Project measure / variable:   Crusio1   iipmf_pct_mean

ID, description, units MPD:62054   iipmf_pct_mean   percentage of hippocampus that is Intra- and infrapyramidal mossy fibers   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is Intra- and infrapyramidal mossy fibers mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means2.3544   % 2.3984   %
Median of the strain means2.2479   % 2.3535   %
SD of the strain means± 0.64219 ± 0.65094
Coefficient of variation (CV)0.2728 0.2714
Min–max range of strain means1.1692   –   3.9808   % 1.3344   –   4.2011   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2066 0.2066 0.5165 0.4728
strain 47 175.7128 3.7386 9.3465 < 0.0001
sex:strain 47 8.7854 0.1869 0.4673 0.999
Residuals 343 137.199 0.4


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 2.0303 0.0   1   0.0 0.0 2.030251411, 2.030251411 -0.5
BXD1 m 1.8151 0.0   1   0.0 0.0 1.815136066, 1.815136066 -0.9
BXD100 f 2.2479 0.41888   5 0.18733 0.1863 1.555782038, 2.559882495 -0.17
BXD100 m 2.4409 0.43254   5 0.19344 0.1772 2.031901333, 3.144957273 0.07
BXD101 f 1.9228 0.50498   3 0.29155 0.2626 1.485024782, 2.475279002 -0.67
BXD101 m 2.1388 0.8906   4 0.4453 0.4164 1.268623936, 2.978798503 -0.4
BXD102 f 2.5988 1.117   5 0.49955 0.4298 1.449438154, 4.323201981 0.38
BXD102 m 2.6746 0.59453   5 0.26588 0.2223 2.044208481, 3.543990539 0.42
BXD11 f 2.6278 0.46444   5 0.20771 0.1767 2.265041394, 3.16701549 0.43
BXD11 m 2.3778 1.0239   5 0.45789 0.4306 0.977467042, 3.521890625 -0.03
BXD13 f 2.4807 0.42421   5 0.18971 0.171 1.910524891, 3.004367869 0.2
BXD13 m 2.071 0.61871   5 0.27669 0.2987 1.531073403, 2.905995919 -0.5
BXD14 f 2.1051 0.38708   5 0.17311 0.1839 1.603332895, 2.517967241 -0.39
BXD14 m 2.0751 0.5731   5 0.2563 0.2762 1.437699755, 2.820878831 -0.5
BXD15 f 1.553 0.49732   5 0.22241 0.3202 1.111006709, 2.096794196 -1.25
BXD15 m 1.3344 0.25897   5 0.11581 0.1941 1.112437714, 1.684209957 -1.63
BXD16 f 2.2372 0.71042   5 0.31771 0.3175 1.652474087, 3.371651997 -0.18
BXD16 m 2.1294 0.55879   5 0.2499 0.2624 1.413912596, 2.790930136 -0.41
BXD18 f 1.7484 0.0   1   0.0 0.0 1.748365489, 1.748365489 -0.94
BXD18 m 2.685 0.0   1   0.0 0.0 2.684958799, 2.684958799 0.44
BXD19 f 2.8756 0.0   1   0.0 0.0 2.875583269, 2.875583269 0.81
BXD19 m 1.7306 0.0   1   0.0 0.0 1.730557184, 1.730557184 -1.03
BXD2 f 2.3661 0.44312   5 0.19817 0.1873 2.060607234, 3.135658121 0.02
BXD2 m 2.4621 0.59482   5 0.26601 0.2416 1.867219796, 3.447785415 0.1
BXD21 f 3.1201 0.23706   5 0.10602 0.076 2.896443717, 3.410697179 1.19
BXD21 m 2.5536 0.69174   6 0.2824 0.2709 1.788613017, 3.691633917 0.24
BXD27 f 1.9967 0.7196   5 0.32181 0.3604 1.02428479, 3.029895103 -0.56
BXD27 m 2.4966 0.38538   5 0.17235 0.1544 2.132901863, 3.082963385 0.15
