Phenotype measure:   Crusio1   periphery_time

ID, description, units MPD:62005   periphery_time   percentage of total time spent in thigmotaxis zone, 20 min test   [%]
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 10-12wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
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Crusio1 - percentage of total time spent in thigmotaxis zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested54 strains55 strains
Mean of the strain means67.59   % 66.15   %
Median of the strain means67.8   % 65.5   %
SD of the strain means± 9.4733 ± 7.6727
Coefficient of variation (CV)0.1401 0.116
Min–max range of strain means38.25   –   86.9   % 50.0   –   84.2   %
Mean sample size per strain8.4   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 760.6972 760.6972 7.1589 0.0076
strain 52 55300.9424 1063.4797 10.0083 < 0.0001
sex:strain 52 6960.9059 133.8636 1.2598 0.1078
Residuals 804 85432.5369 106.2594


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 61.0 7.0711   2   5.0 0.1159 56.0, 66.0 -0.7
BXD1 m 68.0 2.8284   2   2.0 0.0416 66.0, 70.0 0.24
BXD100 f 76.9 6.8386   10 2.1626 0.0889 67.0, 87.0 0.98
BXD100 m 68.0 9.4634   10 2.9926 0.1392 51.0, 80.0 0.24
BXD101 f 76.83 8.1588   6 3.3308 0.1062 62.0, 83.0 0.97
BXD101 m 68.62 6.9269   8 2.449 0.1009 61.0, 80.0 0.32
BXD102 f 67.5 3.6286   10 1.1475 0.0538 63.0, 73.0 -0.01
BXD102 m 70.0 4.5461   10 1.4376 0.0649 63.0, 77.0 0.5
BXD11 f 75.7 10.698   10 3.3831 0.1413 62.0, 89.0 0.86
BXD11 m 77.5 8.7591   10 2.7699 0.113 65.0, 95.0 1.48
BXD13 f 71.4 13.426   10 4.2458 0.188 44.0, 93.0 0.4
BXD13 m 72.9 5.7629   10 1.8224 0.0791 65.0, 81.0 0.88
BXD14 f 53.2 11.193   10 3.5396 0.2104 37.0, 76.0 -1.52
BXD14 m 53.0 10.646   10 3.3665 0.2009 43.0, 79.0 -1.71
BXD15 f 75.3 13.466   10 4.2585 0.1788 48.0, 91.0 0.81
BXD15 m 76.7 7.5285   10 2.3807 0.0982 68.0, 90.0 1.38
BXD16 f 58.7 7.4095   10 2.3431 0.1262 50.0, 72.0 -0.94
BXD16 m 65.5 12.946   10 4.094 0.1977 48.0, 84.0 -0.08
BXD18 f 68.0 4.2426   2   3.0 0.0624 65.0, 71.0 0.04
BXD18 m 66.0 8.4853   2   6.0 0.1286 60.0, 72.0 -0.02
BXD19 f 68.0 4.2426   2   3.0 0.0624 65.0, 71.0 0.04
BXD19 m 61.0 9.8995   2   7.0 0.1623 54.0, 68.0 -0.67
BXD2 f 71.2 10.25   10 3.2414 0.144 57.0, 87.0 0.38
BXD2 m 64.4 12.411   10 3.9248 0.1927 42.0, 81.0 -0.23
BXD21 f 67.1 8.8751   10 2.8065 0.1323 53.0, 79.0 -0.05
BXD21 m 56.3 8.2064   10 2.5951 0.1458 44.0, 70.0 -1.28
BXD27 f 74.2 14.831   10 4.6899 0.1999 42.0, 91.0 0.7
BXD27 m 75.6 16.926   10 5.3525 0.2239 44.0, 100.0 1.23
BXD28 f 71.2 9.3666   10 2.962 0.1316 51.0, 83.0 0.38
