Project measure / variable:   Crusio1   supra_pct_mean

ID, description, units MPD:62064   supra_pct_mean   percentage of hippocampus that is suprapyramidal mossy fibers   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is suprapyramidal mossy fibers mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means11.174   % 11.042   %
Median of the strain means11.095   % 10.84   %
SD of the strain means± 1.0176 ± 0.84838
Coefficient of variation (CV)0.0911 0.0768
Min–max range of strain means8.2744   –   13.797   % 9.4452   –   12.776   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.472 0.472 0.359 0.5495
strain 47 298.011 6.3407 4.8223 < 0.0001
sex:strain 47 43.8095 0.9321 0.7089 0.9249
Residuals 343 451.0014 1.3149


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 11.443 0.0   1   0.0 0.0 11.44276458, 11.44276458 0.26
BXD1 m 11.147 0.0   1   0.0 0.0 11.14658998, 11.14658998 0.12
BXD100 f 9.7779 0.63237   5 0.28281 0.0647 9.016080077, 10.53269964 -1.37
BXD100 m 10.278 1.0394   5 0.46484 0.1011 9.360358605, 11.94858731 -0.9
BXD101 f 10.845 1.3037   3 0.75268 0.1202 9.404245912, 11.94276742 -0.32
BXD101 m 10.938 1.0254   4 0.51268 0.0937 9.834763633, 12.11087136 -0.12
BXD102 f 10.353 1.5907   5 0.7114 0.1537 8.743818371, 12.82805327 -0.81
BXD102 m 9.6566 1.1025   5 0.49305 0.1142 8.677110058, 11.04300914 -1.63
BXD11 f 11.284 0.43239   5 0.19337 0.0383 10.81762521, 11.87494533 0.11
BXD11 m 10.642 1.9984   5 0.89372 0.1878 7.820105497, 12.2720942 -0.47
BXD13 f 12.614 0.52484   5 0.23472 0.0416 11.8955232, 13.2758058 1.42
BXD13 m 12.607 0.87171   5 0.38984 0.0691 11.72545426, 13.90062433 1.85
BXD14 f 12.655 0.76555   5 0.34236 0.0605 11.64368204, 13.68415838 1.46
BXD14 m 12.242 0.91572   5 0.40952 0.0748 10.91950363, 13.3323416 1.41
BXD15 f 12.121 1.1506   5 0.51455 0.0949 11.11646027, 13.72144914 0.93
BXD15 m 11.547 0.78907   5 0.35288 0.0683 10.7558471, 12.47095741 0.6
BXD16 f 10.581 1.2229   5 0.54691 0.1156 9.419043162, 12.20974758 -0.58
BXD16 m 10.226 0.94735   5 0.42367 0.0926 9.034435596, 11.51464871 -0.96
BXD18 f 8.2744 0.0   1   0.0 0.0 8.274397663, 8.274397663 -2.85
BXD18 m 9.4452 0.0   1   0.0 0.0 9.445239519, 9.445239519 -1.88
BXD19 f 13.797 0.0   1   0.0 0.0 13.79710613, 13.79710613 2.58
BXD19 m 12.201 0.0   1   0.0 0.0 12.20124879, 12.20124879 1.37
BXD2 f 9.7957 0.6494   5 0.29042 0.0663 9.089830255, 10.71547622 -1.35
BXD2 m 10.536 1.3757   5 0.61523 0.1306 8.859204166, 12.19902592 -0.6
BXD21 f 12.272 1.3541   5 0.60556 0.1103 10.30876958, 13.96879853 1.08
BXD21 m 11.466 0.84902   6 0.34661 0.074 10.35848432, 12.70526551 0.5
BXD27 f 9.7315 0.97805   5 0.4374 0.1005 8.62874854, 10.91718569 -1.42
BXD27 m 10.836 0.57505   5 0.25717 0.0531 10.12847516, 11.45885339 -0.24
BXD28 f 11.024 1.2316   5 0.55081 0.1117 9.027819114, 12.25636633 -0.15
