Project measure / variable:   Crusio1   iipmf_pct_L

ID, description, units MPD:62052   iipmf_pct_L   percentage of hippocampus that is Intra- and infrapyramidal mossy fibers   [%]  left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is Intra- and infrapyramidal mossy fibers left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means2.3475   % 2.3889   %
Median of the strain means2.1833   % 2.4168   %
SD of the strain means± 0.6773 ± 0.68585
Coefficient of variation (CV)0.2885 0.2871
Min–max range of strain means1.1334   –   4.126   % 1.1387   –   4.2275   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1374 0.1374 0.2895 0.5909
strain 47 190.2323 4.0475 8.5271 < 0.0001
sex:strain 47 9.0895 0.1934 0.4074 0.9998
Residuals 343 162.8094 0.4747


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 2.034 0.0   1   0.0 0.0 2.033985226, 2.033985226 -0.46
BXD1 m 1.6083 0.0   1   0.0 0.0 1.608340504, 1.608340504 -1.14
BXD100 f 2.1295 0.65059   5 0.29095 0.3055 1.222900309, 2.73549414 -0.32
BXD100 m 2.4168 0.4239   5 0.18957 0.1754 1.89419119, 3.047760356 0.04
BXD101 f 1.8311 0.50992   3 0.2944 0.2785 1.496972528, 2.418038725 -0.76
BXD101 m 2.191 1.0909   4 0.54547 0.4979 1.155963974, 3.317520554 -0.29
BXD102 f 2.7963 1.1439   5 0.51156 0.4091 1.577316181, 4.389553837 0.66
BXD102 m 2.5403 0.90163   5 0.40322 0.3549 1.267248733, 3.778072038 0.22
BXD11 f 2.5374 0.62488   5 0.27945 0.2463 2.058670992, 3.514575606 0.28
BXD11 m 2.4036 0.99904   5 0.44679 0.4156 0.965615703, 3.33265057 0.02
BXD13 f 2.2475 0.36412   5 0.16284 0.162 1.608929654, 2.502193521 -0.15
BXD13 m 2.1613 0.61144   5 0.27344 0.2829 1.580053639, 2.999536129 -0.33
BXD14 f 2.2068 0.43577   5 0.19488 0.1975 1.74072156, 2.712251947 -0.21
BXD14 m 2.2082 0.64171   5 0.28698 0.2906 1.525475537, 3.147473253 -0.26
BXD15 f 1.5464 0.55189   5 0.24681 0.3569 0.946317522, 2.168229571 -1.18
BXD15 m 1.3117 0.16771   5 0.075 0.1279 1.133025898, 1.490046078 -1.57
BXD16 f 2.0145 0.61176   5 0.27359 0.3037 1.495748461, 3.006051711 -0.49
BXD16 m 2.0844 0.61426   5 0.27471 0.2947 1.170270752, 2.854294878 -0.44
BXD18 f 1.886 0.0   1   0.0 0.0 1.885997647, 1.885997647 -0.68
BXD18 m 2.6036 0.0   1   0.0 0.0 2.603554245, 2.603554245 0.31
BXD19 f 2.9742 0.0   1   0.0 0.0 2.974215126, 2.974215126 0.93
BXD19 m 1.8018 0.0   1   0.0 0.0 1.801756166, 1.801756166 -0.86
BXD2 f 2.3171 0.60328   5 0.26979 0.2604 1.955651145, 3.390986667 -0.04
BXD2 m 2.5812 0.67093   5 0.30005 0.2599 1.87370109, 3.694667658 0.28
BXD21 f 3.032 0.26147   5 0.11693 0.0862 2.693794908, 3.348313313 1.01
BXD21 m 2.6436 0.8818   6 0.35999 0.3336 1.555599364, 3.921978487 0.37
BXD27 f 2.1227 0.93366   5 0.41755 0.4398 0.97343655, 3.504243845 -0.33
BXD27 m 2.6458 0.32333   5 0.1446 0.1222 2.239211413, 3.003118568 0.37
