Project measure / variable:   Crusio1   pyr_pct_R

ID, description, units MPD:62068   pyr_pct_R   percentage of hippocampus that is stratum pyramidale   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum pyramidale right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means15.37   % 15.319   %
Median of the strain means15.47   % 15.414   %
SD of the strain means± 1.0456 ± 0.96527
Coefficient of variation (CV)0.068 0.063
Min–max range of strain means13.159   –   17.843   % 12.536   –   17.739   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2302 0.2302 0.1185 0.7309
strain 47 271.6365 5.7795 2.9744 < 0.0001
sex:strain 47 54.8968 1.168 0.6011 0.9826
Residuals 343 666.4836 1.9431


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 13.64 0.0   1   0.0 0.0 13.64007151, 13.64007151 -1.65
BXD1 m 12.536 0.0   1   0.0 0.0 12.53603332, 12.53603332 -2.88
BXD100 f 14.685 0.98605   5 0.44097 0.0671 13.68922497, 16.13901993 -0.66
BXD100 m 15.261 1.4069   5 0.62921 0.0922 13.80078902, 17.23735103 -0.06
BXD101 f 15.573 0.81672   3 0.47154 0.0524 14.78728278, 16.41762549 0.19
BXD101 m 15.414 1.5315   4 0.76575 0.0994 13.73828147, 17.38429253 0.1
BXD102 f 15.486 0.99382   5 0.44445 0.0642 13.97919955, 16.58799297 0.11
BXD102 m 15.449 1.4088   5 0.63004 0.0912 13.96884139, 17.05501547 0.13
BXD11 f 15.47 1.6404   5 0.7336 0.106 13.90758524, 18.14714603 0.1
BXD11 m 15.035 1.3861   5 0.6199 0.0922 12.92475667, 16.72446114 -0.29
BXD13 f 15.41 0.90718   5 0.4057 0.0589 14.18153454, 16.27252568 0.04
BXD13 m 15.767 2.1491   5 0.96111 0.1363 13.23474563, 18.58457818 0.46
BXD14 f 14.486 1.9294   5 0.86284 0.1332 11.94959316, 16.59728132 -0.85
BXD14 m 15.153 1.0174   5 0.455 0.0671 14.06244827, 16.63523177 -0.17
BXD15 f 16.137 1.2068   5 0.53969 0.0748 14.89272414, 17.9206817 0.73
BXD15 m 15.787 0.94217   5 0.42135 0.0597 14.8751459, 17.21124261 0.48
BXD16 f 16.495 0.75328   5 0.33688 0.0457 15.3992437, 17.51772665 1.08
BXD16 m 16.134 1.0018   5 0.44802 0.0621 15.04242686, 17.55798926 0.84
BXD18 f 15.574 0.0   1   0.0 0.0 15.57387563, 15.57387563 0.19
BXD18 m 17.739 0.0   1   0.0 0.0 17.73896367, 17.73896367 2.51
BXD19 f 14.294 0.0   1   0.0 0.0 14.29390489, 14.29390489 -1.03
BXD19 m 13.866 0.0   1   0.0 0.0 13.86600224, 13.86600224 -1.51
BXD2 f 14.425 1.5529   5 0.69446 0.1076 12.03559191, 16.09851628 -0.9
BXD2 m 14.353 1.224   5 0.5474 0.0853 13.26341118, 15.95400391 -1.0
BXD21 f 16.568 0.81056   5 0.3625 0.0489 15.6582095, 17.77550107 1.15
BXD21 m 16.668 1.5368   6 0.62738 0.0922 14.71143427, 18.79639659 1.4
BXD27 f 16.617 1.5959   5 0.71371 0.096 14.56270693, 18.66802856 1.19
BXD27 m 15.916 1.34   5 0.59927 0.0842 13.56865954, 16.93306748 0.62
BXD28 f 15.435 0.82445   5 0.36871 0.0534 14.26093386, 16.49624564 0.06
BXD28 m 15.865 1.1869   5 0.53079 0.0748 14.7731415, 17.66108631 0.57