BXD28 m 10.251 0.61   5 0.2728 0.0595 9.232608711, 10.88253322 -0.93
BXD31 f 11.409 1.2189   5 0.5451 0.1068 9.794133837, 12.96853007 0.23
BXD31 m 12.001 1.3143   4 0.65713 0.1095 10.15094798, 13.25957371 1.13
BXD32 f 11.558 0.38558   5 0.17244 0.0334 11.11014374, 11.9747211 0.38
BXD32 m 12.113 1.504   5 0.67261 0.1242 10.73881158, 14.54685357 1.26
BXD33 m 10.198 0.0   1   0.0 0.0 10.19754045, 10.19754045 -0.99
BXD34 f 11.069 0.0   1   0.0 0.0 11.06851039, 11.06851039 -0.1
BXD34 m 10.299 0.0   1   0.0 0.0 10.2987975, 10.2987975 -0.88
BXD39 f 11.876 0.95557   5 0.42734 0.0805 10.77486296, 13.01804503 0.69
BXD39 m 11.712 0.99522   5 0.44508 0.085 10.52577069, 13.02711296 0.79
BXD40 f 12.642 0.94167   5 0.42113 0.0745 11.59357946, 13.62259636 1.44
BXD40 m 12.776 0.84113   5 0.37617 0.0658 11.62448973, 13.60914475 2.04
BXD42 f 11.425 1.2948   5 0.57907 0.1133 10.06965005, 13.10362348 0.25
BXD42 m 11.018 0.67559   5 0.30213 0.0613 10.1826352, 12.05356327 -0.03
BXD43 f 9.855 1.2317   5 0.55083 0.125 8.298141466, 11.74519304 -1.3
BXD43 m 10.207 1.2061   5 0.53939 0.1182 8.247204211, 11.18902382 -0.98
BXD44 f 10.987 0.94578   5 0.42297 0.0861 9.743957306, 12.28815184 -0.18
BXD44 m 11.228 0.86923   5 0.38873 0.0774 10.13762598, 12.28341104 0.22
BXD48 f 10.831 0.83632   5 0.37402 0.0772 9.549913083, 11.80467189 -0.34
BXD48 m 10.299 1.1353   5 0.50771 0.1102 9.319680689, 12.14651023 -0.88
BXD49 f 11.163 1.1929   4 0.59647 0.1069 9.397963987, 11.90366724 -0.01
BXD49 m 10.779 1.5936   5 0.71267 0.1478 8.864849972, 12.18454215 -0.31
BXD50 f 10.796 0.53665   5 0.24 0.0497 10.18246834, 11.41225473 -0.37
BXD50 m 11.395 0.76286   5 0.34116 0.0669 10.27852896, 12.31891791 0.42
BXD51 f 9.6947 1.3606   5 0.60849 0.1403 8.521915199, 11.41198095 -1.45
BXD51 m 10.129 0.77977   5 0.34872 0.077 8.947137406, 10.85650721 -1.08
BXD6 f 11.551 0.53478   5 0.23916 0.0463 10.88871704, 12.25740808 0.37
BXD6 m 12.249 0.375   4 0.1875 0.0306 11.86770068, 12.75469728 1.42
BXD61 f 11.881 1.171   5 0.52368 0.0986 10.6417364, 13.41993614 0.7
BXD61 m 12.563 0.64025   5 0.28633 0.051 11.43508246, 12.97107054 1.79
BXD62 f 11.116 0.65184   5 0.29151 0.0586 10.30351486, 11.90679655 -0.06
BXD62 m 11.167 0.86892   5 0.38859 0.0778 10.39858197, 12.53529095 0.15
BXD65 f 11.019 0.98417   3 0.56821 0.0893 9.946070406, 11.8800047 -0.15
BXD65 m 10.842 1.6952   5 0.7581 0.1564 8.937353256, 13.03268559 -0.24
BXD66 f 11.035 0.81119   2   0.5736 0.0735 10.46125538, 11.60845545 -0.14
BXD66 m 10.472 0.24943   2   0.17637 0.0238 10.29605321, 10.64879775 -0.67
BXD68 f 11.581 0.99521   2   0.70372 0.0859 10.87692533, 12.28435919 0.4
BXD68 m 11.155 0.46495   3 0.26844 0.0417 10.86174404, 11.69065957 0.13
BXD69 f 10.732 1.2562   4 0.62812 0.1171 9.002818901, 12.00303742 -0.43
BXD69 m 11.093 1.5824   5 0.70765 0.1426 9.482623813, 13.06019706 0.06