BXD28 f 2.9424 0.90814   5 0.40613 0.3086 1.782233692, 4.238483712 0.92
BXD28 m 2.8797 0.15823   5 0.07076 0.0549 2.701014247, 3.126119542 0.74
BXD31 f 1.8955 0.58604   5 0.26209 0.3092 1.200974389, 2.650935999 -0.71
BXD31 m 2.2684 0.8766   4 0.4383 0.3864 1.343761624, 3.418906289 -0.2
BXD32 f 1.8148 0.30777   5 0.13764 0.1696 1.47878664, 2.287695896 -0.84
BXD32 m 1.678 0.45443   5 0.20323 0.2708 1.402946385, 2.486548221 -1.11
BXD33 m 3.0606 0.0   1   0.0 0.0 3.060584498, 3.060584498 1.02
BXD34 f 2.3922 0.0   1   0.0 0.0 2.392163641, 2.392163641 0.06
BXD34 m 2.1965 0.0   1   0.0 0.0 2.196502866, 2.196502866 -0.31
BXD39 f 2.834 0.45143   5 0.20189 0.1593 2.314535105, 3.407474925 0.75
BXD39 m 2.5178 0.49997   5 0.2236 0.1986 1.772659627, 2.992662334 0.18
BXD40 f 2.1492 0.378   5 0.16905 0.1759 1.630004187, 2.685898627 -0.32
BXD40 m 2.5728 0.23707   5 0.10602 0.0921 2.291093601, 2.946742751 0.27
BXD42 f 2.0242 0.56466   5 0.25252 0.279 1.316035153, 2.786960623 -0.51
BXD42 m 1.8305 0.23625   5 0.10565 0.1291 1.552821811, 2.181941936 -0.87
BXD43 f 2.2765 0.82319   5 0.36814 0.3616 1.453153924, 3.596616677 -0.12
BXD43 m 2.4034 0.6539   5 0.29243 0.2721 1.528718273, 3.30110867 0.01
BXD44 f 2.0935 0.32869   5 0.147 0.157 1.594816876, 2.404060639 -0.41
BXD44 m 2.3535 0.43322   5 0.19374 0.1841 1.879393915, 2.78024669 -0.07
BXD48 f 1.8295 0.35209   5 0.15746 0.1925 1.216583485, 2.116358721 -0.82
BXD48 m 1.6595 0.62054   5 0.27752 0.3739 1.16208304, 2.714486997 -1.14
BXD49 f 2.5922 0.94613   4 0.47307 0.365 1.434027164, 3.512020205 0.37
BXD49 m 2.5945 0.97491   5 0.43599 0.3758 1.539287429, 3.643315013 0.3
BXD50 f 2.0375 0.35439   5 0.15849 0.1739 1.601563699, 2.503856707 -0.49
BXD50 m 2.5484 0.54083   5 0.24187 0.2122 1.701349814, 3.080557498 0.23
BXD51 f 3.3593 1.1938   5 0.53388 0.3554 2.481070735, 5.155327954 1.56
BXD51 m 3.3629 0.5426   5 0.24266 0.1613 2.710164392, 4.150894061 1.48
BXD6 f 1.6509 0.32278   5 0.14435 0.1955 1.338131942, 2.189994315 -1.1
BXD6 m 1.9663 0.66114   4 0.33057 0.3362 1.427320264, 2.816879607 -0.66
BXD61 f 3.68 0.4235   5 0.18939 0.1151 3.224227868, 4.261377185 2.06
BXD61 m 3.8156 0.5625   5 0.25156 0.1474 3.097229221, 4.367649626 2.18
BXD62 f 3.7618 0.71496   5 0.31974 0.1901 2.882351919, 4.777161884 2.19
BXD62 m 4.2011 1.1249   5 0.50308 0.2678 3.065942804, 5.950159327 2.77
BXD65 f 2.7991 0.56858   3 0.32827 0.2031 2.307261405, 3.421626946 0.69
BXD65 m 2.5672 0.50394   5 0.22537 0.1963 1.977402222, 3.236748252 0.26
BXD66 f 2.2772 0.17876   2   0.1264 0.0785 2.150839781, 2.403638197 -0.12
BXD66 m 2.5778 0.55099   2   0.38961 0.2137 2.188180757, 2.967400881 0.28
BXD68 f 1.6235 0.14507   2   0.10258 0.0894 1.520916922, 1.726081584 -1.14
BXD68 m 1.8988 0.1105   3 0.0638 0.0582 1.80388585, 2.020082449 -0.77