BXD31 f 16.307 1.7623   5 0.78815 0.1081 13.93441917, 18.73888839 0.9
BXD31 m 15.443 0.96209   4 0.48104 0.0623 14.41235437, 16.7176531 0.13
BXD32 f 13.824 0.83749   5 0.37454 0.0606 12.83757442, 14.97015666 -1.48
BXD32 m 14.796 2.1805   5 0.97515 0.1474 11.60554219, 16.90888035 -0.54
BXD33 m 13.875 0.0   1   0.0 0.0 13.87478764, 13.87478764 -1.5
BXD34 f 16.74 0.0   1   0.0 0.0 16.74008779, 16.74008779 1.31
BXD34 m 16.301 0.0   1   0.0 0.0 16.30102689, 16.30102689 1.02
BXD39 f 14.918 1.2715   5 0.56865 0.0852 13.63995647, 16.65544365 -0.43
BXD39 m 15.972 1.8622   5 0.83282 0.1166 13.60003506, 18.08238303 0.68
BXD40 f 15.835 1.5178   5 0.6788 0.0959 13.5112744, 17.63931664 0.44
BXD40 m 15.701 1.0668   5 0.47707 0.0679 14.31495363, 17.15609707 0.4
BXD42 f 16.372 1.8218   5 0.81472 0.1113 14.48292474, 19.01538852 0.96
BXD42 m 15.804 1.3669   5 0.61128 0.0865 14.44792201, 17.85133885 0.5
BXD43 f 15.687 1.9178   5 0.85766 0.1223 13.47891223, 17.55256649 0.3
BXD43 m 15.427 1.4253   5 0.63743 0.0924 13.27426293, 16.99667622 0.11
BXD44 f 14.775 1.5918   5 0.71185 0.1077 12.29644179, 16.55490009 -0.57
BXD44 m 14.92 1.1375   5 0.50873 0.0762 13.70046273, 16.44650055 -0.41
BXD48 f 14.579 1.3107   5 0.58618 0.0899 13.16305869, 16.04345855 -0.76
BXD48 m 14.013 1.6384   5 0.73273 0.1169 12.12257515, 15.85982 -1.35
BXD49 f 14.641 2.3558   4 1.1779 0.1609 12.65779142, 17.3995276 -0.7
BXD49 m 15.186 1.162   5 0.51968 0.0765 13.41841358, 16.45161103 -0.14
BXD50 f 15.236 1.2923   5 0.57791 0.0848 13.65378409, 16.40585462 -0.13
BXD50 m 14.771 1.3398   5 0.59918 0.0907 13.45745451, 17.03116366 -0.57
BXD51 f 16.866 1.5851   5 0.70889 0.094 15.46832225, 19.18244632 1.43
BXD51 m 15.808 0.78354   5 0.35041 0.0496 15.08652007, 17.02651291 0.51
BXD6 f 14.663 1.0649   5 0.47623 0.0726 13.4623766, 15.77981959 -0.68
BXD6 m 15.096 1.5051   4 0.75257 0.0997 13.53743718, 16.7992319 -0.23
BXD61 f 16.539 1.462   5 0.65382 0.0884 14.9206768, 18.47887572 1.12
BXD61 m 16.497 0.93134   5 0.41651 0.0565 15.33415667, 17.74135989 1.22
BXD62 f 15.563 1.9641   5 0.87838 0.1262 13.41483932, 18.02609066 0.18
BXD62 m 16.619 1.8447   5 0.82497 0.111 13.51459281, 18.01433834 1.35
BXD65 f 16.196 1.1421   3 0.65938 0.0705 14.96183314, 17.21538617 0.79
BXD65 m 15.219 0.74841   5 0.3347 0.0492 14.45114517, 16.35307789 -0.1
BXD66 f 13.756 1.6055   2   1.1353 0.1167 12.62117534, 14.89176585 -1.54
BXD66 m 14.293 1.2144   2   0.85873 0.085 13.43469421, 15.15215514 -1.06
BXD68 f 14.87 0.87264   2   0.61705 0.0587 14.25275468, 15.48686039 -0.48
BXD68 m 15.556 1.0186   3 0.58808 0.0655 14.41344003, 16.36933312 0.25
BXD69 f 17.843 2.5216   4 1.2608 0.1413 14.1837517, 19.66235037 2.36
BXD69 m 17.258 0.86349   5 0.38616 0.05 16.19210826, 18.34847034 2.01
BXD70 f 15.858 1.0651   5 0.47632 0.0672 14.96733103, 17.51252584 0.47