BXD28 m 69.4 13.492   10 4.2667 0.1944 53.0, 91.0 0.42
BXD31 f 73.9 11.357   10 3.5915 0.1537 56.0, 90.0 0.67
BXD31 m 60.4 13.318   10 4.2116 0.2205 32.0, 85.0 -0.75
BXD32 f 71.1 12.324   10 3.8971 0.1733 46.0, 86.0 0.37
BXD32 m 69.2 9.016   10 2.8511 0.1303 49.0, 83.0 0.4
BXD33 f 48.0 0.0   1   0.0 0.0 48.0, 48.0 -2.07
BXD33 m 50.0 0.0   1   0.0 0.0 50.0, 50.0 -2.1
BXD34 f 62.5 3.5355   2   2.5 0.0566 60.0, 65.0 -0.54
BXD34 m 58.5 3.5355   2   2.5 0.0604 56.0, 61.0 -1.0
BXD39 f 75.1 9.769   10 3.0892 0.1301 60.0, 92.0 0.79
BXD39 m 81.6 7.4714   10 2.3627 0.0916 69.0, 90.0 2.01
BXD40 f 53.1 19.273   10 6.0945 0.3629 23.0, 74.0 -1.53
BXD40 m 57.5 7.9896   10 2.5265 0.1389 47.0, 70.0 -1.13
BXD42 f 67.3 8.6545   10 2.7368 0.1286 57.0, 85.0 -0.03
BXD42 m 63.9 8.0201   10 2.5362 0.1255 46.0, 74.0 -0.29
BXD43 f 70.9 8.4123   10 2.6602 0.1187 58.0, 90.0 0.35
BXD43 m 63.7 5.8128   10 1.8382 0.0913 53.0, 70.0 -0.32
BXD44 f 78.4 7.5895   10 2.4 0.0968 66.0, 90.0 1.14
BXD44 m 69.7 7.7753   10 2.4588 0.1116 56.0, 84.0 0.46
BXD48 f 58.3 9.0437   10 2.8599 0.1551 48.0, 74.0 -0.98
BXD48 m 59.4 5.7581   10 1.8209 0.0969 51.0, 70.0 -0.88
BXD49 f 68.6 11.365   10 3.5938 0.1657 45.0, 86.0 0.11
BXD49 m 64.3 7.1655   10 2.2659 0.1114 51.0, 73.0 -0.24
BXD50 f 71.0 4.1633   10 1.3166 0.0586 65.0, 78.0 0.36
BXD50 m 72.8 8.7407   10 2.7641 0.1201 63.0, 95.0 0.87
BXD51 f 86.1 6.0818   10 1.9232 0.0706 73.0, 92.0 1.95
BXD51 m 84.2 5.5136   10 1.7436 0.0655 74.0, 92.0 2.35
BXD6 f 77.6 9.0701   10 2.8682 0.1169 66.0, 94.0 1.06
BXD6 m 74.8 6.941   10 2.1949 0.0928 66.0, 87.0 1.13
BXD61 f 76.8 5.2873   10 1.672 0.0688 67.0, 82.0 0.97
BXD61 m 73.3 6.961   10 2.2013 0.095 61.0, 81.0 0.93
BXD62 f 62.0 19.414   10 6.1391 0.3131 19.0, 86.0 -0.59
BXD62 m 57.9 22.985   10 7.2686 0.397 2.0, 83.0 -1.08
BXD65 f 62.5 8.5732   6 3.5 0.1372 53.0, 75.0 -0.54
BXD65 m 63.1 6.3325   10 2.0025 0.1004 54.0, 73.0 -0.4
BXD66 f 60.25 6.8496   4 3.4248 0.1137 54.0, 70.0 -0.78
BXD66 m 66.5 13.675   4 6.8374 0.2056 55.0, 82.0 0.05
BXD68 f 63.0 9.5568   4 4.7784 0.1517 50.0, 73.0 -0.49
BXD68 m 70.67 8.4301   6 3.4416 0.1193 58.0, 80.0 0.59
BXD69 f 59.4 6.1137   10 1.9333 0.1029 51.0, 69.0 -0.87
BXD69 m 58.4 13.81   10 4.367 0.2365 25.0, 75.0 -1.01
BXD70 f 61.7 12.807   10 4.0498 0.2076 33.0, 78.0 -0.62
BXD70 m 58.9 8.6468   10 2.7343 0.1468 40.0, 69.0 -0.94
BXD71 m 65.0 1.4142   2   1.0 0.0218 64.0, 66.0 -0.15
BXD73 f 83.9 7.6804   10 2.4288 0.0915 73.0, 93.0 1.72
BXD73 m 77.5 8.2765   10 2.6173 0.1068 64.0, 86.0 1.48
BXD75 f 56.9 19.198   10 6.0708 0.3374 18.0, 81.0 -1.13
BXD75 m 58.1 8.3593   10 2.6434 0.1439 43.0, 71.0 -1.05
