86   –   36.546   % 26.524   –   35.598   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 59.1068 59.1068 7.0261 0.0084
strain 47 1209.0347 25.7241 3.0579 < 0.0001
sex:strain 47 344.2663 7.3248 0.8707 0.7128
Residuals 343 2885.4595 8.4124


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 32.784 0.0   1   0.0 0.0 32.78380069, 32.78380069 0.41
BXD1 m 30.513 0.0   1   0.0 0.0 30.51265391, 30.51265391 -0.27
BXD100 f 33.813 1.6465   5 0.73632 0.0487 32.26039867, 35.84746433 0.93
BXD100 m 34.131 3.1637   5 1.4148 0.0927 30.51930507, 38.39370196 1.66
BXD101 f 31.1 3.0369   3 1.7534 0.0976 29.26774864, 34.60599668 -0.45
BXD101 m 32.161 2.8607   4 1.4304 0.089 28.0447259, 34.62748403 0.61
BXD102 f 28.999 4.7239   5 2.1126 0.1629 22.63485048, 34.55085971 -1.52
BXD102 m 32.447 3.386   5 1.5143 0.1044 30.11500073, 38.3092681 0.76
BXD11 f 32.069 2.042   5 0.91323 0.0637 30.37632646, 35.5270539 0.04
BXD11 m 32.683 3.847   5 1.7204 0.1177 27.91133238, 37.93593496 0.89
BXD13 f 28.962 2.626   5 1.1744 0.0907 25.5805024, 32.58461025 -1.54
BXD13 m 27.281 2.2252   5 0.99516 0.0816 24.18557463, 29.80664108 -1.99
BXD14 f 29.703 2.8925   5 1.2936 0.0974 25.69165684, 33.49312716 -1.17
BXD14 m 29.306 2.3451   5 1.0487 0.08 25.83941513, 31.9639219 -0.91
BXD15 f 31.697 1.8817   5 0.84154 0.0594 29.3632199, 34.40272353 -0.15
BXD15 m 30.524 1.6304   5 0.72914 0.0534 28.24220989, 32.79395238 -0.26
BXD16 f 31.793 2.6885   5 1.2023 0.0846 28.19216679, 35.32549288 -0.1
BXD16 m 33.95 4.3022   5 1.924 0.1267 29.5023894, 40.48637695 1.57
BXD18 f 31.696 0.0   1   0.0 0.0 31.69579611, 31.69579611 -0.15
BXD18 m 30.779 0.0   1   0.0 0.0 30.77918425, 30.77918425 -0.12
BXD19 f 32.384 0.0   1   0.0 0.0 32.38366625, 32.38366625 0.2
BXD19 m 29.021 0.0   1   0.0 0.0 29.02093304, 29.02093304 -1.06
BXD2 f 34.042 2.8599   5 1.279 0.084 30.50522278, 37.02679495 1.05
BXD2 m 30.543 1.9327   5 0.86434 0.0633 28.22291134, 32.90398438 -0.25
BXD21 f 30.454 1.4112   5 0.63112 0.0463 28.61095771, 32.16307371 -0.78
BXD21 m 31.283 1.7799   6 0.72663 0.0569 29.5023894, 34.13692664 0.14
BXD27 f 28.86 1.6876   5 0.75474 0.0585 27.72876647, 31.69728944 -1.6
BXD27 m 28.889 3.9405   5 1.7623 0.1364 22.91105172, 33.87928425 -1.13
BXD28 f 29.918 2.4228   5 1.0835 0.081 25.95502142, 32.56249632 -1.06
BXD28 m 30.046 1.0581   5 0.47319 0.0352 28.92632088, 31.62382844 -0.52
BXD31 f 29.671 2.594   5 1.1601 0.0874 26.65699001, 33.30736652 -1.18
BXD31 m 27.259 2.8235   4 1.4117 0.1036 25.34146124, 31.42718354 -2.0
BXD32 f 34.653 3.045   5 1.3617 0.0879 31.86403423, 38.12319821 1.36
BXD32 m 32.55 2.1205   5 0.9483 0.0651 29.79752382, 35.67305086 0.82
BXD33 m 32.979 0.0   1   0.0 0.0 32.97911429, 32.97911429 1.05
BXD34 f 34.506 0.0   1   0.0 0.0 34.50624007, 34.50624007 1.29