BXD70 m 15.894 2.0571   5 0.91994 0.1294 12.69132263, 17.97858958 0.6
BXD71 m 14.248 0.0   1   0.0 0.0 14.24791619, 14.24791619 -1.11
BXD73 f 14.042 2.2005   5 0.98411 0.1567 10.55372374, 16.23065695 -1.27
BXD73 m 14.75 1.1635   5 0.52035 0.0789 13.07707905, 16.212647 -0.59
BXD75 f 16.175 1.0045   5 0.44922 0.0621 15.19109031, 17.61208952 0.77
BXD75 m 15.912 2.0629   5 0.92257 0.1296 13.46745941, 19.05890038 0.61
BXD77 f 14.871 0.81349   2   0.57522 0.0547 14.29552406, 15.44596567 -0.48
BXD77 m 14.215 0.40683   2   0.28767 0.0286 13.92744482, 14.50278461 -1.14
BXD8 f 15.801 1.722   5 0.7701 0.109 13.53947357, 17.74753103 0.41
BXD8 m 15.24 1.5854   5 0.70899 0.104 13.00550565, 17.48104387 -0.08
BXD80 f 16.722 1.0404   5 0.46526 0.0622 15.25278172, 18.15995202 1.29
BXD80 m 15.822 0.93986   5 0.42032 0.0594 14.72656019, 16.79982919 0.52
BXD81 f 14.588 1.4123   5 0.63161 0.0968 13.24175974, 16.99325079 -0.75
BXD81 m 15.473 1.3917   5 0.62237 0.0899 13.84150299, 16.9300926 0.16
BXD84 f 15.887 1.1154   5 0.49883 0.0702 14.45971579, 16.7832654 0.49
BXD84 m 15.344 0.59538   5 0.26626 0.0388 14.49134575, 15.92552729 0.03
BXD85 f 13.324 0.71624   2   0.50646 0.0538 12.81707649, 13.82999162 -1.96
BXD85 m 13.615 1.612   2   1.1399 0.1184 12.47542672, 14.75518457 -1.77
BXD86 f 15.649 1.3993   5 0.6258 0.0894 13.81199072, 17.25222321 0.27
BXD86 m 14.807 1.2391   4 0.61953 0.0837 13.25671778, 15.96932889 -0.53
BXD87 f 14.796 0.46869   5 0.20961 0.0317 14.22307719, 15.53028867 -0.55
BXD87 m 15.259 0.951   5 0.4253 0.0623 14.41189745, 16.58621389 -0.06
BXD89 f 17.121 1.1839   5 0.52945 0.0692 16.13687846, 19.10240973 1.67
BXD89 m 16.791 1.025   5 0.45838 0.061 15.61567148, 18.07413498 1.52
BXD90 f 13.159 1.2243   3 0.70683 0.093 12.00674486, 14.44438667 -2.11
BXD90 m 14.565 0.08798   3 0.0508 0.006 14.47014808, 14.64404819 -0.78
BXD92 f 13.978 0.0   1   0.0 0.0 13.97785469, 13.97785469 -1.33
BXD92 m 14.97 0.0   1   0.0 0.0 14.97033579, 14.97033579 -0.36
BXD96 f 15.318 1.2617   5 0.56427 0.0824 13.96264621, 17.09306238 -0.05
BXD96 m 16.348 1.9418   5 0.86841 0.1188 13.78408041, 18.59181585 1.07
BXD97 f 16.754 0.72923   5 0.32612 0.0435 15.86428921, 17.68254644 1.32
BXD97 m 15.975 0.14441   4 0.07221 0.009 15.79951953, 16.11897259 0.68
BXD98 f 14.258 3.01   2   2.1284 0.2111 12.12957483, 16.38636883 -1.06
BXD98 m 14.601 2.0201   4 1.0101 0.1384 12.09071501, 16.67954186 -0.74
C57BL/6J f 15.701 1.243   5 0.5559 0.0792 13.87289874, 16.97655153 0.32
C57BL/6J m 13.452 1.1187   5 0.50028 0.0832 12.04493252, 14.82491623 -1.93
DBA/2J f 15.119 1.1216   5 0.5016 0.0742 13.69757574, 16.23599986 -0.24
DBA/2J m 15.783 1.3607   5 0.60851 0.0862 14.04227405, 17.48438571 0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 14.6853 0.6234 15.9114 13.4591
BXD100 m 15.2615 0.6234 16.4876 14.0353
BXD101 f 15.5734 0.8048 17.1564 13.9904