BXD69 f 3.2411 0.80003   4 0.40001 0.2468 2.255827131, 4.134898829 1.38
BXD69 m 3.7737 0.88273   5 0.39477 0.2339 2.947396694, 4.729240764 2.11
BXD70 f 3.1228 0.47425   5 0.21209 0.1519 2.517730477, 3.79701491 1.2
BXD70 m 3.2183 0.59738   5 0.26716 0.1856 2.607233669, 4.127267216 1.26
BXD71 m 2.8292 0.0   1   0.0 0.0 2.829244272, 2.829244272 0.66
BXD73 f 1.723 0.36912   5 0.16508 0.2142 1.313513112, 2.295609994 -0.98
BXD73 m 2.167 0.633   5 0.28309 0.2921 1.349965764, 3.12138267 -0.36
BXD75 f 2.5617 0.42385   5 0.18955 0.1655 2.114039242, 3.099122625 0.32
BXD75 m 2.6426 0.64125   5 0.28678 0.2427 1.72063869, 3.513467226 0.38
BXD77 f 1.7801 0.8341   2   0.5898 0.4686 1.190261354, 2.369855283 -0.89
BXD77 m 1.4336 0.38805   2   0.2744 0.2707 1.159228656, 1.70801984 -1.48
BXD8 f 3.716 1.1014   5 0.49255 0.2964 2.132455712, 4.998672007 2.12
BXD8 m 3.1708 1.1074   5 0.49525 0.3492 1.940496021, 4.58357559 1.19
BXD80 f 2.8474 0.58374   5 0.26106 0.205 1.969968319, 3.592541795 0.77
BXD80 m 2.3078 0.30229   5 0.13519 0.131 1.845969498, 2.604710013 -0.14
BXD81 f 1.7335 0.65908   5 0.29475 0.3802 0.896085775, 2.619781757 -0.97
BXD81 m 1.6228 0.83337   5 0.3727 0.5135 0.71597355, 2.830469481 -1.19
BXD84 f 1.8072 0.56694   5 0.25354 0.3137 1.012716603, 2.614618934 -0.85
BXD84 m 1.8315 0.37246   5 0.16657 0.2034 1.309169208, 2.172118049 -0.87
BXD85 f 1.697 0.27893   2   0.19723 0.1644 1.499787413, 1.894247645 -1.02
BXD85 m 1.7737 0.12157   2   0.08596 0.0685 1.687758109, 1.859686571 -0.96
BXD86 f 1.3784 0.43706   5 0.19546 0.3171 1.050335775, 1.883275465 -1.52
BXD86 m 1.417 0.09723   4 0.04861 0.0686 1.285326919, 1.491778157 -1.51
BXD87 f 2.2597 0.55699   5 0.24909 0.2465 1.800274324, 3.208045597 -0.15
BXD87 m 2.3499 0.46776   5 0.20919 0.1991 1.746066883, 2.865623675 -0.07
BXD89 f 2.877 0.65695   5 0.2938 0.2283 2.06576181, 3.887581595 0.81
BXD89 m 2.7856 0.50946   5 0.22784 0.1829 2.223508154, 3.523848096 0.59
BXD90 f 2.6943 1.4006   3 0.80864 0.5198 1.457875382, 4.215352682 0.53
BXD90 m 2.8714 0.59552   3 0.34383 0.2074 2.325342888, 3.506387025 0.73
BXD92 f 1.1692 0.0   1   0.0 0.0 1.169157677, 1.169157677 -1.85
BXD92 m 1.3763 0.0   1   0.0 0.0 1.376304282, 1.376304282 -1.57
BXD96 f 1.9399 0.19215   5 0.08593 0.099 1.696530295, 2.176257676 -0.65
BXD96 m 2.16 0.5949   5 0.26605 0.2754 1.381913914, 2.896507477 -0.37
BXD97 f 1.9487 0.61867   5 0.27668 0.3175 0.912399838, 2.434863504 -0.63
BXD97 m 2.1883 0.51309   4 0.25655 0.2345 1.736977473, 2.881647867 -0.32
BXD98 f 2.3298 1.3439   2   0.95027 0.5768 1.379506351, 3.280039981 -0.04
BXD98 m 2.0505 0.57346   4 0.28673 0.2797 1.279304709, 2.666420859 -0.53
C57BL/6J f 3.9808 0.845   5 0.3779 0.2123 3.037232835, 4.98127469 2.53