BXD70 f 10.924 0.55458   5 0.24801 0.0508 10.16808154, 11.63872136 -0.25
BXD70 m 10.787 0.71704   5 0.32067 0.0665 9.824712273, 11.59953558 -0.3
BXD71 m 10.801 0.0   1   0.0 0.0 10.8005438, 10.8005438 -0.28
BXD73 f 9.413 0.35349   5 0.15809 0.0376 9.076276024, 9.82258825 -1.73
BXD73 m 10.644 0.61123   5 0.27335 0.0574 9.835813129, 11.52366077 -0.47
BXD75 f 12.161 1.4434   5 0.64551 0.1187 10.54473858, 13.62708988 0.97
BXD75 m 12.359 2.8212   5 1.2617 0.2283 9.818705825, 17.02965289 1.55
BXD77 f 11.095 2.4658   2   1.7436 0.2222 9.351901195, 12.83909141 -0.08
BXD77 m 10.658 1.9832   2   1.4024 0.1861 9.255396713, 12.06010589 -0.45
BXD8 f 12.227 1.3519   5 0.60459 0.1106 10.18106065, 13.42545637 1.04
BXD8 m 11.275 1.5613   5 0.69823 0.1385 9.090782433, 12.96763916 0.27
BXD80 f 11.026 0.94254   5 0.42152 0.0855 9.745008501, 11.84597529 -0.15
BXD80 m 9.8676 0.55323   5 0.24741 0.0561 9.309029804, 10.56045834 -1.38
BXD81 f 11.223 1.5487   5 0.69258 0.138 9.472366483, 12.98887989 0.05
BXD81 m 10.557 1.3962   5 0.62441 0.1323 8.778609047, 11.98939739 -0.57
BXD84 f 11.818 1.2986   5 0.58074 0.1099 9.646327212, 12.82925226 0.63
BXD84 m 12.201 0.77091   5 0.34476 0.0632 11.39801386, 13.28615928 1.37
BXD85 f 10.754 0.27184   2   0.19222 0.0253 10.56139987, 10.94583319 -0.41
BXD85 m 10.104 0.06409   2   0.04532 0.0063 10.05830811, 10.14894493 -1.11
BXD86 f 12.688 1.5197   5 0.67965 0.1198 11.09340156, 14.38047281 1.49
BXD86 m 12.341 0.52116   4 0.26058 0.0422 11.89092541, 13.08307305 1.53
BXD87 f 10.691 0.98312   5 0.43967 0.092 9.582007596, 12.24523363 -0.47
BXD87 m 10.84 0.89898   5 0.40204 0.0829 9.698581639, 12.12129285 -0.24
BXD89 f 10.696 1.4414   5 0.64463 0.1348 9.539602496, 13.07911803 -0.47
BXD89 m 9.6324 0.60355   5 0.26992 0.0627 8.570405282, 9.991230885 -1.66
BXD90 f 11.706 1.8323   3 1.0579 0.1565 9.677472517, 13.24121592 0.52
BXD90 m 12.225 2.091   3 1.2072 0.171 10.54184884, 14.56590677 1.39
BXD92 f 11.142 0.0   1   0.0 0.0 11.14158269, 11.14158269 -0.03
BXD92 m 10.149 0.0   1   0.0 0.0 10.14945684, 10.14945684 -1.05
BXD96 f 10.348 0.58849   5 0.26318 0.0569 9.695725612, 11.29562979 -0.81
BXD96 m 10.588 0.65396   5 0.29246 0.0618 9.813187272, 11.31194055 -0.53
BXD97 f 10.484 1.4296   5 0.63935 0.1364 8.432725778, 12.2125642 -0.68
BXD97 m 10.823 0.73872   4 0.36936 0.0683 9.833858507, 11.62329536 -0.26
BXD98 f 11.603 1.9425   2   1.3735 0.1674 10.22898155, 12.97602371 0.42
BXD98 m 11.494 2.4049   4 1.2025 0.2092 8.910188568, 14.28633761 0.53
C57BL/6J f 9.9728 1.57   5 0.70213 0.1574 8.042147016, 11.82041378 -1.18
C57BL/6J m 10.537 1.4428   5 0.64525 0.1369 8.015124283, 11.54152306 -0.59
DBA/2J f 13.438 1.2695   5 0.56772 0.0945 11.61170518, 14.77300535 2.23
DBA/2J m 11.697 0.37796   5 0.16903 0.0323 11.3156719, 12.2798787 0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 9.7779 0.5128 10.7866 8.7693