BXD101 m 15.4136 0.697 16.7845 14.0427
BXD102 f 15.4865 0.6234 16.7126 14.2603
BXD102 m 15.4495 0.6234 16.6756 14.2233
BXD11 f 15.4703 0.6234 16.6965 14.2442
BXD11 m 15.0348 0.6234 16.2609 13.8086
BXD13 f 15.4104 0.6234 16.6366 14.1843
BXD13 m 15.7667 0.6234 16.9929 14.5406
BXD14 f 14.4859 0.6234 15.7121 13.2598
BXD14 m 15.1529 0.6234 16.3791 13.9267
BXD15 f 16.1366 0.6234 17.3627 14.9104
BXD15 m 15.7866 0.6234 17.0127 14.5604
BXD16 f 16.4954 0.6234 17.7216 15.2693
BXD16 m 16.1345 0.6234 17.3607 14.9083
BXD2 f 14.4254 0.6234 15.6516 13.1993
BXD2 m 14.3529 0.6234 15.5791 13.1268
BXD21 f 16.5685 0.6234 17.7946 15.3423
BXD21 m 16.6682 0.5691 17.7875 15.5489
BXD27 f 16.6171 0.6234 17.8432 15.3909
BXD27 m 15.9159 0.6234 17.1421 14.6898
BXD28 f 15.4351 0.6234 16.6613 14.209
BXD28 m 15.8651 0.6234 17.0912 14.6389
BXD31 f 16.3072 0.6234 17.5334 15.0811
BXD31 m 15.4433 0.697 16.8141 14.0724
BXD32 f 13.8238 0.6234 15.05 12.5977
BXD32 m 14.7956 0.6234 16.0217 13.5694
BXD39 f 14.9183 0.6234 16.1445 13.6921
BXD39 m 15.9723 0.6234 17.1985 14.7462
BXD40 f 15.8352 0.6234 17.0614 14.609
BXD40 m 15.7008 0.6234 16.927 14.4747
BXD42 f 16.3718 0.6234 17.598 15.1456
BXD42 m 15.8039 0.6234 17.0301 14.5778
BXD43 f 15.6866 0.6234 16.9127 14.4604
BXD43 m 15.4267 0.6234 16.6529 14.2005
BXD44 f 14.7754 0.6234 16.0016 13.5492
BXD44 m 14.9202 0.6234 16.1464 13.6941
BXD48 f 14.5792 0.6234 15.8053 13.353
BXD48 m 14.0127 0.6234 15.2389 12.7866
BXD49 f 14.6409 0.697 16.0118 13.2701
BXD49 m 15.1857 0.6234 16.4119 13.9596
BXD50 f 15.2357 0.6234 16.4619 14.0096
BXD50 m 14.771 0.6234 15.9971 13.5448
BXD51 f 16.8659 0.6234 18.0921 15.6398
BXD51 m 15.8075 0.6234 17.0337 14.5814
BXD6 f 14.6632 0.6234 15.8894 13.4371
BXD6 m 15.0958 0.697 16.4667 13.725
BXD61 f 16.5386 0.6234 17.7648 15.3125
BXD61 m 16.4966 0.6234 17.7227 15.2704
BXD62 f 15.5633 0.6234 16.7895 14.3372
BXD62 m 16.6191 0.6234 17.8453 15.393
BXD65 f 16.1962 0.8048 17.7791 14.6132
BXD65 m 15.2186 0.6234 16.4448 13.9924
BXD66 f 13.7565 0.9857 15.6952 11.8177
BXD66 m 14.2934 0.9857 16.2321 12.3547
BXD68 f 14.8698 0.9857 16.8085 12.9311
BXD68 m 15.5558 0.8048 17.1388 13.9729
BXD69 f 17.8426 0.697 19.2135 16.4718
BXD69 m 17.2584 0.6234 18.4846 16.0323
BXD70 f 15.8585 0.6234 17.0846 14.6323
BXD70 m 15.8938 0.6234 17.1199 14.6676
BXD73 f 14.0418 0.6234 15.2679 12.8156
BXD73 m 14.7501 0.6234 15.9762 13.5239
BXD75 f 16.1752 0.6234 17.4014 14.9491
BXD75 m 15.9116 0.6234 17.1378 14.6855
BXD77 f 14.8707 0.9857 16.8095 12.932
BXD77 m 14.2151 0.9857 16.1538 12.2764
BXD8 f 15.801 0.6234 17.0271 14.5748
BXD8 m 15.2398 0.6234 16.466 14.0137
BXD80 f 16.7217 0.6234 17.9479 15.4956
BXD80 m 15.8217 0.6234 17.0478 14.5955
BXD81 f 14.5881 0.6234 15.8143 13.362
BXD81 m 15.4725 0.6234 16.6987 14.2464
BXD84 f 15.8865 0.6234 17.1127 14.6603
BXD84 m 15.3436 0.6234 16.5697 14.1174
BXD85 f 13.3235 0.9857 15.2623 11.3848
