Project measure / variable:   Peters1   HCT

ID, description, units MPD:6204   HCT   hematocrit (HCT)   [%]  
Data set, strains Peters1   inbred w/CC7   43 strains     sex: both     age: 10wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters1 - hematocrit (HCT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains43 strains
Mean of the strain means42.3   % 42.1   %
Median of the strain means42.8   % 42.0   %
SD of the strain means± 2.29 ± 2.63
Coefficient of variation (CV)0.0543 0.0625
Min–max range of strain means36.9   –   45.8   % 37.0   –   50.0   %
Mean sample size per strain11.8   mice 11.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.5102 2.5102 0.2458 0.6202
strain 42 5058.5438 120.4415 11.7936 < 0.0001
sex:strain 42 1150.2257 27.3863 2.6817 < 0.0001
Residuals 922 9415.9059 10.2125


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 41.6 2.01   14 0.538 0.0484 36.3, 44.0 -0.29
129S1/SvImJ m 46.8 1.78   15 0.46 0.038 42.7, 49.5 1.78
A/J f 44.3 2.44   10 0.77 0.055 39.9, 47.8 0.89
A/J m 39.7 3.42   10 1.08 0.0862 31.5, 44.4 -0.92
AKR/J f 43.2 3.1   10 0.982 0.0718 36.3, 45.5 0.41
AKR/J m 42.2 2.24   9 0.745 0.053 39.0, 45.6 0.03
BALB/cByJ f 39.3 1.5   15 0.388 0.0382 36.9, 42.1 -1.29
BALB/cByJ m 40.3 1.98   29 0.367 0.0491 35.5, 45.3 -0.69
BALB/cJ f 44.5 2.27   11 0.685 0.0511 41.1, 49.0 0.98
BALB/cJ m 38.7 2.54   5 1.14 0.0658 34.7, 41.3 -1.3
BTBR T+ Itpr3tf/J f 37.9 1.68   10 0.532 0.0445 34.6, 40.7 -1.9
BTBR T+ Itpr3tf/J m 40.4 3.28   10 1.04 0.0812 34.8, 45.8 -0.65
BUB/BnJ f 44.4 1.36   14 0.364 0.0307 42.5, 47.1 0.93
BUB/BnJ m 43.9 2.02   10 0.64 0.0461 40.4, 47.0 0.68
C3H/HeJ f 44.8 2.79   10 0.882 0.0623 38.5, 47.9 1.11
C3H/HeJ m 43.7 3.62   10 1.15 0.0829 34.6, 47.0 0.6
C57BL/10J f 43.1 3.32   21 0.724 0.0769 37.6, 49.5 0.37
C57BL/10J m 43.2 3.53   15 0.911 0.0817 36.6, 49.9 0.41
C57BL/6J f 43.4 2.67   11 0.806 0.0616 38.5, 48.8 0.5
C57BL/6J m 46.0 3.7   11 1.11 0.0804 40.5, 54.3 1.48
C57BLKS/J f 42.9 2.85   10 0.903 0.0665 38.1, 46.6 0.28
C57BLKS/J m 41.1 3.86   10 1.22 0.094 35.9, 46.4 -0.39
C57BR/cdJ f 45.8 2.52   10 0.798 0.0551 41.3, 49.7 1.54
C57BR/cdJ m 47.1 3.48   12 1.0 0.0738 40.3, 52.0 1.89
C57L/J f 45.8 2.17   12 0.625 0.0473 41.6, 49.5 1.54
C57L/J m 50.0 4.07   15 1.05 0.0814 43.8, 57.1 3.0
C58/J f 41.0 4.16   11 1.25 0.101 31.2, 45.5 -0.55
C58/J m 42.6 2.82   9 0.94 0.0662 40.7, 49.8 0.18
CAST/EiJ f 40.9 0.708   12 0.204 0.0173 39.8, 42.1 -0.59
CAST/EiJ m 39.3 3.01   11 0.908 0.0767 35.6, 44.3 -1.07
CBA/J f 42.7 1.29   9 0.431 0.0303 41.0, 44.6 0.19
CBA/J m 41.8 1.72   10 0.543 0.0411 40.3, 46.1 -0.12
CE/J f 42.9 4.06   13 1.13 0.0947 35.2, 46.5 0.28
CE/J m 46.0 3.32   8 1.17 0.0721 40.0, 50.7 1.48
CZECHII/EiJ f 43.2 2.89   11 0.871 0.067 36.0, 46.2 0.41