C57BL/6J m 4.111 1.0463   5 0.4679 0.2545 2.313274877, 4.791709493 2.63
DBA/2J f 2.0317 0.60567   5 0.27086 0.2981 1.497172879, 2.748529084 -0.5
DBA/2J m 1.8944 0.48811   5 0.21829 0.2577 1.577128925, 2.745144929 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 2.2479 0.2828 2.8042 1.6916
BXD100 m 2.4409 0.2828 2.9972 1.8846
BXD101 f 1.9228 0.3651 2.641 1.2046
BXD101 m 2.1388 0.3162 2.7608 1.5169
BXD102 f 2.5988 0.2828 3.1551 2.0425
BXD102 m 2.6746 0.2828 3.2309 2.1183
BXD11 f 2.6278 0.2828 3.1841 2.0715
BXD11 m 2.3778 0.2828 2.9341 1.8215
BXD13 f 2.4807 0.2828 3.0371 1.9244
BXD13 m 2.071 0.2828 2.6273 1.5147
BXD14 f 2.1051 0.2828 2.6615 1.5488
BXD14 m 2.0751 0.2828 2.6315 1.5188
BXD15 f 1.553 0.2828 2.1093 0.9967
BXD15 m 1.3344 0.2828 1.8907 0.7781
BXD16 f 2.2372 0.2828 2.7935 1.6809
BXD16 m 2.1294 0.2828 2.6858 1.5731
BXD2 f 2.3661 0.2828 2.9224 1.8098
BXD2 m 2.4621 0.2828 3.0184 1.9058
BXD21 f 3.1201 0.2828 3.6764 2.5638
BXD21 m 2.5536 0.2582 3.0614 2.0457
BXD27 f 1.9967 0.2828 2.5531 1.4404
BXD27 m 2.4966 0.2828 3.053 1.9403
BXD28 f 2.9424 0.2828 3.4987 2.3861
BXD28 m 2.8797 0.2828 3.436 2.3234
BXD31 f 1.8955 0.2828 2.4518 1.3392
BXD31 m 2.2684 0.3162 2.8904 1.6464
BXD32 f 1.8148 0.2828 2.3711 1.2584
BXD32 m 1.678 0.2828 2.2343 1.1217
BXD39 f 2.834 0.2828 3.3903 2.2776
BXD39 m 2.5178 0.2828 3.0742 1.9615
BXD40 f 2.1492 0.2828 2.7056 1.5929
BXD40 m 2.5728 0.2828 3.1291 2.0165
BXD42 f 2.0242 0.2828 2.5805 1.4678
BXD42 m 1.8305 0.2828 2.3869 1.2742
BXD43 f 2.2765 0.2828 2.8328 1.7202
BXD43 m 2.4034 0.2828 2.9597 1.8471
BXD44 f 2.0935 0.2828 2.6498 1.5372
BXD44 m 2.3535 0.2828 2.9099 1.7972
BXD48 f 1.8295 0.2828 2.3858 1.2732
BXD48 m 1.6595 0.2828 2.2158 1.1032
BXD49 f 2.5922 0.3162 3.2142 1.9702
BXD49 m 2.5945 0.2828 3.1509 2.0382
BXD50 f 2.0375 0.2828 2.5938 1.4812
BXD50 m 2.5484 0.2828 3.1047 1.992
BXD51 f 3.3593 0.2828 3.9156 2.8029
BXD51 m 3.3629 0.2828 3.9192 2.8066
BXD6 f 1.6509 0.2828 2.2072 1.0945
BXD6 m 1.9663 0.3162 2.5883 1.3443
BXD61 f 3.68 0.2828 4.2363 3.1237
BXD61 m 3.8156 0.2828 4.3719 3.2593
BXD62 f 3.7618 0.2828 4.3181 3.2055
BXD62 m 4.2011 0.2828 4.7574 3.6448
BXD65 f 2.7991 0.3651 3.5173 2.0808
BXD65 m 2.5672 0.2828 3.1236 2.0109
BXD66 f 2.2772 0.4472 3.1569 1.3976
BXD66 m 2.5778 0.4472 3.4574 1.6982
BXD68 f 1.6235 0.4472 2.5031 0.7439
BXD68 m 1.8988 0.3651 2.617 1.1806
BXD69 f 3.2411 0.3162 3.8631 2.6191
BXD69 m 3.7737 0.2828 4.3301 3.2174
BXD70 f 3.1228 0.2828 3.6791 2.5665
BXD70 m 3.2183 0.2828 3.7746 2.6619
BXD73 f 1.723 0.2828 2.2793 1.1666
BXD73 m 2.167 0.2828 2.7233 1.6107
BXD75 f 2.5617 0.2828 3.118 2.0053
BXD75 m 2.6426 0.2828 3.1989 2.0863
BXD77 f 1.7801 0.4472 2.6597 0.9004
BXD77 m 1.4336 0.4472 2.3132 0.554
BXD8 f 3.716 0.2828 4.2723 3.1596
BXD8 m 3.1708 0.2828 3.7272 2.6145
BXD80 f 2.8474 0.2828 3.4037 2.2911
