Project measure / variable:   Crusio1   pyr_pct_L

ID, description, units MPD:62067   pyr_pct_L   percentage of hippocampus that is stratum pyramidale   [%]  left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum pyramidale left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means15.92   % 16.063   %
Median of the strain means15.905   % 16.086   %
SD of the strain means± 1.2616 ± 0.98796
Coefficient of variation (CV)0.0792 0.0615
Min–max range of strain means11.297   –   18.972   % 13.854   –   18.771   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0657 0.0657 0.0413 0.8392
strain 47 295.9908 6.2977 3.9554 < 0.0001
sex:strain 47 66.4679 1.4142 0.8882 0.6823
Residuals 343 546.1201 1.5922


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 11.297 0.0   1   0.0 0.0 11.29697746, 11.29697746 -3.66
BXD1 m 14.845 0.0   1   0.0 0.0 14.84504612, 14.84504612 -1.23
BXD100 f 16.38 1.0237   5 0.4578 0.0625 15.23158265, 17.77123721 0.36
BXD100 m 16.171 1.0074   5 0.45054 0.0623 14.83421524, 17.37833185 0.11
BXD101 f 15.809 0.73588   3 0.42486 0.0465 15.05993453, 16.53089769 -0.09
BXD101 m 15.959 1.6829   4 0.84145 0.1054 14.42741616, 18.24080701 -0.11
BXD102 f 16.377 1.2756   5 0.57046 0.0779 14.6294736, 17.99374749 0.36
BXD102 m 16.352 1.9821   5 0.8864 0.1212 13.63541328, 18.86447716 0.29
BXD11 f 16.349 1.6457   5 0.73599 0.1007 14.45451136, 18.94487782 0.34
BXD11 m 16.466 1.1531   5 0.51568 0.07 14.67890101, 17.84911047 0.41
BXD13 f 16.277 1.443   5 0.64533 0.0887 14.90392012, 18.4495047 0.28
BXD13 m 16.523 1.2191   5 0.54518 0.0738 15.59817445, 18.46128565 0.47
BXD14 f 14.837 0.34267   5 0.15325 0.0231 14.47401668, 15.3204575 -0.86
BXD14 m 15.691 1.2751   5 0.57025 0.0813 14.75316469, 17.89384296 -0.38
BXD15 f 15.787 1.2678   5 0.56698 0.0803 14.62523117, 17.68580091 -0.11
BXD15 m 16.51 0.64802   5 0.2898 0.0393 15.82623504, 17.14839853 0.45
BXD16 f 16.2 0.70907   5 0.3171 0.0438 15.27728292, 17.24282322 0.22
BXD16 m 15.981 0.56543   5 0.25287 0.0354 15.48146116, 16.59766868 -0.08
BXD18 f 16.413 0.0   1   0.0 0.0 16.41303244, 16.41303244 0.39
BXD18 m 17.126 0.0   1   0.0 0.0 17.12620168, 17.12620168 1.08
BXD19 f 17.455 0.0   1   0.0 0.0 17.4550315, 17.4550315 1.22
BXD19 m 15.289 0.0   1   0.0 0.0 15.28920566, 15.28920566 -0.78
BXD2 f 15.079 1.0383   5 0.46435 0.0689 13.2933498, 15.79171463 -0.67
BXD2 m 16.033 1.1695   5 0.52301 0.0729 14.31664831, 17.58845716 -0.03
BXD21 f 16.5 0.4852   5 0.21699 0.0294 15.99196005, 17.21143384 0.46
BXD21 m 16.656 1.2   6 0.48991 0.0721 15.02941038, 18.48181147 0.6
BXD27 f 17.435 0.85842   5 0.3839 0.0492 16.31009628, 18.55991671 1.2
BXD27 m 16.357 1.484   5 0.66369 0.0907 14.57103345, 18.06385683 0.3
BXD28 f 16.865 1.3656   5 0.61073 0.081 15.17189165, 18.60679214 0.75
BXD28 m 16.451 0.68719   5 0.30732 0.0418 15.64394976, 17.41119866 0.39