BXD28 f 3.085 0.84848   5 0.37945 0.275 2.157376751, 4.35668994 1.09
BXD28 m 2.8211 0.29025   5 0.12981 0.1029 2.416496482, 3.217594545 0.63
BXD31 f 1.9622 0.76795   5 0.34344 0.3914 1.148826891, 3.175253406 -0.57
BXD31 m 2.3343 1.1275   4 0.56375 0.483 1.241083427, 3.890753805 -0.08
BXD32 f 1.7237 0.27849   5 0.12454 0.1616 1.348948837, 2.132234969 -0.92
BXD32 m 1.403 0.42294   5 0.18915 0.3015 1.094691868, 2.139445515 -1.44
BXD33 m 3.4315 0.0   1   0.0 0.0 3.431505449, 3.431505449 1.52
BXD34 f 2.1833 0.0   1   0.0 0.0 2.183340234, 2.183340234 -0.24
BXD34 m 2.2767 0.0   1   0.0 0.0 2.276662673, 2.276662673 -0.16
BXD39 f 2.7678 0.37488   5 0.16765 0.1354 2.472738645, 3.397791676 0.62
BXD39 m 2.5689 0.53203   5 0.23793 0.2071 1.840219385, 3.269370055 0.26
BXD40 f 2.2649 0.26608   5 0.11899 0.1175 1.877978938, 2.627505398 -0.12
BXD40 m 2.4662 0.28393   5 0.12698 0.1151 2.077971539, 2.839522369 0.11
BXD42 f 2.0207 0.72401   5 0.32379 0.3583 1.245637326, 3.035417532 -0.48
BXD42 m 1.8431 0.33647   5 0.15047 0.1826 1.486095073, 2.206838601 -0.8
BXD43 f 2.1785 0.83061   5 0.37146 0.3813 1.244489733, 3.459186772 -0.25
BXD43 m 2.566 0.83254   5 0.37232 0.3244 1.447009528, 3.723782366 0.26
BXD44 f 2.0332 0.3783   5 0.16918 0.1861 1.398064696, 2.399936136 -0.46
BXD44 m 2.2611 0.31869   5 0.14252 0.1409 1.904189029, 2.639170057 -0.19
BXD48 f 1.7555 0.24942   5 0.11154 0.1421 1.35086734, 1.982875827 -0.87
BXD48 m 1.6613 0.51634   5 0.23092 0.3108 1.161824383, 2.47284944 -1.06
BXD49 f 2.5518 0.83492   4 0.41746 0.3272 1.394739887, 3.198053478 0.3
BXD49 m 2.5321 1.0748   5 0.48067 0.4245 1.417244352, 3.892434335 0.21
BXD50 f 1.9789 0.47178   5 0.21099 0.2384 1.361088751, 2.456105598 -0.54
BXD50 m 2.5087 0.57509   5 0.25719 0.2292 1.568878897, 3.138515808 0.17
BXD51 f 3.2479 1.3393   5 0.59894 0.4123 2.079890895, 5.39397759 1.33
BXD51 m 3.312 0.33991   5 0.15201 0.1026 2.731696539, 3.582917479 1.35
BXD6 f 1.767 0.29677   5 0.13272 0.168 1.485770017, 2.23008816 -0.86
BXD6 m 1.9167 0.66884   4 0.33442 0.349 1.387470524, 2.793507191 -0.69
BXD61 f 3.7073 0.31945   5 0.14286 0.0862 3.390623253, 4.118555692 2.01
BXD61 m 3.729 0.52347   5 0.2341 0.1404 3.108654987, 4.300493944 1.95
BXD62 f 3.7738 0.94361   5 0.422 0.25 2.520744017, 4.879191 2.11
BXD62 m 4.2275 1.0706   5 0.4788 0.2533 3.263813247, 5.969316206 2.68
BXD65 f 2.5623 0.66941   3 0.38648 0.2613 1.789382486, 2.957593135 0.32
BXD65 m 2.5308 0.70175   5 0.31383 0.2773 1.918057399, 3.643899052 0.21
BXD66 f 2.2003 0.18802   2   0.13295 0.0855 2.067313345, 2.333210705 -0.22
BXD66 m 2.7196 0.53128   2   0.37567 0.1954 2.343902, 3.095243561 0.48
BXD68 f 1.6175 0.16212   2   0.11463 0.1002 1.502894529, 1.732164365 -1.08
BXD68 m 1.9465 0.10261   3 0.05924 0.0527 1.840189116, 2.044962892 -0.64
