Project measure / variable:   Crusio1   hilus_pct_mean

ID, description, units MPD:62059   hilus_pct_mean   percentage of hippocampus that is hilus   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is hilus mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means9.3552   % 9.5678   %
Median of the strain means9.4825   % 9.4575   %
SD of the strain means± 1.0578 ± 1.0905
Coefficient of variation (CV)0.1131 0.114
Min–max range of strain means7.3246   –   11.679   % 7.4852   –   12.76   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.5647 7.5647 5.9069 0.0156
strain 47 457.9282 9.7432 7.608 < 0.0001
sex:strain 47 48.2281 1.0261 0.8013 0.8217
Residuals 343 439.2637 1.2807


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 10.305 0.0   1   0.0 0.0 10.3046358, 10.3046358 0.9
BXD1 m 9.9409 0.0   1   0.0 0.0 9.940940823, 9.940940823 0.34
BXD100 f 7.3246 0.51422   5 0.22996 0.0702 6.677624935, 7.958914706 -1.92
BXD100 m 7.7613 1.291   5 0.57737 0.1663 6.432914612, 9.507844309 -1.66
BXD101 f 9.3543 0.7375   3 0.4258 0.0788 8.684964713, 10.14494679 0.0
BXD101 m 9.5644 1.3072   4 0.65359 0.1367 8.072620629, 11.12815065 0.0
BXD102 f 11.455 1.995   5 0.89219 0.1742 9.292346657, 14.70735051 1.99
BXD102 m 10.817 0.867   5 0.38773 0.0801 9.314187481, 11.42850371 1.15
BXD11 f 9.4763 0.39678   5 0.17744 0.0419 9.081325227, 10.07786597 0.11
BXD11 m 9.083 0.96436   5 0.43127 0.1062 7.935523041, 10.37772386 -0.44
BXD13 f 11.679 1.2739   5 0.56971 0.1091 9.812594789, 13.15160113 2.2
BXD13 m 12.083 0.92023   5 0.41154 0.0762 11.19171549, 13.45699375 2.31
BXD14 f 10.162 0.67821   5 0.30331 0.0667 9.355795473, 11.00303311 0.76
BXD14 m 9.8543 0.91217   5 0.40794 0.0926 8.545944816, 11.05189506 0.26
BXD15 f 8.1087 0.8008   5 0.35813 0.0988 7.076836293, 9.220075372 -1.18
BXD15 m 8.1026 0.41912   5 0.18743 0.0517 7.475150199, 8.487277803 -1.34
BXD16 f 9.3833 1.585   5 0.70885 0.1689 8.177154702, 11.95571815 0.03
BXD16 m 8.9179 1.1235   5 0.50244 0.126 7.436420174, 10.29657698 -0.6
BXD18 f 9.072 0.0   1   0.0 0.0 9.071968047, 9.071968047 -0.27
BXD18 m 8.7238 0.0   1   0.0 0.0 8.723821827, 8.723821827 -0.77
BXD19 f 9.1419 0.0   1   0.0 0.0 9.141917382, 9.141917382 -0.2
BXD19 m 10.398 0.0   1   0.0 0.0 10.39846424, 10.39846424 0.76
BXD2 f 8.6099 0.46813   5 0.20935 0.0544 7.974400849, 9.091948831 -0.7
BXD2 m 8.4178 0.68925   5 0.30824 0.0819 7.677015345, 9.181257702 -1.05
BXD21 f 9.8355 1.0888   5 0.48694 0.1107 8.548466846, 10.86429625 0.45
BXD21 m 9.3459 0.75469   6 0.3081 0.0808 8.671013503, 10.29657698 -0.2
BXD27 f 9.0225 1.1526   5 0.51548 0.1278 7.6655656, 10.17095595 -0.31
BXD27 m 10.217 1.2907   5 0.57724 0.1263 9.27747744, 12.42764631 0.6
BXD28 f 9.9427 1.4412   5 0.64451 0.1449 7.66879409, 11.65796499 0.56