CZECHII/EiJ m 42.0 2.68   11 0.809 0.0639 36.5, 45.8 -0.05
DBA/1J f 44.4 2.41   14 0.644 0.0542 39.7, 47.0 0.93
DBA/1J m 42.0 1.55   11 0.468 0.0369 39.0, 43.6 -0.05
DBA/2J f 41.0 4.22   13 1.17 0.103 32.3, 47.6 -0.55
DBA/2J m 40.3 3.9   10 1.23 0.0969 34.0, 48.3 -0.69
FVB/NJ f 41.1 2.52   12 0.728 0.0614 37.0, 45.5 -0.51
FVB/NJ m 38.4 4.55   12 1.31 0.118 25.1, 42.3 -1.41
I/LnJ f 42.5 3.62   13 1.0 0.0853 37.8, 49.5 0.1
I/LnJ m 42.0 3.64   13 1.01 0.0866 35.2, 46.2 -0.05
JF1/MsJ f 38.1 2.27   11 0.684 0.0595 34.7, 41.0 -1.81
JF1/MsJ m 39.4 3.76   16 0.94 0.0953 32.1, 44.0 -1.03
KK/HlJ f 41.4 2.09   14 0.559 0.0506 37.2, 44.1 -0.38
KK/HlJ m 42.5 4.68   11 1.41 0.11 34.8, 51.2 0.14
LP/J f 44.2 5.62   15 1.45 0.127 33.6, 50.0 0.85
LP/J m 43.8 2.12   10 0.67 0.0484 40.4, 47.5 0.64
MA/MyJ f 40.3 4.67   12 1.35 0.116 29.0, 46.8 -0.85
MA/MyJ m 40.5 2.93   13 0.812 0.0724 34.4, 45.5 -0.62
MOLF/EiJ f 37.6 3.81   13 1.06 0.101 29.1, 42.4 -2.03
MOLF/EiJ m 37.3 3.52   15 0.908 0.0942 30.2, 44.4 -1.83
MSM/MsJ f 38.4 2.99   11 0.902 0.0779 32.5, 42.0 -1.68
MSM/MsJ m 37.0 5.18   11 1.56 0.14 27.4, 47.2 -1.95
NOD/ShiLtJ f 44.5 1.36   10 0.43 0.0305 42.6, 46.2 0.98
NOD/ShiLtJ m 42.7 2.78   10 0.879 0.065 36.2, 45.8 0.22
NON/ShiLtJ f 45.7 2.38   10 0.752 0.0521 42.4, 49.9 1.5
NON/ShiLtJ m 42.9 2.42   10 0.766 0.0565 38.3, 46.7 0.3
NZB/BlNJ f 36.9 4.35   12 1.26 0.118 26.0, 45.5 -2.34
NZB/BlNJ m 41.6 3.31   9 1.1 0.0795 36.4, 47.6 -0.2
NZW/LacJ f 42.8 2.62   12 0.757 0.0614 38.3, 46.2 0.24
NZW/LacJ m 40.7 2.4   10 0.76 0.0591 35.9, 44.4 -0.54
PERA/EiJ f 41.5 2.51   11 0.756 0.0604 37.9, 45.6 -0.33
PERA/EiJ m 41.0 4.4   8 1.55 0.107 36.1, 48.6 -0.43
PL/J f 43.5 3.32   16 0.829 0.0762 37.6, 48.3 0.54
PL/J m 43.4 4.24   10 1.34 0.0977 38.0, 52.0 0.49
PWK/PhJ f 43.2 1.55   13 0.431 0.0359 39.8, 45.3 0.41
PWK/PhJ m 43.6 1.82   12 0.527 0.0419 40.0, 46.0 0.56
RF/J f 44.8 2.91   10 0.921 0.065 39.8, 50.5 1.11
RF/J m 44.4 3.6   16 0.9 0.081 36.0, 49.9 0.87
RIIIS/J f 44.0 3.51   11 1.06 0.0797 36.4, 48.6 0.76
RIIIS/J m 43.1 3.85   16 0.962 0.0893 33.9, 50.5 0.37
SEA/GnJ f 42.0 3.55   10 1.12 0.0846 35.4, 47.1 -0.11
SEA/GnJ m 39.3 5.92   9 1.97 0.15 28.7, 47.2 -1.07
SJL/J f 40.2 2.44   8 0.861 0.0607 37.4, 44.9 -0.9
SJL/J m 39.8 4.43   14 1.18 0.111 32.1, 49.7 -0.88
SM/J f 42.5 1.75   11 0.529 0.0412 39.9, 45.4 0.1
SM/J m 42.4 1.75   10 0.554 0.0413 39.4, 44.3 0.11
SPRET/EiJ f 41.4 2.53   11 0.763 0.0611 38.1, 46.3 -0.38
SPRET/EiJ m 44.1 3.28   11 0.99 0.0746 38.1, 49.4 0.75
SWR/J f 43.4 4.08   13 1.13 0.0941 35.7, 47.0 0.5
SWR/J m 42.5 4.67   11 1.41 0.11 37.4, 48.9 0.14
WSB/EiJ f 40.1 1.63   11 0.492 0.0407 37.8, 43.3 -0.94