BXD69 f 3.4197 0.8399   4 0.41995 0.2456 2.290855712, 4.306844707 1.58
BXD69 m 3.7606 1.0502   5 0.46966 0.2793 2.643910426, 4.926080781 2.0
BXD70 f 3.1007 0.41821   5 0.18703 0.1349 2.710462024, 3.709732744 1.11
BXD70 m 3.1254 0.61372   5 0.27446 0.1964 2.506216663, 3.991166792 1.07
BXD71 m 2.9609 0.0   1   0.0 0.0 2.960851857, 2.960851857 0.83
BXD73 f 1.7342 0.46066   5 0.20601 0.2656 1.130885946, 2.422705704 -0.91
BXD73 m 2.0856 0.74223   5 0.33193 0.3559 1.196865696, 3.260395663 -0.44
BXD75 f 2.4895 0.4616   5 0.20643 0.1854 2.064329106, 3.138955501 0.21
BXD75 m 2.646 0.5405   5 0.24172 0.2043 1.80481556, 3.262590702 0.37
BXD77 f 1.803 0.92924   2   0.65707 0.5154 1.145958955, 2.460097649 -0.8
BXD77 m 1.2289 0.34638   2   0.24493 0.2819 0.983961502, 1.473816157 -1.69
BXD8 f 3.893 1.1274   5 0.5042 0.2896 2.18187052, 5.139571768 2.28
BXD8 m 3.4161 1.3321   5 0.59575 0.39 2.279420115, 5.557333177 1.5
BXD80 f 2.9582 0.68643   5 0.30698 0.232 2.041972442, 3.957875204 0.9
BXD80 m 2.4825 0.37007   5 0.1655 0.1491 1.990335423, 2.934677994 0.14
BXD81 f 1.8405 0.75054   5 0.33565 0.4078 0.848432972, 2.788731626 -0.75
BXD81 m 1.5708 0.78209   5 0.34976 0.4979 0.748546788, 2.673883368 -1.19
BXD84 f 1.7599 0.54565   5 0.24402 0.31 0.90354935, 2.321210637 -0.87
BXD84 m 1.8142 0.49286   5 0.22041 0.2717 1.220973427, 2.371114468 -0.84
BXD85 f 1.5508 0.04683   2   0.03311 0.0302 1.517688932, 1.58391855 -1.18
BXD85 m 1.6351 0.21043   2   0.1488 0.1287 1.486301876, 1.783898777 -1.1
BXD86 f 1.257 0.38434   5 0.17188 0.3058 0.769729354, 1.659579186 -1.61
BXD86 m 1.525 0.13188   4 0.06594 0.0865 1.349131904, 1.667041561 -1.26
BXD87 f 2.2029 0.72164   5 0.32273 0.3276 1.713153382, 3.466252588 -0.21
BXD87 m 2.5164 0.74369   5 0.33259 0.2955 1.602826254, 3.549353399 0.19
BXD89 f 3.2036 0.86179   5 0.3854 0.269 2.264887557, 4.538199822 1.26
BXD89 m 2.6406 0.53651   5 0.23994 0.2032 1.833211576, 3.258036595 0.37
BXD90 f 2.7519 1.2691   3 0.73271 0.4612 1.531045507, 4.064276011 0.6
BXD90 m 2.6649 0.47702   3 0.27541 0.179 2.166766467, 3.117562105 0.4
BXD92 f 1.1334 0.0   1   0.0 0.0 1.133384379, 1.133384379 -1.79
BXD92 m 1.1387 0.0   1   0.0 0.0 1.13873385, 1.13873385 -1.82
BXD96 f 1.8905 0.26507   5 0.11854 0.1402 1.596387369, 2.285979617 -0.67
BXD96 m 2.0289 0.43961   5 0.1966 0.2167 1.374209534, 2.358778235 -0.52
BXD97 f 1.9385 0.6229   5 0.27857 0.3213 0.879212141, 2.397890257 -0.6
BXD97 m 1.992 0.34009   4 0.17004 0.1707 1.709595248, 2.484318624 -0.58
BXD98 f 2.2135 1.2833   2   0.90741 0.5798 1.306038228, 3.12086758 -0.2
BXD98 m 2.0221 0.69278   4 0.34639 0.3426 1.119999266, 2.631681005 -0.53
C57BL/6J f 4.126 1.0752   5 0.48083 0.2606 2.889254118, 5.497382465 2.63
C57BL/6J m 4.093 1.1912   5 0.53272 0.291 2.406670039, 5.087048625 2.48