BXD28 m 9.832 0.68631   5 0.30693 0.0698 8.824037947, 10.54113741 0.24
BXD31 f 9.5109 1.1527   5 0.51551 0.1212 8.378965406, 11.45132649 0.15
BXD31 m 11.175 1.8754   4 0.9377 0.1678 8.638257638, 13.15012548 1.47
BXD32 f 9.5964 0.85975   5 0.38449 0.0896 8.697905529, 10.56674218 0.23
BXD32 m 9.0929 0.64885   5 0.29018 0.0714 8.352780868, 9.96618279 -0.44
BXD33 m 9.4988 0.0   1   0.0 0.0 9.498799706, 9.498799706 -0.06
BXD34 f 7.3296 0.0   1   0.0 0.0 7.329643422, 7.329643422 -1.91
BXD34 m 7.4852 0.0   1   0.0 0.0 7.485190335, 7.485190335 -1.91
BXD39 f 9.8054 1.0331   5 0.462 0.1054 8.636757172, 11.00550608 0.43
BXD39 m 9.573 0.86421   5 0.38649 0.0903 8.394249534, 10.66137591 0.0
BXD40 f 10.024 0.92631   5 0.41426 0.0924 8.812129009, 10.90400214 0.63
BXD40 m 11.156 1.0688   5 0.47797 0.0958 9.792630647, 12.35341096 1.46
BXD42 f 10.578 0.64625   5 0.28901 0.0611 9.578633729, 11.19038597 1.16
BXD42 m 10.404 0.86851   5 0.38841 0.0835 9.817032246, 11.93080633 0.77
BXD43 f 7.473 1.047   5 0.46821 0.1401 6.446517909, 8.989128032 -1.78
BXD43 m 7.5969 0.68848   5 0.3079 0.0906 6.994878926, 8.538220827 -1.81
BXD44 f 9.8099 0.45849   5 0.20504 0.0467 9.30318681, 10.34936352 0.43
BXD44 m 9.4297 1.2085   5 0.54046 0.1282 8.380692898, 11.40809981 -0.13
BXD48 f 9.6339 1.2697   5 0.56783 0.1318 7.436055063, 10.62442481 0.26
BXD48 m 9.3458 1.0418   5 0.46592 0.1115 8.209923332, 10.87145415 -0.2
BXD49 f 10.497 1.6959   4 0.84793 0.1616 8.271256695, 12.38588643 1.08
BXD49 m 10.712 1.5235   5 0.68133 0.1422 8.697201828, 12.86062566 1.05
BXD50 f 8.9888 0.74861   5 0.33479 0.0833 7.847727812, 9.703387946 -0.35
BXD50 m 10.367 0.4068   5 0.18193 0.0392 9.745918373, 10.73864412 0.73
BXD51 f 8.0415 0.78526   5 0.35118 0.0977 7.138152283, 9.069610351 -1.24
BXD51 m 8.53 1.0736   5 0.48015 0.1259 7.861745994, 10.41814871 -0.95
BXD6 f 9.4825 1.0658   5 0.47665 0.1124 7.866493319, 10.6182837 0.12
BXD6 m 10.851 0.39223   4 0.19612 0.0361 10.44860209, 11.20336827 1.18
BXD61 f 11.357 0.58588   5 0.26201 0.0516 10.73140381, 12.30419664 1.89
BXD61 m 11.026 1.1957   5 0.53475 0.1084 10.10618428, 13.12005337 1.34
BXD62 f 10.611 1.914   5 0.85595 0.1804 8.307033907, 12.91130621 1.19
BXD62 m 10.652 1.5142   5 0.67718 0.1422 8.58083881, 12.25078623 0.99
BXD65 f 9.9081 0.5929   3 0.34231 0.0598 9.228528951, 10.31978082 0.52
BXD65 m 10.392 0.84733   5 0.37894 0.0815 9.392797335, 11.31766278 0.76
BXD66 f 7.6645 0.44279   2   0.3131 0.0578 7.351431327, 7.977632177 -1.6
BXD66 m 9.3398 1.1935   2   0.84393 0.1278 8.495850247, 10.18370216 -0.21
BXD68 f 9.7838 0.68626   2   0.48526 0.0701 9.298557462, 10.26906955 0.41
BXD68 m 9.4575 0.76603   3 0.44227 0.081 8.606902713, 10.09289863 -0.1
BXD69 f 9.5133 1.0851   4 0.54255 0.1141 7.907238088, 10.24184804 0.15
BXD69 m 10.361 1.0703   5 0.47865 0.1033 9.275351504, 11.79773393 0.73