BXD31 f 16.565 0.77165   5 0.34509 0.0466 15.75534022, 17.52339888 0.51
BXD31 m 15.939 0.23047   4 0.11524 0.0145 15.73997365, 16.27130728 -0.13
BXD32 f 13.68 1.5862   5 0.70938 0.116 11.28916276, 15.0774737 -1.78
BXD32 m 14.931 1.1853   5 0.53007 0.0794 13.186506, 16.33553378 -1.15
BXD33 m 16.779 0.0   1   0.0 0.0 16.77894803, 16.77894803 0.72
BXD34 f 13.857 0.0   1   0.0 0.0 13.85724557, 13.85724557 -1.64
BXD34 m 18.771 0.0   1   0.0 0.0 18.77074409, 18.77074409 2.74
BXD39 f 15.861 0.49339   5 0.22065 0.0311 15.2943664, 16.33021558 -0.05
BXD39 m 16.897 1.8918   5 0.84606 0.112 14.52789702, 19.22058873 0.84
BXD40 f 16.364 1.7492   5 0.78226 0.1069 13.70344573, 17.78548567 0.35
BXD40 m 16.104 1.3725   5 0.61378 0.0852 14.3500423, 17.80577551 0.04
BXD42 f 16.355 1.5791   5 0.70618 0.0966 14.79568388, 18.65342722 0.35
BXD42 m 15.981 1.0312   5 0.46117 0.0645 14.63682704, 16.86640739 -0.08
BXD43 f 16.352 1.2008   5 0.537 0.0734 14.98890603, 17.84690571 0.34
BXD43 m 15.327 1.021   5 0.4566 0.0666 14.09931062, 16.39595535 -0.75
BXD44 f 15.515 1.4057   5 0.62865 0.0906 13.67193989, 17.34841104 -0.32
BXD44 m 15.731 1.2087   5 0.54055 0.0768 13.9554227, 16.8723296 -0.34
BXD48 f 15.516 1.0571   5 0.47274 0.0681 14.3514683, 17.03460632 -0.32
BXD48 m 15.031 1.3939   5 0.62339 0.0927 12.58504941, 15.89741474 -1.05
BXD49 f 14.904 0.91611   4 0.45805 0.0615 13.95097224, 16.13020391 -0.81
BXD49 m 15.686 1.2338   5 0.55175 0.0787 14.18186092, 17.31200614 -0.38
BXD50 f 15.574 0.93512   5 0.4182 0.06 14.49141164, 16.7659096 -0.27
BXD50 m 16.31 1.7642   5 0.78895 0.1082 14.77873163, 19.15815975 0.25
BXD51 f 16.314 1.775   5 0.79382 0.1088 13.54542677, 18.24895209 0.31
BXD51 m 16.829 1.133   5 0.50672 0.0673 15.44214279, 17.7951471 0.77
BXD6 f 15.467 1.1722   5 0.52423 0.0758 14.37049496, 17.2039749 -0.36
BXD6 m 15.635 1.5779   4 0.78895 0.1009 14.08888568, 17.50239272 -0.43
BXD61 f 17.116 0.98904   5 0.44231 0.0578 15.93238363, 18.24297694 0.95
BXD61 m 16.422 0.83874   5 0.3751 0.0511 15.80159468, 17.81216522 0.36
BXD62 f 16.457 1.0581   5 0.47319 0.0643 14.99323856, 17.51555884 0.43
BXD62 m 17.342 1.1972   5 0.53542 0.069 15.61513592, 18.63033511 1.29
BXD65 f 18.364 2.3586   3 1.3617 0.1284 16.26696339, 20.91769417 1.94
BXD65 m 15.805 1.1559   5 0.51695 0.0731 14.78234223, 17.6735681 -0.26
BXD66 f 13.899 1.0441   2   0.7383 0.0751 13.16049976, 14.63709804 -1.6
BXD66 m 16.134 0.30601   2   0.21638 0.019 15.91770252, 16.350466 0.07
BXD68 f 15.447 0.43023   2   0.30422 0.0279 15.14289518, 15.75132807 -0.37
BXD68 m 16.821 1.3388   3 0.77296 0.0796 15.34370684, 17.95377148 0.77
BXD69 f 18.972 2.629   4 1.3145 0.1386 15.09417345, 20.93671292 2.42
BXD69 m 18.454 0.91278   5 0.40821 0.0495 17.57017581, 19.71669916 2.42
BXD70 f 18.005 1.1575   5 0.51766 0.0643 16.81696754, 19.26235086 1.65