BXD100 m 10.2777 0.5128 11.2864 9.2691
BXD101 f 10.8453 0.662 12.1475 9.5431
BXD101 m 10.9382 0.5733 12.0659 9.8105
BXD102 f 10.3529 0.5128 11.3615 9.3442
BXD102 m 9.6566 0.5128 10.6653 8.648
BXD11 f 11.2838 0.5128 12.2925 10.2752
BXD11 m 10.6422 0.5128 11.6508 9.6335
BXD13 f 12.6142 0.5128 13.6229 11.6056
BXD13 m 12.6072 0.5128 13.6158 11.5985
BXD14 f 12.6545 0.5128 13.6632 11.6459
BXD14 m 12.2423 0.5128 13.251 11.2337
BXD15 f 12.1206 0.5128 13.1292 11.1119
BXD15 m 11.5472 0.5128 12.5558 10.5385
BXD16 f 10.5811 0.5128 11.5897 9.5724
BXD16 m 10.2264 0.5128 11.2351 9.2178
BXD2 f 9.7957 0.5128 10.8043 8.787
BXD2 m 10.5364 0.5128 11.5451 9.5278
BXD21 f 12.2718 0.5128 13.2804 11.2631
BXD21 m 11.4658 0.4681 12.3866 10.5451
BXD27 f 9.7315 0.5128 10.7402 8.7229
BXD27 m 10.836 0.5128 11.8446 9.8273
BXD28 f 11.0241 0.5128 12.0328 10.0155
BXD28 m 10.2513 0.5128 11.2599 9.2426
BXD31 f 11.4089 0.5128 12.4175 10.4002
BXD31 m 12.001 0.5733 13.1287 10.8733
BXD32 f 11.5575 0.5128 12.5662 10.5489
BXD32 m 12.1134 0.5128 13.1221 11.1048
BXD39 f 11.8759 0.5128 12.8845 10.8672
BXD39 m 11.7123 0.5128 12.7209 10.7036
BXD40 f 12.6422 0.5128 13.6508 11.6335
BXD40 m 12.7755 0.5128 13.7842 11.7669
BXD42 f 11.4251 0.5128 12.4338 10.4165
BXD42 m 11.0178 0.5128 12.0264 10.0091
BXD43 f 9.855 0.5128 10.8636 8.8463
BXD43 m 10.2066 0.5128 11.2152 9.1979
BXD44 f 10.9868 0.5128 11.9954 9.9781
BXD44 m 11.2278 0.5128 12.2365 10.2192
BXD48 f 10.8312 0.5128 11.8399 9.8226
BXD48 m 10.2993 0.5128 11.3079 9.2906
BXD49 f 11.1626 0.5733 12.2903 10.0349
BXD49 m 10.7789 0.5128 11.7876 9.7703
BXD50 f 10.7963 0.5128 11.8049 9.7876
BXD50 m 11.3946 0.5128 12.4033 10.386
BXD51 f 9.6947 0.5128 10.7033 8.686
BXD51 m 10.1289 0.5128 11.1376 9.1203
BXD6 f 11.5508 0.5128 12.5595 10.5422
BXD6 m 12.2487 0.5733 13.3764 11.121
BXD61 f 11.8815 0.5128 12.8901 10.8728
BXD61 m 12.5632 0.5128 13.5718 11.5545
BXD62 f 11.1158 0.5128 12.1245 10.1072
BXD62 m 11.1665 0.5128 12.1752 10.1579
BXD65 f 11.0188 0.662 12.321 9.7167
BXD65 m 10.8422 0.5128 11.8508 9.8335
BXD66 f 11.0349 0.8108 12.6297 9.44
BXD66 m 10.4724 0.8108 12.0672 8.8776
BXD68 f 11.5806 0.8108 13.1755 9.9858
BXD68 m 11.1545 0.662 12.4567 9.8524
BXD69 f 10.7324 0.5733 11.8601 9.6047
BXD69 m 11.093 0.5128 12.1017 10.0844
BXD70 f 10.9236 0.5128 11.9322 9.9149
BXD70 m 10.7874 0.5128 11.7961 9.7788
BXD73 f 9.413 0.5128 10.4216 8.4043
BXD73 m 10.6441 0.5128 11.6528 9.6355
BXD75 f 12.1608 0.5128 13.1694 11.1521
BXD75 m 12.3588 0.5128 13.3675 11.3502
BXD77 f 11.0955 0.8108 12.6903 9.5007
BXD77 m 10.6578 0.8108 12.2526 9.0629
BXD8 f 12.2269 0.5128 13.2355 11.2182
BXD8 m 11.2748 0.5128 12.2835 10.2662
BXD80 f 11.0261 0.5128 12.0347 10.0174
BXD80 m 9.8676 0.5128 10.8763 8.859
BXD81 f 11.2232 0.5128 12.2318 10.2145
BXD81 m 10.5573 0.5128 11.5659 9.5486
BXD84 f 11.8175 0.5128 12.8262 10.8089
BXD84 m 12.2013 0.5128 13.2099 11.1926