BXD34 m 31.252 0.0   1   0.0 0.0 31.25162367, 31.25162367 0.13
BXD39 f 31.914 3.3835   5 1.5131 0.106 28.49327502, 36.56391642 -0.04
BXD39 m 29.818 2.8526   5 1.2757 0.0957 26.50974341, 33.80958682 -0.64
BXD40 f 29.924 2.8619   5 1.2799 0.0956 25.94165777, 34.02606631 -1.05
BXD40 m 27.759 2.358   5 1.0545 0.0849 24.13964882, 30.70867505 -1.74
BXD42 f 31.224 2.3528   5 1.0522 0.0754 27.27343533, 33.30732016 -0.39
BXD42 m 31.498 1.8134   5 0.81098 0.0576 28.90216128, 33.6218472 0.26
BXD43 f 33.397 2.9726   5 1.3294 0.089 30.83913454, 38.07612878 0.72
BXD43 m 33.405 2.9377   5 1.3138 0.0879 30.0062621, 36.54290361 1.28
BXD44 f 31.716 1.2761   5 0.57069 0.0402 30.06206264, 33.52874103 -0.14
BXD44 m 32.717 2.763   5 1.2357 0.0845 28.7788667, 35.78181868 0.91
BXD48 f 33.758 3.827   5 1.7115 0.1134 28.76188585, 38.05520252 0.91
BXD48 m 33.568 2.2731   5 1.0166 0.0677 31.69806357, 36.05771922 1.36
BXD49 f 31.499 3.5775   4 1.7887 0.1136 26.72889705, 35.22646991 -0.25
BXD49 m 29.184 4.2163   5 1.8856 0.1445 24.17464611, 34.19888696 -0.98
BXD50 f 33.16 2.3191   5 1.0371 0.0699 30.46635319, 36.47040399 0.6
BXD50 m 29.249 0.5093   5 0.22776 0.0174 28.55713088, 29.9119663 -0.94
BXD51 f 33.167 2.514   5 1.1243 0.0758 30.51403909, 36.65336145 0.6
BXD51 m 32.14 3.4069   5 1.5236 0.106 27.5978421, 36.27891772 0.6
BXD6 f 30.734 1.4938   5 0.66804 0.0486 29.54750537, 32.78681713 -0.64
BXD6 m 29.16 3.3783   4 1.6892 0.1159 25.8114697, 33.18790223 -0.99
BXD61 f 29.4 1.5288   5 0.68369 0.052 26.97219616, 30.72195074 -1.32
BXD61 m 31.082 3.7269   5 1.6667 0.1199 27.37736157, 37.15501641 0.04
BXD62 f 31.447 1.4164   5 0.63342 0.045 29.53161546, 33.52404121 -0.27
BXD62 m 29.852 2.8781   5 1.2871 0.0964 26.23169062, 33.29254067 -0.62
BXD65 f 30.873 0.49393   3 0.28517 0.016 30.45393403, 31.41746338 -0.57
BXD65 m 31.381 1.6218   5 0.72529 0.0517 29.42668117, 33.74084381 0.2
BXD66 f 35.963 1.1782   2   0.83309 0.0328 35.12967684, 36.7958584 2.03
BXD66 m 31.79 4.3895   2   3.1038 0.1381 28.6864679, 34.89409348 0.41
BXD68 f 30.807 3.0723   2   2.1725 0.0997 28.63495708, 32.97987754 -0.6
BXD68 m 29.077 1.785   3 1.0306 0.0614 27.11830003, 30.61200077 -1.03
BXD69 f 29.527 7.4498   4 3.7249 0.2523 22.47540429, 39.83586152 -1.26
BXD69 m 29.536 2.0001   5 0.89448 0.0677 26.76560767, 31.61030253 -0.79
BXD70 f 30.287 1.2049   5 0.53883 0.0398 28.58608272, 31.49482326 -0.87
BXD70 m 30.015 3.4471   5 1.5416 0.1148 26.36077526, 35.24344949 -0.53
BXD71 m 31.235 0.0   1   0.0 0.0 31.23471393, 31.23471393 0.12
BXD73 f 35.613 1.8308   5 0.81874 0.0514 32.63279735, 36.86641286 1.85
BXD73 m 32.124 1.8334   5 0.81993 0.0571 29.87019157, 34.45670225 0.59
BXD75 f 31.161 1.6335   5 0.73054 0.0524 29.58279147, 33.66953206 -0.42