BXD70 m 16.788 1.6544   5 0.73989 0.0986 14.10916962, 18.16655092 0.73
BXD71 m 15.826 0.0   1   0.0 0.0 15.82585106, 15.82585106 -0.24
BXD73 f 15.131 1.23   5 0.55009 0.0813 13.56320631, 16.05661853 -0.63
BXD73 m 14.659 0.48771   5 0.21811 0.0333 13.84374551, 15.05157097 -1.42
BXD75 f 16.6 1.0792   5 0.48264 0.065 14.81036966, 17.55146201 0.54
BXD75 m 16.324 0.83785   5 0.3747 0.0513 15.39943577, 17.50355829 0.26
BXD77 f 15.378 0.20751   2   0.14673 0.0135 15.23152588, 15.52499397 -0.43
BXD77 m 14.247 0.15753   2   0.11139 0.0111 14.13518036, 14.35795972 -1.84
BXD8 f 16.578 1.282   5 0.57335 0.0773 14.49579858, 17.90190874 0.52
BXD8 m 17.016 2.3586   5 1.0548 0.1386 13.05129953, 19.21533127 0.96
BXD80 f 15.905 1.6665   5 0.7453 0.1048 14.05763864, 18.3073276 -0.01
BXD80 m 16.473 0.73428   5 0.32838 0.0446 15.51630059, 17.23121839 0.41
BXD81 f 15.127 1.2884   5 0.57618 0.0852 13.62470003, 16.5104774 -0.63
BXD81 m 15.192 1.1758   5 0.52581 0.0774 13.96187694, 16.96934323 -0.88
BXD84 f 16.749 1.1895   5 0.53195 0.071 15.38262024, 18.25092514 0.66
BXD84 m 16.086 1.4794   5 0.66159 0.092 15.12682737, 18.69405586 0.02
BXD85 f 14.413 0.58242   2   0.41183 0.0404 14.00108503, 14.82474694 -1.19
BXD85 m 13.966 0.87529   2   0.61892 0.0627 13.34671066, 14.58456031 -2.12
BXD86 f 15.891 0.49772   5 0.22259 0.0313 15.2400541, 16.63464192 -0.02
BXD86 m 16.112 1.2285   4 0.61426 0.0763 14.64514023, 17.56520156 0.05
BXD87 f 15.243 0.95105   5 0.42532 0.0624 13.95818794, 16.36504061 -0.54
BXD87 m 15.799 1.5789   5 0.70611 0.0999 14.0261292, 18.08027752 -0.27
BXD89 f 17.984 0.77906   5 0.34841 0.0433 16.90837005, 18.92349331 1.64
BXD89 m 18.358 0.96387   5 0.43106 0.0525 17.17660887, 19.27526151 2.32
BXD90 f 14.648 0.88983   3 0.51375 0.0607 13.73970861, 15.51811165 -1.01
BXD90 m 14.117 0.40314   3 0.23275 0.0286 13.65577727, 14.39979115 -1.97
BXD92 f 15.052 0.0   1   0.0 0.0 15.05152425, 15.05152425 -0.69
BXD92 m 13.854 0.0   1   0.0 0.0 13.85350992, 13.85350992 -2.24
BXD96 f 15.877 2.2628   5 1.0119 0.1425 14.08880751, 19.52528443 -0.03
BXD96 m 16.359 0.65606   5 0.2934 0.0401 15.47187412, 17.01276491 0.3
BXD97 f 16.696 0.76004   5 0.3399 0.0455 15.77634436, 17.47151899 0.62
BXD97 m 16.071 1.0097   4 0.50484 0.0628 15.39969754, 17.5347016 0.01
BXD98 f 14.821 2.6136   2   1.8481 0.1763 12.97288334, 16.66906754 -0.87
BXD98 m 16.084 2.0281   4 1.014 0.1261 13.09150063, 17.54226074 0.02
C57BL/6J f 16.483 0.64883   5 0.29017 0.0394 15.32737735, 16.85079056 0.45
C57BL/6J m 15.011 1.0613   5 0.47464 0.0707 13.36899018, 15.93224502 -1.07
DBA/2J f 15.524 1.5622   5 0.69865 0.1006 13.29607334, 17.3606869 -0.31
DBA/2J m 15.81 1.2871   5 0.5756 0.0814 14.75373786, 18.01156455 -0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 16.3796 0.5643 17.4895 15.2697
BXD100 m 16.1715 0.5643 17.2814 15.0615
BXD101 f 15.8094 0.7285 17.2423 14.3765