WSB/EiJ m 41.6 2.21   9 0.738 0.0533 37.8, 44.4 -0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 41.5857 0.8541 43.2619 39.9095
129S1/SvImJ m 46.8333 0.8251 48.4527 45.214
A/J f 44.3 1.0106 46.2833 42.3167
A/J m 39.69 1.0106 41.6733 37.7067
AKR/J f 43.22 1.0106 45.2033 41.2367
AKR/J m 42.1889 1.0652 44.2795 40.0983
BALB/cByJ f 39.3267 0.8251 40.946 37.7073
BALB/cByJ m 40.3448 0.5934 41.5095 39.1802
BALB/cJ f 44.4727 0.9635 46.3637 42.5817
BALB/cJ m 38.66 1.4292 41.4648 35.8552
BTBR T+ Itpr3tf/J f 37.86 1.0106 39.8433 35.8767
BTBR T+ Itpr3tf/J m 40.37 1.0106 42.3533 38.3867
BUB/BnJ f 44.3929 0.8541 46.069 42.7167
BUB/BnJ m 43.94 1.0106 45.9233 41.9567
C3H/HeJ f 44.81 1.0106 46.7933 42.8267
C3H/HeJ m 43.69 1.0106 45.6733 41.7067
C57BL/10J f 43.1429 0.6974 44.5115 41.7743
C57BL/10J m 43.1667 0.8251 44.786 41.5473
C57BL/6J f 43.3727 0.9635 45.2637 41.4817
C57BL/6J m 45.9636 0.9635 47.8546 44.0727
C57BLKS/J f 42.94 1.0106 44.9233 40.9567
C57BLKS/J m 41.1 1.0106 43.0833 39.1167
C57BR/cdJ f 45.84 1.0106 47.8233 43.8567
C57BR/cdJ m 47.1083 0.9225 48.9188 45.2979
C57L/J f 45.7833 0.9225 47.5938 43.9729
C57L/J m 50.0267 0.8251 51.646 48.4073
C58/J f 40.9909 0.9635 42.8819 39.0999
C58/J m 42.6111 1.0652 44.7017 40.5205
CAST/EiJ f 40.9417 0.9225 42.7521 39.1312
CAST/EiJ m 39.2636 0.9635 41.1546 37.3727
CBA/J f 42.6556 1.0652 44.7461 40.565
CBA/J m 41.79 1.0106 43.7733 39.8067
CE/J f 42.8846 0.8863 44.6241 41.1452
CE/J m 46.0375 1.1298 48.2549 43.8201
CZECHII/EiJ f 43.1636 0.9635 45.0546 41.2727
CZECHII/EiJ m 41.9818 0.9635 43.8728 40.0908
DBA/1J f 44.4286 0.8541 46.1047 42.7524
DBA/1J m 42.0 0.9635 43.891 40.109
DBA/2J f 41.0308 0.8863 42.7702 39.2913
DBA/2J m 40.29 1.0106 42.2733 38.3067
FVB/NJ f 41.075 0.9225 42.8855 39.2645
FVB/NJ m 38.4417 0.9225 40.2521 36.6312
I/LnJ f 42.4615 0.8863 44.201 40.7221
I/LnJ m 41.9923 0.8863 43.7318 40.2529
JF1/MsJ f 38.1091 0.9635 40.0001 36.2181
JF1/MsJ m 39.45 0.7989 41.0179 37.8821
KK/HlJ f 41.3571 0.8541 43.0333 39.681
KK/HlJ m 42.5091 0.9635 44.4001 40.6181
LP/J f 44.1667 0.8251 45.786 42.5473
LP/J m 43.78 1.0106 45.7633 41.7967
MA/MyJ f 40.2667 0.9225 42.0771 38.4562
MA/MyJ m 40.4538 0.8863 42.1933 38.7144
MOLF/EiJ f 37.6308 0.8863 39.3702 35.8913
MOLF/EiJ m 37.32 0.8251 38.9393 35.7007
MSM/MsJ f 38.3727 0.9635 40.2637 36.4817
MSM/MsJ m 36.9909 0.9635 38.8819 35.0999
NOD/ShiLtJ f 44.54 1.0106 46.5233 42.5567
NOD/ShiLtJ m 42.75 1.0106 44.7333 40.7667
NON/ShiLtJ f 45.66 1.0106 47.6433 43.6767
NON/ShiLtJ m 42.89 1.0106 44.8733 40.9067
NZB/BlNJ f 36.875 0.9225 38.6855 35.0645
NZB/BlNJ m 41.6111 1.0652 43.7017 39.5205
NZW/LacJ f 42.7667 0.9225 44.5771 40.9562
NZW/LacJ m 40.68 1.0106 42.6633 38.6967
PERA/EiJ f 41.4909 0.9635 43.3819 39.5999
PERA/EiJ m 41.0375 1.1298 43.2549 38.8201