BXD77 f 38.25 9.4296   4 4.7148 0.2465 27.0, 47.0 -3.1
BXD77 m 58.5 13.478   4 6.7392 0.2304 45.0, 77.0 -1.0
BXD8 f 58.5 14.144   10 4.4728 0.2418 37.0, 77.0 -0.96
BXD8 m 66.8 6.6131   10 2.0913 0.099 57.0, 79.0 0.08
BXD80 f 79.9 6.9674   10 2.2033 0.0872 61.0, 85.0 1.3
BXD80 m 80.9 6.9354   10 2.1932 0.0857 67.0, 90.0 1.92
BXD81 f 61.0 8.641   10 2.7325 0.1417 50.0, 75.0 -0.7
BXD81 m 58.6 10.469   10 3.3106 0.1787 37.0, 75.0 -0.98
BXD84 f 62.4 15.436   10 4.8813 0.2474 39.0, 85.0 -0.55
BXD84 m 66.7 8.87   10 2.805 0.133 54.0, 83.0 0.07
BXD85 f 62.75 5.7373   4 2.8687 0.0914 56.0, 68.0 -0.51
BXD85 m 57.75 12.685   4 6.3426 0.2197 42.0, 73.0 -1.09
BXD86 f 61.9 7.5196   10 2.3779 0.1215 50.0, 72.0 -0.6
BXD86 m 60.5 10.179   10 3.2189 0.1682 48.0, 78.0 -0.74
BXD87 f 83.1 10.29   10 3.2539 0.1238 57.0, 94.0 1.64
BXD87 m 74.2 10.196   10 3.2242 0.1374 56.0, 90.0 1.05
BXD89 f 64.9 9.024   10 2.8537 0.139 45.0, 76.0 -0.28
BXD89 m 60.6 13.599   10 4.3004 0.2244 37.0, 75.0 -0.72
BXD90 f 72.17 4.9565   6 2.0235 0.0687 68.0, 81.0 0.48
BXD90 m 71.67 8.3825   6 3.4222 0.117 62.0, 85.0 0.72
BXD92 f 61.5 2.1213   2   1.5 0.0345 60.0, 63.0 -0.64
BXD92 m 56.67 9.2916   3 5.3645 0.164 46.0, 63.0 -1.24
BXD96 f 67.6 4.0879   10 1.2927 0.0605 62.0, 77.0 0.0
BXD96 m 60.9 10.365   10 3.2777 0.1702 43.0, 74.0 -0.68
BXD97 f 63.5 12.886   10 4.075 0.2029 35.0, 81.0 -0.43
BXD97 m 67.7 11.046   10 3.493 0.1632 50.0, 89.0 0.2
BXD98 f 73.17 10.226   6 4.1747 0.1398 56.0, 86.0 0.59
BXD98 m 62.71 8.5579   7 3.2346 0.1365 50.0, 72.0 -0.45
C57BL/6J f 68.0 7.1024   10 2.246 0.1044 54.0, 77.0 0.04
C57BL/6J m 64.6 11.587   10 3.6642 0.1794 44.0, 80.0 -0.2
DBA/2J f 86.9 8.9125   10 2.8184 0.1026 63.0, 94.0 2.04
DBA/2J m 77.1 11.14   10 3.5228 0.1445 58.0, 89.0 1.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 f 61.0 7.289 75.3077 46.6923
BXD1 m 68.0 7.289 82.3077 53.6923
BXD100 f 76.9 3.2597 83.2986 70.5014
BXD100 m 68.0 3.2597 74.3986 61.6014
BXD101 f 76.8333 4.2083 85.0939 68.5728
BXD101 m 68.625 3.6445 75.7789 61.4711
BXD102 f 67.5 3.2597 73.8986 61.1014
BXD102 m 70.0 3.2597 76.3986 63.6014
BXD11 f 75.7 3.2597 82.0986 69.3014
BXD11 m 77.5 3.2597 83.8986 71.1014
BXD13 f 71.4 3.2597 77.7986 65.0014
BXD13 m 72.9 3.2597 79.2986 66.5014
BXD14 f 53.2 3.2597 59.5986 46.8014
BXD14 m 53.0 3.2597 59.3986 46.6014
BXD15 f 75.3 3.2597 81.6986 68.9014
BXD15 m 76.7 3.2597 83.0986 70.3014
BXD16 f 58.7 3.2597 65.0986 52.3014
BXD16 m 65.5 3.2597 71.8986 59.1014
BXD18 f 68.0 7.289 82.3077 53.6923
BXD18 m 66.0 7.289 80.3077 51.6923
BXD19 f 68.0 7.289 82.3077 53.6923
BXD19 m 61.0 7.289 75.3077 46.6923