BXD85 f 10.7536 0.8108 12.3484 9.1588
BXD85 m 10.1036 0.8108 11.6984 8.5088
BXD86 f 12.6879 0.5128 13.6966 11.6793
BXD86 m 12.3408 0.5733 13.4685 11.2131
BXD87 f 10.6905 0.5128 11.6992 9.6819
BXD87 m 10.8398 0.5128 11.8485 9.8312
BXD89 f 10.6962 0.5128 11.7049 9.6876
BXD89 m 9.6324 0.5128 10.641 8.6237
BXD90 f 11.7057 0.662 13.0079 10.4036
BXD90 m 12.2253 0.662 13.5274 10.9231
BXD96 f 10.3475 0.5128 11.3562 9.3389
BXD96 m 10.5881 0.5128 11.5967 9.5794
BXD97 f 10.4838 0.5128 11.4924 9.4751
BXD97 m 10.8231 0.5733 11.9508 9.6954
BXD98 f 11.6025 0.8108 13.1973 10.0077
BXD98 m 11.4937 0.5733 12.6214 10.366
C57BL/6J f 9.9728 0.5128 10.9814 8.9641
C57BL/6J m 10.5369 0.5128 11.5455 9.5282
DBA/2J f 13.4382 0.5128 14.4469 12.4296
DBA/2J m 11.6975 0.5128 12.7061 10.6888


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 10.0278 0.3626 10.741 9.3146
BXD101 both 10.8917 0.4379 11.753 10.0304
BXD102 both 10.0047 0.3626 10.718 9.2915
BXD11 both 10.963 0.3626 11.6762 10.2498
BXD13 both 12.6107 0.3626 13.3239 11.8975
BXD14 both 12.4484 0.3626 13.1617 11.7352
BXD15 both 11.8339 0.3626 12.5471 11.1206
BXD16 both 10.4038 0.3626 11.117 9.6905
BXD2 both 10.1661 0.3626 10.8793 9.4528
BXD21 both 11.8688 0.3472 12.5516 11.1859
BXD27 both 10.2838 0.3626 10.997 9.5705
BXD28 both 10.6377 0.3626 11.3509 9.9245
BXD31 both 11.7049 0.3846 12.4614 10.9484
BXD32 both 11.8355 0.3626 12.5487 11.1223
BXD39 both 11.7941 0.3626 12.5073 11.0809
BXD40 both 12.7089 0.3626 13.4221 11.9956
BXD42 both 11.2215 0.3626 11.9347 10.5082
BXD43 both 10.0308 0.3626 10.744 9.3175
BXD44 both 11.1073 0.3626 11.8205 10.3941
BXD48 both 10.5653 0.3626 11.2785 9.852
BXD49 both 10.9708 0.3846 11.7272 10.2143
BXD50 both 11.0954 0.3626 11.8087 10.3822
BXD51 both 9.9118 0.3626 10.625 9.1986
BXD6 both 11.8998 0.3846 12.6563 11.1433
BXD61 both 12.2223 0.3626 12.9356 11.5091
BXD62 both 11.1412 0.3626 11.8544 10.428
BXD65 both 10.9305 0.4187 11.7541 10.1069
BXD66 both 10.7536 0.5733 11.8813 9.6259
BXD68 both 11.3676 0.5234 12.397 10.3381
BXD69 both 10.9127 0.3846 11.6692 10.1562
BXD70 both 10.8555 0.3626 11.5687 10.1423
BXD73 both 10.0285 0.3626 10.7418 9.3153
BXD75 both 12.2598 0.3626 12.973 11.5466
BXD77 both 10.8766 0.5733 12.0043 9.7489
BXD8 both 11.7509 0.3626 12.4641 11.0376
BXD80 both 10.4468 0.3626 11.1601 9.7336
BXD81 both 10.8902 0.3626 11.6035 10.177
BXD84 both 12.0094 0.3626 12.7226 11.2962
BXD85 both 10.4286 0.5733 11.5563 9.3009
BXD86 both 12.5143 0.3846 13.2708 11.7579
BXD87 both 10.7652 0.3626 11.4784 10.052
BXD89 both 10.1643 0.3626 10.8775 9.4511
BXD90 both 11.9655 0.4681 12.8863 11.0447
BXD96 both 10.4678 0.3626 11.181 9.7546
BXD97 both 10.6535 0.3846 11.41 9.897
BXD98 both 11.5481 0.4965 12.5247 10.5715
C57BL/6J both 10.2548 0.3626 10.968 9.5416
DBA/2J both 12.5678 0.3626 13.2811 11.8546




  GWAS USING LINEAR MIXED MODELS