BXD75 m 31.274 2.4979   5 1.1171 0.0799 28.25283681, 34.00767105 0.14
BXD77 f 32.869 3.7601   2   2.6588 0.1144 30.21034508, 35.52797778 0.45
BXD77 m 35.598 0.38235   2   0.27036 0.0107 35.32723825, 35.86796035 2.44
BXD8 f 32.619 4.1088   5 1.8375 0.126 28.46198544, 38.41093497 0.32
BXD8 m 33.978 5.9866   5 2.6773 0.1762 25.98802417, 40.15747338 1.58
BXD80 f 30.1 2.7876   5 1.2466 0.0926 26.67856552, 33.56618305 -0.96
BXD80 m 29.271 2.1366   5 0.95552 0.073 25.90319793, 31.68571086 -0.93
BXD81 f 34.176 3.8118   5 1.7047 0.1115 30.30205814, 40.36002708 1.12
BXD81 m 33.401 4.5504   5 2.035 0.1362 27.0515715, 39.60162743 1.27
BXD84 f 29.722 3.8279   5 1.7119 0.1288 27.19242757, 36.16855659 -1.16
BXD84 m 30.495 3.1738   5 1.4194 0.1041 25.33584466, 32.95517938 -0.28
BXD85 f 32.468 1.8504   2   1.3084 0.057 31.15974892, 33.77661779 0.25
BXD85 m 31.932 1.4956   2   1.0575 0.0468 30.87398464, 32.98904157 0.49
BXD86 f 32.855 0.8745   5 0.39109 0.0266 31.74142785, 33.66839723 0.44
BXD86 m 30.832 1.2248   4 0.6124 0.0397 29.47196508, 32.14193407 -0.1
BXD87 f 32.872 3.2285   5 1.4438 0.0982 28.02688186, 36.67475588 0.45
BXD87 m 31.847 1.7124   5 0.76582 0.0538 29.76549228, 33.61954598 0.44
BXD89 f 30.681 2.0844   5 0.93219 0.0679 28.16187075, 33.30394879 -0.67
BXD89 m 31.261 3.3562   5 1.5009 0.1074 28.21479861, 36.78798105 0.13
BXD90 f 36.546 3.0554   3 1.764 0.0836 33.69441893, 39.77089608 2.33
BXD90 m 30.254 3.8314   3 2.2121 0.1266 26.14217108, 33.72382579 -0.4
BXD92 f 32.759 0.0   1   0.0 0.0 32.75933195, 32.75933195 0.4
BXD92 m 26.524 0.0   1   0.0 0.0 26.52395681, 26.52395681 -2.39
BXD96 f 36.483 1.8025   5 0.80609 0.0494 33.76000762, 38.78662506 2.3
BXD96 m 32.745 2.4498   5 1.0956 0.0748 28.87511666, 35.30983622 0.92
BXD97 f 34.166 3.0672   5 1.3717 0.0898 29.91036745, 37.63334222 1.11
BXD97 m 31.789 0.91718   4 0.45859 0.0289 30.50115026, 32.60923335 0.41
BXD98 f 32.688 8.7607   2   6.1947 0.268 26.49334821, 38.88282741 0.36
BXD98 m 31.756 4.0378   4 2.0189 0.1272 28.89570084, 37.60260737 0.4
C57BL/6J f 30.239 3.4397   5 1.5383 0.1137 25.06557078, 34.46129334 -0.89
C57BL/6J m 29.141 2.1146   5 0.94569 0.0726 27.05208662, 32.20638383 -1.0
DBA/2J f 31.227 3.296   5 1.474 0.1056 26.67067666, 35.78300627 -0.39
DBA/2J m 31.428 1.9112   5 0.85473 0.0608 28.05256225, 32.48263456 0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 33.8133 1.2971 36.3646 31.262
BXD100 m 34.1313 1.2971 36.6825 31.58
BXD101 f 31.1005 1.6746 34.3942 27.8068
BXD101 m 32.161 1.4502 35.0134 29.3085
BXD102 f 28.9991 1.2971 31.5504 26.4478
BXD102 m 32.4467 1.2971 34.998 29.8955
BXD11 f 32.0693 1.2971 34.6206 29.518
BXD11 m 32.6833 1.2971 35.2345 30.132
BXD13 f 28.9621 1.2971 31.5133 26.4108