PL/J f 43.5375 0.7989 45.1054 41.9696
PL/J m 43.37 1.0106 45.3533 41.3867
PWK/PhJ f 43.2385 0.8863 44.9779 41.499
PWK/PhJ m 43.5667 0.9225 45.3771 41.7562
RF/J f 44.79 1.0106 46.7733 42.8067
RF/J m 44.4187 0.7989 45.9867 42.8508
RIIIS/J f 44.0182 0.9635 45.9092 42.1272
RIIIS/J m 43.1187 0.7989 44.6867 41.5508
SEA/GnJ f 41.95 1.0106 43.9333 39.9667
SEA/GnJ m 39.3444 1.0652 41.435 37.2539
SJL/J f 40.1625 1.1298 42.3799 37.9451
SJL/J m 39.8143 0.8541 41.4905 38.1381
SM/J f 42.5364 0.9635 44.4273 40.6454
SM/J m 42.41 1.0106 44.3933 40.4267
SPRET/EiJ f 41.4 0.9635 43.291 39.509
SPRET/EiJ m 44.0545 0.9635 45.9455 42.1636
SWR/J f 43.3615 0.8863 45.101 41.6221
SWR/J m 42.5182 0.9635 44.4092 40.6272
WSB/EiJ f 40.1364 0.9635 42.0273 38.2454
WSB/EiJ m 41.5556 1.0652 43.6461 39.465


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 44.2095 0.5938 45.3748 43.0442
A/J both 41.995 0.7146 43.3974 40.5926
AKR/J both 42.7044 0.7342 44.1453 41.2636
BALB/cByJ both 39.8357 0.5082 40.8331 38.8384
BALB/cJ both 41.5664 0.8618 43.2577 39.875
BTBR T+ Itpr3tf/J both 39.115 0.7146 40.5174 37.7126
BUB/BnJ both 44.1664 0.6616 45.4648 42.8681
C3H/HeJ both 44.25 0.7146 45.6524 42.8476
C57BL/10J both 43.1548 0.5402 44.2149 42.0947
C57BL/6J both 44.6682 0.6813 46.0053 43.3311
C57BLKS/J both 42.02 0.7146 43.4224 40.6176
C57BR/cdJ both 46.4742 0.6842 47.8169 45.1315
C57L/J both 47.905 0.6188 49.1195 46.6905
C58/J both 41.801 0.7182 43.2105 40.3916
CAST/EiJ both 40.1027 0.667 41.4116 38.7937
CBA/J both 42.2228 0.7342 43.6636 40.782
CE/J both 44.4611 0.718 45.8702 43.0519
CZECHII/EiJ both 42.5727 0.6813 43.9099 41.2356
DBA/1J both 43.2143 0.6438 44.4778 41.9508
DBA/2J both 40.6604 0.6721 41.9794 39.3414
FVB/NJ both 39.7583 0.6523 41.0385 38.4781
I/LnJ both 42.2269 0.6267 43.4569 40.9969
JF1/MsJ both 38.7795 0.6258 40.0078 37.5513
KK/HlJ both 41.9331 0.6438 43.1966 40.6697
LP/J both 43.9733 0.6523 45.2535 42.6931
MA/MyJ both 40.3603 0.6397 41.6156 39.1049
MOLF/EiJ both 37.4754 0.6055 38.6637 36.2871
MSM/MsJ both 37.6818 0.6813 39.0189 36.3447
NOD/ShiLtJ both 43.645 0.7146 45.0474 42.2426
NON/ShiLtJ both 44.275 0.7146 45.6774 42.8726
NZB/BlNJ both 39.2431 0.7046 40.6258 37.8603
NZW/LacJ both 41.7233 0.6842 43.066 40.3806
PERA/EiJ both 41.2642 0.7425 42.7213 39.8071
PL/J both 43.4537 0.6441 44.7178 42.1897
PWK/PhJ both 43.4026 0.6397 44.6579 42.1472
RF/J both 44.6044 0.6441 45.8685 43.3403
RIIIS/J both 43.5685 0.6258 44.7967 42.3402
SEA/GnJ both 40.6472 0.7342 42.088 39.2064
SJL/J both 39.9884 0.7082 41.3782 38.5986
SM/J both 42.4732 0.6982 43.8433 41.103
SPRET/EiJ both 42.7273 0.6813 44.0644 41.3901
SWR/J both 42.9399 0.6546 44.2245 41.6552
WSB/EiJ both 40.846 0.7182 42.2554 39.4365




  GWAS USING LINEAR MIXED MODELS