BXD70 f 9.8107 1.2712   5 0.56848 0.1296 8.59036524, 11.67809083 0.43
BXD70 m 10.162 1.4221   5 0.63597 0.1399 8.672226938, 11.83465697 0.54
BXD71 m 8.1849 0.0   1   0.0 0.0 8.184921346, 8.184921346 -1.27
BXD73 f 8.178 1.5572   5 0.6964 0.1904 6.05769238, 9.419731518 -1.11
BXD73 m 9.334 1.1223   5 0.50191 0.1202 8.112522407, 10.57375979 -0.21
BXD75 f 8.691 0.77181   5 0.34517 0.0888 7.789889395, 9.758357194 -0.63
BXD75 m 8.6368 1.4828   5 0.66312 0.1717 6.810481041, 10.3553857 -0.85
BXD77 f 9.4412 1.9826   2   1.4019 0.21 8.039256283, 10.84309558 0.08
BXD77 m 8.0389 0.27015   2   0.19103 0.0336 7.847855367, 8.229906004 -1.4
BXD8 f 9.363 1.0364   5 0.46349 0.1107 7.968439292, 10.81707942 0.01
BXD8 m 9.239 1.5648   5 0.69981 0.1694 6.989446567, 11.10856137 -0.3
BXD80 f 8.9443 0.68616   5 0.30686 0.0767 8.089381158, 9.911120581 -0.39
BXD80 m 9.6405 0.51541   5 0.2305 0.0535 8.783978922, 10.04567003 0.07
BXD81 f 10.007 0.99978   5 0.44711 0.0999 8.539453505, 11.17885127 0.62
BXD81 m 9.9868 1.4999   5 0.67079 0.1502 7.594265967, 11.73559692 0.38
BXD84 f 9.4854 1.1253   5 0.50323 0.1186 7.754220966, 10.74384176 0.12
BXD84 m 9.4995 0.78037   5 0.34899 0.0821 8.760256582, 10.41847111 -0.06
BXD85 f 9.8258 1.1634   2   0.82268 0.1184 9.003106766, 10.64846959 0.44
BXD85 m 9.5101 2.2727   2   1.607 0.239 7.903014056, 11.11708715 -0.05
BXD86 f 7.5674 0.92026   5 0.41155 0.1216 6.111551544, 8.418489909 -1.69
BXD86 m 8.9462 0.46697   4 0.23349 0.0522 8.609132894, 9.635418561 -0.57
BXD87 f 8.703 0.63818   5 0.2854 0.0733 7.828692141, 9.471781023 -0.62
BXD87 m 8.7886 0.82193   5 0.36758 0.0935 7.811088783, 9.981261318 -0.71
BXD89 f 8.6066 0.37312   5 0.16686 0.0434 8.163972153, 9.125320943 -0.71
BXD89 m 8.5941 0.80459   5 0.35982 0.0936 7.368364055, 9.337888357 -0.89
BXD90 f 8.9417 2.1774   3 1.2571 0.2435 6.43870943, 10.39860566 -0.39
BXD90 m 9.1673 0.68863   3 0.39758 0.0751 8.439666099, 9.80884376 -0.37
BXD92 f 10.168 0.0   1   0.0 0.0 10.16786153, 10.16786153 0.77
BXD92 m 11.03 0.0   1   0.0 0.0 11.02991812, 11.02991812 1.34
BXD96 f 8.0016 0.9718   5 0.4346 0.1215 6.375211804, 8.937761108 -1.28
BXD96 m 8.9452 0.86692   5 0.3877 0.0969 7.519132606, 9.634571638 -0.57
BXD97 f 7.5113 1.2524   5 0.56009 0.1667 5.333379917, 8.376181518 -1.74
BXD97 m 8.4481 0.97565   4 0.48783 0.1155 7.684189166, 9.818462136 -1.03
BXD98 f 9.8824 3.0558   2   2.1607 0.3092 7.721700921, 12.04319312 0.5
BXD98 m 9.3168 1.2118   4 0.60588 0.1301 8.158449155, 10.57946486 -0.23
C57BL/6J f 11.32 1.8041   5 0.8068 0.1594 9.169907967, 13.71416472 1.86
C57BL/6J m 12.76 2.1541   5 0.96333 0.1688 9.900574431, 15.31836182 2.93
DBA/2J f 8.8979 1.7102   5 0.76481 0.1922 6.094987372, 10.27062042 -0.43