BXD13 m 27.2813 1.2971 29.8326 24.73
BXD14 f 29.703 1.2971 32.2543 27.1517
BXD14 m 29.3063 1.2971 31.8575 26.755
BXD15 f 31.6966 1.2971 34.2479 29.1453
BXD15 m 30.5235 1.2971 33.0748 27.9722
BXD16 f 31.793 1.2971 34.3443 29.2417
BXD16 m 33.95 1.2971 36.5012 31.3987
BXD2 f 34.0416 1.2971 36.5929 31.4903
BXD2 m 30.5425 1.2971 33.0938 27.9913
BXD21 f 30.4536 1.2971 33.0049 27.9023
BXD21 m 31.2834 1.1841 33.6124 28.9545
BXD27 f 28.8595 1.2971 31.4108 26.3082
BXD27 m 28.8887 1.2971 31.44 26.3374
BXD28 f 29.9184 1.2971 32.4696 27.3671
BXD28 m 30.0456 1.2971 32.5969 27.4943
BXD31 f 29.6711 1.2971 32.2224 27.1198
BXD31 m 27.2588 1.4502 30.1113 24.4064
BXD32 f 34.6532 1.2971 37.2045 32.1019
BXD32 m 32.5496 1.2971 35.1009 29.9983
BXD39 f 31.9144 1.2971 34.4657 29.3631
BXD39 m 29.8182 1.2971 32.3694 27.2669
BXD40 f 29.9244 1.2971 32.4757 27.3731
BXD40 m 27.7588 1.2971 30.3101 25.2075
BXD42 f 31.2236 1.2971 33.7748 28.6723
BXD42 m 31.4976 1.2971 34.0489 28.9464
BXD43 f 33.3971 1.2971 35.9484 30.8458
BXD43 m 33.4052 1.2971 35.9564 30.8539
BXD44 f 31.7164 1.2971 34.2677 29.1651
BXD44 m 32.7174 1.2971 35.2686 30.1661
BXD48 f 33.7575 1.2971 36.3088 31.2063
BXD48 m 33.5685 1.2971 36.1197 31.0172
BXD49 f 31.4993 1.4502 34.3517 28.6469
BXD49 m 29.1842 1.2971 31.7355 26.6329
BXD50 f 33.1601 1.2971 35.7114 30.6088
BXD50 m 29.2491 1.2971 31.8004 26.6979
BXD51 f 33.1668 1.2971 35.7181 30.6155
BXD51 m 32.1402 1.2971 34.6915 29.5889
BXD6 f 30.7344 1.2971 33.2857 28.1831
BXD6 m 29.1599 1.4502 32.0123 26.3075
BXD61 f 29.3995 1.2971 31.9508 26.8482
BXD61 m 31.0819 1.2971 33.6332 28.5306
BXD62 f 31.4472 1.2971 33.9985 28.8959
BXD62 m 29.8523 1.2971 32.4036 27.301
BXD65 f 30.8728 1.6746 34.1665 27.5791
BXD65 m 31.3811 1.2971 33.9324 28.8298
BXD66 f 35.9628 2.0509 39.9967 31.9288
BXD66 m 31.7903 2.0509 35.8242 27.7563
BXD68 f 30.8074 2.0509 34.8414 26.7735
BXD68 m 29.0771 1.6746 32.3708 25.7835
BXD69 f 29.5275 1.4502 32.3799 26.675
BXD69 m 29.536 1.2971 32.0873 26.9847
BXD70 f 30.2868 1.2971 32.8381 27.7355
BXD70 m 30.015 1.2971 32.5662 27.4637
BXD73 f 35.6132 1.2971 38.1645 33.0619
BXD73 m 32.1239 1.2971 34.6752 29.5726
BXD75 f 31.1612 1.2971 33.7125 28.61
BXD75 m 31.2737 1.2971 33.8249 28.7224
BXD77 f 32.8692 2.0509 36.9031 28.8352
BXD77 m 35.5976 2.0509 39.6315 31.5637
BXD8 f 32.619 1.2971 35.1702 30.0677
BXD8 m 33.9784 1.2971 36.5296 31.4271
BXD80 f 30.0996 1.2971 32.6509 27.5484
BXD80 m 29.2708 1.2971 31.8221 26.7195
BXD81 f 34.1764 1.2971 36.7277 31.6251
BXD81 m 33.4008 1.2971 35.9521 30.8495
BXD84 f 29.7225 1.2971 32.2738 27.1712
BXD84 m 30.4951 1.2971 33.0463 27.9438
BXD85 f 32.4682 2.0509 36.5021 28.4343
BXD85 m 31.9315 2.0509 35.9654 27.8976
BXD86 f 32.8552 1.2971 35.4065 30.3039
BXD86 m 30.8316 1.4502 33.684 27.9792