BXD101 m 15.9594 0.6309 17.2003 14.7185
BXD102 f 16.3766 0.5643 17.4866 15.2667
BXD102 m 16.3518 0.5643 17.4618 15.2419
BXD11 f 16.3492 0.5643 17.4591 15.2393
BXD11 m 16.4659 0.5643 17.5758 15.356
BXD13 f 16.2766 0.5643 17.3865 15.1667
BXD13 m 16.5227 0.5643 17.6327 15.4128
BXD14 f 14.8373 0.5643 15.9472 13.7274
BXD14 m 15.6909 0.5643 16.8008 14.5809
BXD15 f 15.787 0.5643 16.8969 14.6771
BXD15 m 16.5097 0.5643 17.6196 15.3998
BXD16 f 16.2002 0.5643 17.3101 15.0903
BXD16 m 15.9809 0.5643 17.0909 14.871
BXD2 f 15.0789 0.5643 16.1888 13.969
BXD2 m 16.0327 0.5643 17.1426 14.9228
BXD21 f 16.4997 0.5643 17.6096 15.3898
BXD21 m 16.6556 0.5151 17.6688 15.6424
BXD27 f 17.4346 0.5643 18.5445 16.3246
BXD27 m 16.3573 0.5643 17.4672 15.2473
BXD28 f 16.8649 0.5643 17.9748 15.755
BXD28 m 16.4509 0.5643 17.5608 15.341
BXD31 f 16.5654 0.5643 17.6754 15.4555
BXD31 m 15.9393 0.6309 17.1803 14.6984
BXD32 f 13.6801 0.5643 14.7901 12.5702
BXD32 m 14.9308 0.5643 16.0408 13.8209
BXD39 f 15.8605 0.5643 16.9704 14.7506
BXD39 m 16.8966 0.5643 18.0065 15.7867
BXD40 f 16.3635 0.5643 17.4734 15.2536
BXD40 m 16.1035 0.5643 17.2135 14.9936
BXD42 f 16.3547 0.5643 17.4646 15.2447
BXD42 m 15.981 0.5643 17.0909 14.871
BXD43 f 16.3519 0.5643 17.4618 15.242
BXD43 m 15.3271 0.5643 16.437 14.2171
BXD44 f 15.5154 0.5643 16.6254 14.4055
BXD44 m 15.7315 0.5643 16.8414 14.6215
BXD48 f 15.516 0.5643 16.626 14.4061
BXD48 m 15.0309 0.5643 16.1408 13.921
BXD49 f 14.9045 0.6309 16.1454 13.6635
BXD49 m 15.6856 0.5643 16.7955 14.5757
BXD50 f 15.5744 0.5643 16.6844 14.4645
BXD50 m 16.3105 0.5643 17.4204 15.2006
BXD51 f 16.314 0.5643 17.424 15.2041
BXD51 m 16.8287 0.5643 17.9386 15.7187
BXD6 f 15.4671 0.5643 16.577 14.3571
BXD6 m 15.6347 0.6309 16.8756 14.3938
BXD61 f 17.116 0.5643 18.2259 16.006
BXD61 m 16.4217 0.5643 17.5316 15.3117
BXD62 f 16.4573 0.5643 17.5672 15.3474
BXD62 m 17.3418 0.5643 18.4518 16.2319
BXD65 f 18.3645 0.7285 19.7974 16.9316
BXD65 m 15.8048 0.5643 16.9147 14.6949
BXD66 f 13.8988 0.8922 15.6538 12.1438
BXD66 m 16.1341 0.8922 17.889 14.3791
BXD68 f 15.4471 0.8922 17.2021 13.6922
BXD68 m 16.8213 0.7285 18.2542 15.3884
BXD69 f 18.9721 0.6309 20.213 17.7311
BXD69 m 18.4541 0.5643 19.564 17.3442
BXD70 f 18.0055 0.5643 19.1154 16.8955
BXD70 m 16.7876 0.5643 17.8976 15.6777
BXD73 f 15.1314 0.5643 16.2414 14.0215
BXD73 m 14.6588 0.5643 15.7687 13.5488
BXD75 f 16.5999 0.5643 17.7099 15.49
BXD75 m 16.3237 0.5643 17.4337 15.2138
BXD77 f 15.3783 0.8922 17.1332 13.6233
BXD77 m 14.2466 0.8922 16.0015 12.4916
BXD8 f 16.5782 0.5643 17.6882 15.4683
BXD8 m 17.0158 0.5643 18.1258 15.9059
BXD80 f 15.905 0.5643 17.0149 14.7951
BXD80 m 16.4728 0.5643 17.5827 15.3628
BXD81 f 15.1274 0.5643 16.2373 14.0175
BXD81 m 15.1925 0.5643 16.3024 14.0826
BXD84 f 16.7491 0.5643 17.859 15.6392
BXD84 m 16.0862 0.5643 17.1961 14.9763