DBA/2J m 8.4973 1.5584   5 0.69695 0.1834 6.335894644, 10.14311836 -0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 7.3246 0.5061 8.32 6.3291
BXD100 m 7.7613 0.5061 8.7567 6.7658
BXD101 f 9.3543 0.6534 10.6394 8.0692
BXD101 m 9.5644 0.5658 10.6774 8.4515
BXD102 f 11.4554 0.5061 12.4508 10.46
BXD102 m 10.8174 0.5061 11.8128 9.8219
BXD11 f 9.4763 0.5061 10.4717 8.4808
BXD11 m 9.083 0.5061 10.0784 8.0875
BXD13 f 11.6795 0.5061 12.6749 10.6841
BXD13 m 12.0827 0.5061 13.0782 11.0873
BXD14 f 10.1621 0.5061 11.1575 9.1666
BXD14 m 9.8543 0.5061 10.8498 8.8589
BXD15 f 8.1087 0.5061 9.1042 7.1133
BXD15 m 8.1026 0.5061 9.098 7.1072
BXD16 f 9.3833 0.5061 10.3788 8.3879
BXD16 m 8.9179 0.5061 9.9133 7.9225
BXD2 f 8.6099 0.5061 9.6053 7.6144
BXD2 m 8.4178 0.5061 9.4133 7.4224
BXD21 f 9.8355 0.5061 10.831 8.8401
BXD21 m 9.3459 0.462 10.2546 8.4372
BXD27 f 9.0225 0.5061 10.0179 8.0271
BXD27 m 10.2173 0.5061 11.2128 9.2219
BXD28 f 9.9427 0.5061 10.9381 8.9473
BXD28 m 9.832 0.5061 10.8275 8.8366
BXD31 f 9.5109 0.5061 10.5063 8.5154
BXD31 m 11.1751 0.5658 12.2881 10.0622
BXD32 f 9.5964 0.5061 10.5919 8.601
BXD32 m 9.0929 0.5061 10.0883 8.0974
BXD39 f 9.8054 0.5061 10.8008 8.81
BXD39 m 9.573 0.5061 10.5684 8.5775
BXD40 f 10.0244 0.5061 11.0198 9.0289
BXD40 m 11.1562 0.5061 12.1517 10.1608
BXD42 f 10.5783 0.5061 11.5737 9.5829
BXD42 m 10.4038 0.5061 11.3992 9.4083
BXD43 f 7.473 0.5061 8.4685 6.4776
BXD43 m 7.5969 0.5061 8.5923 6.6015
BXD44 f 9.8099 0.5061 10.8054 8.8145
BXD44 m 9.4297 0.5061 10.4252 8.4343
BXD48 f 9.6339 0.5061 10.6294 8.6385
BXD48 m 9.3458 0.5061 10.3413 8.3504
BXD49 f 10.4971 0.5658 11.61 9.3842
BXD49 m 10.7121 0.5061 11.7076 9.7167
BXD50 f 8.9888 0.5061 9.9842 7.9934
BXD50 m 10.367 0.5061 11.3625 9.3716
BXD51 f 8.0415 0.5061 9.0369 7.046
BXD51 m 8.53 0.5061 9.5254 7.5345
BXD6 f 9.4825 0.5061 10.478 8.4871
BXD6 m 10.8509 0.5658 11.9639 9.738
BXD61 f 11.3571 0.5061 12.3525 10.3616
BXD61 m 11.0262 0.5061 12.0216 10.0307
BXD62 f 10.611 0.5061 11.6064 9.6155
BXD62 m 10.6522 0.5061 11.6477 9.6568
BXD65 f 9.9081 0.6534 11.1932 8.623
BXD65 m 10.3923 0.5061 11.3877 9.3968
BXD66 f 7.6645 0.8002 9.2385 6.0906
BXD66 m 9.3398 0.8002 10.9137 7.7659
BXD68 f 9.7838 0.8002 11.3577 8.2099
BXD68 m 9.4575 0.6534 10.7426 8.1724
BXD69 f 9.5133 0.5658 10.6263 8.4004
BXD69 m 10.3609 0.5061 11.3563 9.3654
BXD70 f 9.8107 0.5061 10.8062 8.8153
BXD70 m 10.1625 0.5061 11.1579 9.167
BXD73 f 8.178 0.5061 9.1735 7.1826
BXD73 m 9.334 0.5061 10.3294 8.3385
BXD75 f 8.691 0.5061 9.6864 7.6955
BXD75 m 8.6368 0.5061 9.6323 7.6414
BXD77 f 9.4412 0.8002 11.0151 7.8673
BXD77 m 8.0389 0.8002 9.6128 6.465
BXD8 f 9.363 0.5061 10.3584 8.3675
BXD8 m 9.239 0.5061 10.2344 8.2435
BXD80 f 8.9443 0.5061 9.9398 7.9489
BXD80 m 9.6405 0.5061 10.636 8.6451
BXD81 f 10.0071 0.5061 11.0025 9.0117
BXD81 m 9.9868 0.5061 10.9822 8.9914