BXD87 f 32.872 1.2971 35.4233 30.3208
BXD87 m 31.8473 1.2971 34.3986 29.296
BXD89 f 30.6806 1.2971 33.2318 28.1293
BXD89 m 31.2608 1.2971 33.8121 28.7095
BXD90 f 36.5461 1.6746 39.8398 33.2524
BXD90 m 30.2542 1.6746 33.5479 26.9605
BXD96 f 36.4832 1.2971 39.0345 33.932
BXD96 m 32.7452 1.2971 35.2965 30.1939
BXD97 f 34.166 1.2971 36.7173 31.6147
BXD97 m 31.7894 1.4502 34.6418 28.937
BXD98 f 32.6881 2.0509 36.722 28.6542
BXD98 m 31.7562 1.4502 34.6086 28.9037
C57BL/6J f 30.2395 1.2971 32.7907 27.6882
C57BL/6J m 29.1414 1.2971 31.6927 26.5901
DBA/2J f 31.2266 1.2971 33.7778 28.6753
DBA/2J m 31.4284 1.2971 33.9797 28.8772


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 33.9723 0.9172 35.7763 32.1682
BXD101 both 31.6307 1.1076 33.8093 29.4522
BXD102 both 30.7229 0.9172 32.527 28.9189
BXD11 both 32.3763 0.9172 34.1803 30.5723
BXD13 both 28.1217 0.9172 29.9257 26.3177
BXD14 both 29.5046 0.9172 31.3087 27.7006
BXD15 both 31.1101 0.9172 32.9141 29.306
BXD16 both 32.8715 0.9172 34.6755 31.0675
BXD2 both 32.2921 0.9172 34.0961 30.488
BXD21 both 30.8685 0.8781 32.5958 29.1413
BXD27 both 28.8741 0.9172 30.6781 27.0701
BXD28 both 29.982 0.9172 31.786 28.178
BXD31 both 28.465 0.9728 30.3784 26.5515
BXD32 both 33.6014 0.9172 35.4054 31.7974
BXD39 both 30.8663 0.9172 32.6703 29.0623
BXD40 both 28.8416 0.9172 30.6456 27.0376
BXD42 both 31.3606 0.9172 33.1646 29.5566
BXD43 both 33.4011 0.9172 35.2052 31.5971
BXD44 both 32.2169 0.9172 34.0209 30.4129
BXD48 both 33.663 0.9172 35.467 31.859
BXD49 both 30.3417 0.9728 32.2552 28.4283
BXD50 both 31.2046 0.9172 33.0087 29.4006
BXD51 both 32.6535 0.9172 34.4575 30.8495
BXD6 both 29.9471 0.9728 31.8606 28.0337
BXD61 both 30.2407 0.9172 32.0447 28.4367
BXD62 both 30.6497 0.9172 32.4538 28.8457
BXD65 both 31.127 1.0591 33.2101 29.0438
BXD66 both 33.8765 1.4502 36.7289 31.0241
BXD68 both 29.9423 1.3239 32.5462 27.3384
BXD69 both 29.5317 0.9728 31.4452 27.6183
BXD70 both 30.1509 0.9172 31.9549 28.3468
BXD73 both 33.8685 0.9172 35.6726 32.0645
BXD75 both 31.2175 0.9172 33.0215 29.4134
BXD77 both 34.2334 1.4502 37.0858 31.381
BXD8 both 33.2987 0.9172 35.1027 31.4946
BXD80 both 29.6852 0.9172 31.4893 27.8812
BXD81 both 33.7886 0.9172 35.5926 31.9846
BXD84 both 30.1088 0.9172 31.9128 28.3047
BXD85 both 32.1998 1.4502 35.0523 29.3474
BXD86 both 31.8434 0.9728 33.7568 29.9299
BXD87 both 32.3597 0.9172 34.1637 30.5556
BXD89 both 30.9707 0.9172 32.7747 29.1666
BXD90 both 33.4001 1.1841 35.7291 31.0711
BXD96 both 34.6142 0.9172 36.4182 32.8102
BXD97 both 32.9777 0.9728 34.8912 31.0642
BXD98 both 32.2221 1.2559 34.6924 29.7519
C57BL/6J both 29.6904 0.9172 31.4944 27.8864
DBA/2J both 31.3275 0.9172 33.1315 29.5235




  GWAS USING LINEAR MIXED MODELS