DBA/2J f 2.0942 0.62638   5 0.28012 0.2991 1.406598813, 2.896656502 -0.37
DBA/2J m 1.7817 0.4963   5 0.22195 0.2785 1.330923918, 2.621764937 -0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 2.1295 0.3081 2.7356 1.5235
BXD100 m 2.4168 0.3081 3.0228 1.8108
BXD101 f 1.8311 0.3978 2.6135 1.0487
BXD101 m 2.191 0.3445 2.8685 1.5134
BXD102 f 2.7963 0.3081 3.4024 2.1903
BXD102 m 2.5403 0.3081 3.1463 1.9343
BXD11 f 2.5374 0.3081 3.1435 1.9314
BXD11 m 2.4036 0.3081 3.0097 1.7976
BXD13 f 2.2475 0.3081 2.8536 1.6415
BXD13 m 2.1613 0.3081 2.7674 1.5553
BXD14 f 2.2068 0.3081 2.8129 1.6008
BXD14 m 2.2082 0.3081 2.8142 1.6022
BXD15 f 1.5464 0.3081 2.1525 0.9404
BXD15 m 1.3117 0.3081 1.9177 0.7057
BXD16 f 2.0145 0.3081 2.6205 1.4085
BXD16 m 2.0844 0.3081 2.6904 1.4784
BXD2 f 2.3171 0.3081 2.9231 1.7111
BXD2 m 2.5812 0.3081 3.1872 1.9752
BXD21 f 3.032 0.3081 3.638 2.426
BXD21 m 2.6436 0.2813 3.1968 2.0904
BXD27 f 2.1227 0.3081 2.7287 1.5167
BXD27 m 2.6458 0.3081 3.2518 2.0398
BXD28 f 3.085 0.3081 3.691 2.4789
BXD28 m 2.8211 0.3081 3.4272 2.2151
BXD31 f 1.9622 0.3081 2.5683 1.3562
BXD31 m 2.3343 0.3445 3.0119 1.6568
BXD32 f 1.7237 0.3081 2.3297 1.1177
BXD32 m 1.403 0.3081 2.009 0.797
BXD39 f 2.7678 0.3081 3.3739 2.1618
BXD39 m 2.5689 0.3081 3.175 1.9629
BXD40 f 2.2649 0.3081 2.8709 1.6588
BXD40 m 2.4662 0.3081 3.0722 1.8602
BXD42 f 2.0207 0.3081 2.6268 1.4147
BXD42 m 1.8431 0.3081 2.4492 1.2371
BXD43 f 2.1785 0.3081 2.7845 1.5724
BXD43 m 2.566 0.3081 3.172 1.96
BXD44 f 2.0332 0.3081 2.6392 1.4272
BXD44 m 2.2611 0.3081 2.8671 1.6551
BXD48 f 1.7555 0.3081 2.3615 1.1494
BXD48 m 1.6613 0.3081 2.2673 1.0553
BXD49 f 2.5518 0.3445 3.2293 1.8742
BXD49 m 2.5321 0.3081 3.1381 1.9261
BXD50 f 1.9789 0.3081 2.5849 1.3729
BXD50 m 2.5087 0.3081 3.1147 1.9026
BXD51 f 3.2479 0.3081 3.8539 2.6419
BXD51 m 3.312 0.3081 3.918 2.706
BXD6 f 1.767 0.3081 2.3731 1.161
BXD6 m 1.9167 0.3445 2.5942 1.2391
BXD61 f 3.7073 0.3081 4.3133 3.1013
BXD61 m 3.729 0.3081 4.335 3.1229
BXD62 f 3.7738 0.3081 4.3798 3.1678
BXD62 m 4.2275 0.3081 4.8336 3.6215
BXD65 f 2.5623 0.3978 3.3447 1.7799
BXD65 m 2.5308 0.3081 3.1368 1.9248
BXD66 f 2.2003 0.4872 3.1585 1.2421
BXD66 m 2.7196 0.4872 3.6778 1.7614
BXD68 f 1.6175 0.4872 2.5757 0.6593
BXD68 m 1.9465 0.3978 2.7289 1.1641
BXD69 f 3.4197 0.3445 4.0973 2.7422
BXD69 m 3.7606 0.3081 4.3666 3.1546
BXD70 f 3.1007 0.3081 3.7067 2.4947
BXD70 m 3.1254 0.3081 3.7314 2.5193
BXD73 f 1.7342 0.3081 2.3402 1.1282
BXD73 m 2.0856 0.3081 2.6917 1.4796
BXD75 f 2.4895 0.3081 3.0955 1.8835
BXD75 m 2.646 0.3081 3.252 2.04
BXD77 f 1.803 0.4872 2.7612 0.8448
BXD77 m 1.2289 0.4872 2.1871 0.2707
BXD8 f 3.893 0.3081 4.4991 3.287
BXD8 m 3.4161 0.3081 4.0221 2.8101
BXD80 f 2.9582 0.3081 3.5642 2.3521
BXD80 m 2.4825 0.3081 3.0885 1.8765
BXD81 f 1.8405 0.3081 2.4465 1.2345