BXD80 m 2.3078 0.2828 2.8642 1.7515
BXD81 f 1.7335 0.2828 2.2898 1.1772
BXD81 m 1.6228 0.2828 2.1791 1.0665
BXD84 f 1.8072 0.2828 2.3635 1.2509
BXD84 m 1.8315 0.2828 2.3879 1.2752
BXD85 f 1.697 0.4472 2.5766 0.8174
BXD85 m 1.7737 0.4472 2.6533 0.8941
BXD86 f 1.3784 0.2828 1.9347 0.822
BXD86 m 1.417 0.3162 2.039 0.795
BXD87 f 2.2597 0.2828 2.8161 1.7034
BXD87 m 2.3499 0.2828 2.9062 1.7935
BXD89 f 2.877 0.2828 3.4333 2.3207
BXD89 m 2.7856 0.2828 3.3419 2.2292
BXD90 f 2.6943 0.3651 3.4125 1.9761
BXD90 m 2.8714 0.3651 3.5896 2.1532
BXD96 f 1.9399 0.2828 2.4962 1.3836
BXD96 m 2.16 0.2828 2.7163 1.6037
BXD97 f 1.9487 0.2828 2.505 1.3924
BXD97 m 2.1883 0.3162 2.8103 1.5664
BXD98 f 2.3298 0.4472 3.2094 1.4502
BXD98 m 2.0505 0.3162 2.6724 1.4285
C57BL/6J f 3.9808 0.2828 4.5372 3.4245
C57BL/6J m 4.111 0.2828 4.6673 3.5547
DBA/2J f 2.0317 0.2828 2.588 1.4754
DBA/2J m 1.8944 0.2828 2.4507 1.3381


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 2.3444 0.2 2.7378 1.951
BXD101 both 2.0308 0.2415 2.5059 1.5558
BXD102 both 2.6367 0.2 3.0301 2.2433
BXD11 both 2.5028 0.2 2.8962 2.1094
BXD13 both 2.2759 0.2 2.6692 1.8825
BXD14 both 2.0901 0.2 2.4835 1.6968
BXD15 both 1.4437 0.2 1.8371 1.0503
BXD16 both 2.1833 0.2 2.5767 1.79
BXD2 both 2.4141 0.2 2.8075 2.0207
BXD21 both 2.8368 0.1915 3.2135 2.4602
BXD27 both 2.2467 0.2 2.6401 1.8533
BXD28 both 2.911 0.2 3.3044 2.5177
BXD31 both 2.082 0.2121 2.4992 1.6647
BXD32 both 1.7464 0.2 2.1398 1.353
BXD39 both 2.6759 0.2 3.0693 2.2825
BXD40 both 2.361 0.2 2.7544 1.9676
BXD42 both 1.9274 0.2 2.3207 1.534
BXD43 both 2.3399 0.2 2.7333 1.9465
BXD44 both 2.2235 0.2 2.6169 1.8301
BXD48 both 1.7445 0.2 2.1379 1.3511
BXD49 both 2.5934 0.2121 3.0106 2.1761
BXD50 both 2.2929 0.2 2.6863 1.8996
BXD51 both 3.3611 0.2 3.7545 2.9677
BXD6 both 1.8086 0.2121 2.2258 1.3914
BXD61 both 3.7478 0.2 4.1412 3.3544
BXD62 both 3.9814 0.2 4.3748 3.5881
BXD65 both 2.6832 0.2309 3.1374 2.2289
BXD66 both 2.4275 0.3162 3.0495 1.8055
BXD68 both 1.7611 0.2887 2.3289 1.1933
BXD69 both 3.5074 0.2121 3.9247 3.0902
BXD70 both 3.1705 0.2 3.5639 2.7771
BXD73 both 1.945 0.2 2.3383 1.5516
BXD75 both 2.6021 0.2 2.9955 2.2087
BXD77 both 1.6068 0.3162 2.2288 0.9849
BXD8 both 3.4434 0.2 3.8368 3.05
BXD80 both 2.5776 0.2 2.971 2.1842
BXD81 both 1.6781 0.2 2.0715 1.2848
BXD84 both 1.8194 0.2 2.2128 1.426
BXD85 both 1.7354 0.3162 2.3574 1.1134
BXD86 both 1.3977 0.2121 1.8149 0.9804
BXD87 both 2.3048 0.2 2.6982 1.9114
BXD89 both 2.8313 0.2 3.2247 2.4379
BXD90 both 2.7828 0.2582 3.2907 2.275
BXD96 both 2.0499 0.2 2.4433 1.6566
BXD97 both 2.0685 0.2121 2.4858 1.6513
BXD98 both 2.1901 0.2739 2.7288 1.6515
C57BL/6J both 4.0459 0.2 4.4393 3.6525
DBA/2J both 1.9631 0.2 2.3564 1.5697




  GWAS USING LINEAR MIXED MODELS