BXD85 f 14.4129 0.8922 16.1679 12.658
BXD85 m 13.9656 0.8922 15.7206 12.2107
BXD86 f 15.8908 0.5643 17.0007 14.7808
BXD86 m 16.1115 0.6309 17.3525 14.8706
BXD87 f 15.2427 0.5643 16.3526 14.1328
BXD87 m 15.7987 0.5643 16.9087 14.6888
BXD89 f 17.9842 0.5643 19.0941 16.8743
BXD89 m 18.3579 0.5643 19.4678 17.248
BXD90 f 14.6483 0.7285 16.0812 13.2154
BXD90 m 14.1175 0.7285 15.5504 12.6846
BXD96 f 15.8774 0.5643 16.9874 14.7675
BXD96 m 16.3586 0.5643 17.4686 15.2487
BXD97 f 16.6955 0.5643 17.8054 15.5856
BXD97 m 16.0709 0.6309 17.3118 14.8299
BXD98 f 14.821 0.8922 16.5759 13.066
BXD98 m 16.0835 0.6309 17.3245 14.8426
C57BL/6J f 16.4829 0.5643 17.5928 15.373
C57BL/6J m 15.011 0.5643 16.1209 13.9011
DBA/2J f 15.5235 0.5643 16.6335 14.4136
DBA/2J m 15.8099 0.5643 16.9199 14.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 16.2755 0.399 17.0604 15.4907
BXD101 both 15.8844 0.4819 16.8322 14.9366
BXD102 both 16.3642 0.399 17.1491 15.5794
BXD11 both 16.4076 0.399 17.1924 15.6227
BXD13 both 16.3997 0.399 17.1845 15.6148
BXD14 both 15.2641 0.399 16.0489 14.4792
BXD15 both 16.1484 0.399 16.9332 15.3635
BXD16 both 16.0906 0.399 16.8754 15.3057
BXD2 both 15.5558 0.399 16.3406 14.771
BXD21 both 16.5776 0.382 17.3291 15.8262
BXD27 both 16.8959 0.399 17.6808 16.1111
BXD28 both 16.6579 0.399 17.4427 15.8731
BXD31 both 16.2524 0.4232 17.0848 15.4199
BXD32 both 14.3055 0.399 15.0903 13.5206
BXD39 both 16.3786 0.399 17.1634 15.5937
BXD40 both 16.2335 0.399 17.0184 15.4487
BXD42 both 16.1678 0.399 16.9527 15.383
BXD43 both 15.8395 0.399 16.6243 15.0547
BXD44 both 15.6234 0.399 16.4083 14.8386
BXD48 both 15.2735 0.399 16.0583 14.4886
BXD49 both 15.295 0.4232 16.1275 14.4626
BXD50 both 15.9425 0.399 16.7273 15.1576
BXD51 both 16.5713 0.399 17.3562 15.7865
BXD6 both 15.5509 0.4232 16.3833 14.7184
BXD61 both 16.7688 0.399 17.5537 15.984
BXD62 both 16.8996 0.399 17.6844 16.1147
BXD65 both 17.0846 0.4608 17.9909 16.1784
BXD66 both 15.0164 0.6309 16.2574 13.7755
BXD68 both 16.1342 0.5759 17.267 15.0014
BXD69 both 18.7131 0.4232 19.5455 17.8806
BXD70 both 17.3966 0.399 18.1814 16.6117
BXD73 both 14.8951 0.399 15.6799 14.1103
BXD75 both 16.4618 0.399 17.2467 15.677
BXD77 both 14.8124 0.6309 16.0534 13.5715
BXD8 both 16.797 0.399 17.5819 16.0122
BXD80 both 16.1889 0.399 16.9737 15.404
BXD81 both 15.1599 0.399 15.9448 14.3751
BXD84 both 16.4177 0.399 17.2025 15.6328
BXD85 both 14.1893 0.6309 15.4302 12.9483
BXD86 both 16.0012 0.4232 16.8336 15.1687
BXD87 both 15.5207 0.399 16.3056 14.7359
BXD89 both 18.171 0.399 18.9559 17.3862
BXD90 both 14.3829 0.5151 15.3961 13.3696
BXD96 both 16.118 0.399 16.9029 15.3332
BXD97 both 16.3832 0.4232 17.2156 15.5507
BXD98 both 15.4523 0.5464 16.5269 14.3776
C57BL/6J both 15.7469 0.399 16.5318 14.9621
DBA/2J both 15.6667 0.399 16.4516 14.8819




  GWAS USING LINEAR MIXED MODELS