BXD2 f 71.2 3.2597 77.5986 64.8014
BXD2 m 64.4 3.2597 70.7986 58.0014
BXD21 f 67.1 3.2597 73.4986 60.7014
BXD21 m 56.3 3.2597 62.6986 49.9014
BXD27 f 74.2 3.2597 80.5986 67.8014
BXD27 m 75.6 3.2597 81.9986 69.2014
BXD28 f 71.2 3.2597 77.5986 64.8014
BXD28 m 69.4 3.2597 75.7986 63.0014
BXD31 f 73.9 3.2597 80.2986 67.5014
BXD31 m 60.4 3.2597 66.7986 54.0014
BXD32 f 71.1 3.2597 77.4986 64.7014
BXD32 m 69.2 3.2597 75.5986 62.8014
BXD34 f 62.5 7.289 76.8077 48.1923
BXD34 m 58.5 7.289 72.8077 44.1923
BXD39 f 75.1 3.2597 81.4986 68.7014
BXD39 m 81.6 3.2597 87.9986 75.2014
BXD40 f 53.1 3.2597 59.4986 46.7014
BXD40 m 57.5 3.2597 63.8986 51.1014
BXD42 f 67.3 3.2597 73.6986 60.9014
BXD42 m 63.9 3.2597 70.2986 57.5014
BXD43 f 70.9 3.2597 77.2986 64.5014
BXD43 m 63.7 3.2597 70.0986 57.3014
BXD44 f 78.4 3.2597 84.7986 72.0014
BXD44 m 69.7 3.2597 76.0986 63.3014
BXD48 f 58.3 3.2597 64.6986 51.9014
BXD48 m 59.4 3.2597 65.7986 53.0014
BXD49 f 68.6 3.2597 74.9986 62.2014
BXD49 m 64.3 3.2597 70.6986 57.9014
BXD50 f 71.0 3.2597 77.3986 64.6014
BXD50 m 72.8 3.2597 79.1986 66.4014
BXD51 f 86.1 3.2597 92.4986 79.7014
BXD51 m 84.2 3.2597 90.5986 77.8014
BXD6 f 77.6 3.2597 83.9986 71.2014
BXD6 m 74.8 3.2597 81.1986 68.4014
BXD61 f 76.8 3.2597 83.1986 70.4014
BXD61 m 73.3 3.2597 79.6986 66.9014
BXD62 f 62.0 3.2597 68.3986 55.6014
BXD62 m 57.9 3.2597 64.2986 51.5014
BXD65 f 62.5 4.2083 70.7606 54.2394
BXD65 m 63.1 3.2597 69.4986 56.7014
BXD66 f 60.25 5.1541 70.3671 50.1329
BXD66 m 66.5 5.1541 76.6171 56.3829
BXD68 f 63.0 5.1541 73.1171 52.8829
BXD68 m 70.6667 4.2083 78.9272 62.4061
BXD69 f 59.4 3.2597 65.7986 53.0014
BXD69 m 58.4 3.2597 64.7986 52.0014
BXD70 f 61.7 3.2597 68.0986 55.3014
BXD70 m 58.9 3.2597 65.2986 52.5014
BXD73 f 83.9 3.2597 90.2986 77.5014
BXD73 m 77.5 3.2597 83.8986 71.1014
BXD75 f 56.9 3.2597 63.2986 50.5014
BXD75 m 58.1 3.2597 64.4986 51.7014
BXD77 f 38.25 5.1541 48.3671 28.1329
BXD77 m 58.5 5.1541 68.6171 48.3829
BXD8 f 58.5 3.2597 64.8986 52.1014
BXD8 m 66.8 3.2597 73.1986 60.4014
BXD80 f 79.9 3.2597 86.2986 73.5014
BXD80 m 80.9 3.2597 87.2986 74.5014
BXD81 f 61.0 3.2597 67.3986 54.6014
BXD81 m 58.6 3.2597 64.9986 52.2014
BXD84 f 62.4 3.2597 68.7986 56.0014
BXD84 m 66.7 3.2597 73.0986 60.3014
BXD85 f 62.75 5.1541 72.8671 52.6329
BXD85 m 57.75 5.1541 67.8671 47.6329
BXD86 f 61.9 3.2597 68.2986 55.5014
BXD86 m 60.5 3.2597 66.8986 54.1014
BXD87 f 83.1 3.2597 89.4986 76.7014
BXD87 m 74.2 3.2597 80.5986 67.8014
BXD89 f 64.9 3.2597 71.2986 58.5014
BXD89 m 60.6 3.2597 66.9986 54.2014
BXD90 f 72.1667 4.2083 80.4272 63.9061
BXD90 m 71.6667 4.2083 79.9272 63.4061