BXD84 f 9.4854 0.5061 10.4808 8.49
BXD84 m 9.4995 0.5061 10.4949 8.5041
BXD85 f 9.8258 0.8002 11.3997 8.2519
BXD85 m 9.5101 0.8002 11.084 7.9361
BXD86 f 7.5674 0.5061 8.5629 6.572
BXD86 m 8.9462 0.5658 10.0591 7.8333
BXD87 f 8.703 0.5061 9.6985 7.7076
BXD87 m 8.7886 0.5061 9.784 7.7932
BXD89 f 8.6066 0.5061 9.6021 7.6112
BXD89 m 8.5941 0.5061 9.5896 7.5987
BXD90 f 8.9417 0.6534 10.2268 7.6566
BXD90 m 9.1673 0.6534 10.4524 7.8822
BXD96 f 8.0016 0.5061 8.997 7.0062
BXD96 m 8.9452 0.5061 9.9407 7.9498
BXD97 f 7.5113 0.5061 8.5068 6.5159
BXD97 m 8.4481 0.5658 9.561 7.3351
BXD98 f 9.8824 0.8002 11.4564 8.3085
BXD98 m 9.3168 0.5658 10.4297 8.2039
C57BL/6J f 11.3197 0.5061 12.3152 10.3243
C57BL/6J m 12.7599 0.5061 13.7554 11.7645
DBA/2J f 8.8979 0.5061 9.8934 7.9025
DBA/2J m 8.4973 0.5061 9.4927 7.5018


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 7.5429 0.3579 8.2468 6.839
BXD101 both 9.4594 0.4322 10.3094 8.6094
BXD102 both 11.1364 0.3579 11.8403 10.4325
BXD11 both 9.2796 0.3579 9.9835 8.5757
BXD13 both 11.8811 0.3579 12.585 11.1772
BXD14 both 10.0082 0.3579 10.7121 9.3043
BXD15 both 8.1057 0.3579 8.8096 7.4018
BXD16 both 9.1506 0.3579 9.8545 8.4467
BXD2 both 8.5139 0.3579 9.2177 7.81
BXD21 both 9.5907 0.3426 10.2646 8.9168
BXD27 both 9.6199 0.3579 10.3238 8.916
BXD28 both 9.8874 0.3579 10.5912 9.1835
BXD31 both 10.343 0.3796 11.0896 9.5964
BXD32 both 9.3447 0.3579 10.0485 8.6408
BXD39 both 9.6892 0.3579 10.3931 8.9853
BXD40 both 10.5903 0.3579 11.2942 9.8864
BXD42 both 10.491 0.3579 11.1949 9.7872
BXD43 both 7.535 0.3579 8.2388 6.8311
BXD44 both 9.6198 0.3579 10.3237 8.916
BXD48 both 9.4899 0.3579 10.1937 8.786
BXD49 both 10.6046 0.3796 11.3512 9.858
BXD50 both 9.6779 0.3579 10.3818 8.974
BXD51 both 8.2857 0.3579 8.9896 7.5818
BXD6 both 10.1667 0.3796 10.9133 9.4201
BXD61 both 11.1916 0.3579 11.8955 10.4877
BXD62 both 10.6316 0.3579 11.3355 9.9277
BXD65 both 10.1502 0.4132 10.963 9.3374
BXD66 both 8.5022 0.5658 9.6151 7.3892
BXD68 both 9.6207 0.5165 10.6366 8.6047
BXD69 both 9.9371 0.3796 10.6837 9.1905
BXD70 both 9.9866 0.3579 10.6905 9.2827
BXD73 both 8.756 0.3579 9.4599 8.0521
BXD75 both 8.6639 0.3579 9.3678 7.96
BXD77 both 8.74 0.5658 9.853 7.6271
BXD8 both 9.301 0.3579 10.0048 8.5971
BXD80 both 9.2924 0.3579 9.9963 8.5886
BXD81 both 9.997 0.3579 10.7008 9.2931
BXD84 both 9.4924 0.3579 10.1963 8.7886
BXD85 both 9.6679 0.5658 10.7809 8.555
BXD86 both 8.2568 0.3796 9.0034 7.5102
BXD87 both 8.7458 0.3579 9.4497 8.0419
BXD89 both 8.6004 0.3579 9.3043 7.8965
BXD90 both 9.0545 0.462 9.9632 8.1458
BXD96 both 8.4734 0.3579 9.1773 7.7695
BXD97 both 7.9797 0.3796 8.7263 7.2331
BXD98 both 9.5996 0.49 10.5635 8.6358
C57BL/6J both 12.0398 0.3579 12.7437 11.336
DBA/2J both 8.6976 0.3579 9.4015 7.9937




  GWAS USING LINEAR MIXED MODELS