BXD81 m 1.5708 0.3081 2.1768 0.9648
BXD84 f 1.7599 0.3081 2.3659 1.1539
BXD84 m 1.8142 0.3081 2.4202 1.2082
BXD85 f 1.5508 0.4872 2.509 0.5926
BXD85 m 1.6351 0.4872 2.5933 0.6769
BXD86 f 1.257 0.3081 1.863 0.651
BXD86 m 1.525 0.3445 2.2025 0.8474
BXD87 f 2.2029 0.3081 2.809 1.5969
BXD87 m 2.5164 0.3081 3.1224 1.9103
BXD89 f 3.2036 0.3081 3.8096 2.5976
BXD89 m 2.6406 0.3081 3.2466 2.0346
BXD90 f 2.7519 0.3978 3.5343 1.9695
BXD90 m 2.6649 0.3978 3.4472 1.8825
BXD96 f 1.8905 0.3081 2.4965 1.2845
BXD96 m 2.0289 0.3081 2.635 1.4229
BXD97 f 1.9385 0.3081 2.5445 1.3324
BXD97 m 1.992 0.3445 2.6696 1.3145
BXD98 f 2.2135 0.4872 3.1717 1.2552
BXD98 m 2.0221 0.3445 2.6996 1.3445
C57BL/6J f 4.126 0.3081 4.7321 3.52
C57BL/6J m 4.093 0.3081 4.6991 3.487
DBA/2J f 2.0942 0.3081 2.7003 1.4882
DBA/2J m 1.7817 0.3081 2.3878 1.1757


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 2.2732 0.2179 2.7017 1.8447
BXD101 both 2.011 0.2631 2.5285 1.4935
BXD102 both 2.6683 0.2179 3.0968 2.2398
BXD11 both 2.4705 0.2179 2.8991 2.042
BXD13 both 2.2044 0.2179 2.633 1.7759
BXD14 both 2.2075 0.2179 2.636 1.779
BXD15 both 1.4291 0.2179 1.8576 1.0005
BXD16 both 2.0495 0.2179 2.478 1.6209
BXD2 both 2.4492 0.2179 2.8777 2.0206
BXD21 both 2.8378 0.2086 3.2481 2.4275
BXD27 both 2.3842 0.2179 2.8128 1.9557
BXD28 both 2.9531 0.2179 3.3816 2.5245
BXD31 both 2.1483 0.2311 2.6028 1.6938
BXD32 both 1.5633 0.2179 1.9919 1.1348
BXD39 both 2.6684 0.2179 3.0969 2.2399
BXD40 both 2.3655 0.2179 2.794 1.937
BXD42 both 1.9319 0.2179 2.3605 1.5034
BXD43 both 2.3722 0.2179 2.8008 1.9437
BXD44 both 2.1472 0.2179 2.5757 1.7186
BXD48 both 1.7084 0.2179 2.1369 1.2799
BXD49 both 2.5419 0.2311 2.9965 2.0874
BXD50 both 2.2438 0.2179 2.6723 1.8152
BXD51 both 3.2799 0.2179 3.7085 2.8514
BXD6 both 1.8419 0.2311 2.2964 1.3873
BXD61 both 3.7181 0.2179 4.1467 3.2896
BXD62 both 4.0007 0.2179 4.4292 3.5722
BXD65 both 2.5465 0.2516 3.0414 2.0517
BXD66 both 2.4599 0.3445 3.1375 1.7824
BXD68 both 1.782 0.3145 2.4005 1.1635
BXD69 both 3.5902 0.2311 4.0447 3.1356
BXD70 both 3.113 0.2179 3.5415 2.6845
BXD73 both 1.9099 0.2179 2.3384 1.4814
BXD75 both 2.5677 0.2179 2.9963 2.1392
BXD77 both 1.516 0.3445 2.1935 0.8384
BXD8 both 3.6546 0.2179 4.0831 3.2261
BXD80 both 2.7203 0.2179 3.1488 2.2918
BXD81 both 1.7057 0.2179 2.1342 1.2771
BXD84 both 1.787 0.2179 2.2156 1.3585
BXD85 both 1.593 0.3445 2.2705 0.9154
BXD86 both 1.391 0.2311 1.8455 0.9365
BXD87 both 2.3597 0.2179 2.7882 1.9311
BXD89 both 2.9221 0.2179 3.3506 2.4936
BXD90 both 2.7084 0.2813 3.2616 2.1552
BXD96 both 1.9597 0.2179 2.3883 1.5312
BXD97 both 1.9652 0.2311 2.4198 1.5107
BXD98 both 2.1178 0.2983 2.7046 1.531
C57BL/6J both 4.1095 0.2179 4.5381 3.681
DBA/2J both 1.938 0.2179 2.3665 1.5095




  GWAS USING LINEAR MIXED MODELS