BXD92 f 61.5 7.289 75.8077 47.1923
BXD92 m 56.6667 5.9515 68.3489 44.9844
BXD96 f 67.6 3.2597 73.9986 61.2014
BXD96 m 60.9 3.2597 67.2986 54.5014
BXD97 f 63.5 3.2597 69.8986 57.1014
BXD97 m 67.7 3.2597 74.0986 61.3014
BXD98 f 73.1667 4.2083 81.4272 64.9061
BXD98 m 62.7143 3.8961 70.3621 55.0665
C57BL/6J f 68.0 3.2597 74.3986 61.6014
C57BL/6J m 64.6 3.2597 70.9986 58.2014
DBA/2J f 86.9 3.2597 93.2986 80.5014
DBA/2J m 77.1 3.2597 83.4986 70.7014


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD1 both 64.5 5.1541 74.6171 54.3829
BXD100 both 72.45 2.305 76.9745 67.9255
BXD101 both 72.7292 2.7835 78.193 67.2653
BXD102 both 68.75 2.305 73.2745 64.2255
BXD11 both 76.6 2.305 81.1245 72.0755
BXD13 both 72.15 2.305 76.6745 67.6255
BXD14 both 53.1 2.305 57.6245 48.5755
BXD15 both 76.0 2.305 80.5245 71.4755
BXD16 both 62.1 2.305 66.6245 57.5755
BXD18 both 67.0 5.1541 77.1171 56.8829
BXD19 both 64.5 5.1541 74.6171 54.3829
BXD2 both 67.8 2.305 72.3245 63.2755
BXD21 both 61.7 2.305 66.2245 57.1755
BXD27 both 74.9 2.305 79.4245 70.3755
BXD28 both 70.3 2.305 74.8245 65.7755
BXD31 both 67.15 2.305 71.6745 62.6255
BXD32 both 70.15 2.305 74.6745 65.6255
BXD34 both 60.5 5.1541 70.6171 50.3829
BXD39 both 78.35 2.305 82.8745 73.8255
BXD40 both 55.3 2.305 59.8245 50.7755
BXD42 both 65.6 2.305 70.1245 61.0755
BXD43 both 67.3 2.305 71.8245 62.7755
BXD44 both 74.05 2.305 78.5745 69.5255
BXD48 both 58.85 2.305 63.3745 54.3255
BXD49 both 66.45 2.305 70.9745 61.9255
BXD50 both 71.9 2.305 76.4245 67.3755
BXD51 both 85.15 2.305 89.6745 80.6255
BXD6 both 76.2 2.305 80.7245 71.6755
BXD61 both 75.05 2.305 79.5745 70.5255
BXD62 both 59.95 2.305 64.4745 55.4255
BXD65 both 62.8 2.6616 68.0244 57.5756
BXD66 both 63.375 3.6445 70.5289 56.2211
BXD68 both 66.8333 3.327 73.3639 60.3028
BXD69 both 58.9 2.305 63.4245 54.3755
BXD70 both 60.3 2.305 64.8245 55.7755
BXD73 both 80.7 2.305 85.2245 76.1755
BXD75 both 57.5 2.305 62.0245 52.9755
BXD77 both 48.375 3.6445 55.5289 41.2211
BXD8 both 62.65 2.305 67.1745 58.1255
BXD80 both 80.4 2.305 84.9245 75.8755
BXD81 both 59.8 2.305 64.3245 55.2755
BXD84 both 64.55 2.305 69.0745 60.0255
BXD85 both 60.25 3.6445 67.4039 53.0961
BXD86 both 61.2 2.305 65.7245 56.6755
BXD87 both 78.65 2.305 83.1745 74.1255
BXD89 both 62.75 2.305 67.2745 58.2255
BXD90 both 71.9167 2.9757 77.7578 66.0756
BXD92 both 59.0833 4.705 68.3189 49.8477
BXD96 both 64.25 2.305 68.7745 59.7255
BXD97 both 65.6 2.305 70.1245 61.0755
BXD98 both 67.9405 2.8675 73.5691 62.3118
C57BL/6J both 66.3 2.305 70.8245 61.7755
DBA/2J both 82.0 2.305 86.5245 77.4755




  GWAS USING LINEAR MIXED MODELS