BXD85 m 13.6153 0.9857 15.554 11.6766
BXD86 f 15.6489 0.6234 16.875 14.4227
BXD86 m 14.8069 0.697 16.1778 13.436
BXD87 f 14.7959 0.6234 16.0221 13.5698
BXD87 m 15.2587 0.6234 16.4849 14.0326
BXD89 f 17.1205 0.6234 18.3467 15.8944
BXD89 m 16.7908 0.6234 18.017 15.5647
BXD90 f 13.159 0.8048 14.742 11.5761
BXD90 m 14.5649 0.8048 16.1478 12.9819
BXD96 f 15.3176 0.6234 16.5438 14.0915
BXD96 m 16.3476 0.6234 17.5738 15.1215
BXD97 f 16.7539 0.6234 17.98 15.5277
BXD97 m 15.9747 0.697 17.3456 14.6038
BXD98 f 14.258 0.9857 16.1967 12.3192
BXD98 m 14.6015 0.697 15.9724 13.2306
C57BL/6J f 15.7014 0.6234 16.9275 14.4752
C57BL/6J m 13.452 0.6234 14.6782 12.2259
DBA/2J f 15.1194 0.6234 16.3456 13.8933
DBA/2J m 15.7825 0.6234 17.0087 14.5564


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 14.9734 0.4408 15.8404 14.1063
BXD101 both 15.4935 0.5323 16.5405 14.4465
BXD102 both 15.468 0.4408 16.335 14.601
BXD11 both 15.2525 0.4408 16.1196 14.3855
BXD13 both 15.5886 0.4408 16.4556 14.7216
BXD14 both 14.8194 0.4408 15.6864 13.9524
BXD15 both 15.9616 0.4408 16.8286 15.0945
BXD16 both 16.315 0.4408 17.182 15.4479
BXD2 both 14.3892 0.4408 15.2562 13.5222
BXD21 both 16.6183 0.422 17.4485 15.7882
BXD27 both 16.2665 0.4408 17.1335 15.3995
BXD28 both 15.6501 0.4408 16.5171 14.7831
BXD31 both 15.8752 0.4675 16.7949 14.9556
BXD32 both 14.3097 0.4408 15.1767 13.4427
BXD39 both 15.4453 0.4408 16.3123 14.5783
BXD40 both 15.768 0.4408 16.635 14.901
BXD42 both 16.0879 0.4408 16.9549 15.2208
BXD43 both 15.5566 0.4408 16.4237 14.6896
BXD44 both 14.8478 0.4408 15.7148 13.9808
BXD48 both 14.296 0.4408 15.163 13.4289
BXD49 both 14.9133 0.4675 15.8329 13.9937
BXD50 both 15.0034 0.4408 15.8704 14.1363
BXD51 both 16.3367 0.4408 17.2037 15.4697
BXD6 both 14.8795 0.4675 15.7992 13.9599
BXD61 both 16.5176 0.4408 17.3846 15.6506
BXD62 both 16.0912 0.4408 16.9582 15.2242
BXD65 both 15.7074 0.509 16.7085 14.7062
BXD66 both 14.0249 0.697 15.3958 12.6541
BXD68 both 15.2128 0.6362 16.4643 13.9614
BXD69 both 17.5505 0.4675 18.4701 16.6309
BXD70 both 15.8761 0.4408 16.7431 15.0091
BXD73 both 14.3959 0.4408 15.2629 13.5289
BXD75 both 16.0434 0.4408 16.9105 15.1764
BXD77 both 14.5429 0.697 15.9138 13.172
BXD8 both 15.5204 0.4408 16.3874 14.6534
BXD80 both 16.2717 0.4408 17.1387 15.4047
BXD81 both 15.0303 0.4408 15.8974 14.1633
BXD84 both 15.615 0.4408 16.4821 14.748
BXD85 both 13.4694 0.697 14.8403 12.0985
BXD86 both 15.2279 0.4675 16.1475 14.3082
BXD87 both 15.0273 0.4408 15.8943 14.1603
BXD89 both 16.9557 0.4408 17.8227 16.0886
BXD90 both 13.8619 0.5691 14.9813 12.7426
BXD96 both 15.8326 0.4408 16.6996 14.9656
BXD97 both 16.3643 0.4675 17.2839 15.4447
BXD98 both 14.4297 0.6036 15.6169 13.2425
C57BL/6J both 14.5767 0.4408 15.4437 13.7097
DBA/2J both 15.451 0.4408 16.318 14.5839




  GWAS USING LINEAR MIXED MODELS