Phenotype measure:   Schoenrock1   LD_dist_dk_VDD

ID, description, units MPD:61241   LD_dist_dk_VDD   distance traveled in dark side, 10 min test   [cm]  vitamin D-deficient diet
various diets study
Data set, strains Schoenrock1   CC RIX   16 strains     sex: f     age: 8-9wks
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Ontology mappings

  STRAIN COMPARISON PLOT
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Schoenrock1 - distance traveled in dark side, 10 min test vitamin D-deficient diet



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested16 strains
Mean of the strain means1341   cm
Median of the strain means1290   cm
SD of the strain means± 529
Coefficient of variation (CV)0.395
Min–max range of strain means387   –   2437   cm
Mean sample size per strain10.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 15 57953931.2549 3863595.417 20.2683 < 0.0001
Residuals 160 30499570.6951 190622.3168


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(001 x 011) f 1122.0 264.0   20 59.1 0.235 557.0, 1597.0 -0.41
RIX:CC(003 x 014) f 1359.0 280.0   9 93.3 0.206 926.0, 1783.0 0.03
RIX:CC(004 x 017) f 2437.0 648.0   12 187.0 0.266 1796.0, 4083.0 2.07
RIX:CC(006 x 026) f 1726.0 202.0   9 67.4 0.117 1421.0, 2030.0 0.73
RIX:CC(011 x 001) f 1192.0 347.0   11 105.0 0.291 222.0, 1503.0 -0.28
RIX:CC(014 x 003) f 1324.0 131.0   6 53.5 0.099 1144.0, 1515.0 -0.03
RIX:CC(017 x 004) f 2206.0 595.0   11 179.0 0.27 1560.0, 3704.0 1.64
RIX:CC(023 x 047) f 1137.0 436.0   8 154.0 0.383 357.0, 1436.0 -0.38
RIX:CC(026 x 006) f 1747.0 953.0   14 255.0 0.545 1200.0, 5000.0 0.77
RIX:CC(032 x 042) f 1254.0 231.0   19 52.9 0.184 869.0, 1636.0 -0.16
RIX:CC(035 x 062) f 1298.0 351.0   5 157.0 0.271 795.0, 1648.0 -0.08
RIX:CC(041 x 051) f 397.0 355.0   20 79.4 0.894 -1.78
RIX:CC(042 x 032) f 1349.0 343.0   6 140.0 0.254 984.0, 1819.0 0.02
RIX:CC(047 x 023) f 1281.0 226.0   6 92.2 0.176 1064.0, 1568.0 -0.11
RIX:CC(051 x 041) f 387.0 218.0   14 58.4 0.564 3.9, 703.0 -1.8
RIX:CC(062 x 035) f 1234.0 255.0   6 104.0 0.206 960.0, 1549.0 -0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(001 x 011) f 1121.945 97.6274 1314.7496 929.1404
RIX:CC(003 x 014) f 1358.6333 145.5344 1646.0494 1071.2172
RIX:CC(004 x 017) f 2436.6917 126.0365 2685.6013 2187.782
RIX:CC(006 x 026) f 1726.4778 145.5344 2013.8939 1439.0617
RIX:CC(011 x 001) f 1192.2545 131.6408 1452.2322 932.2769
RIX:CC(014 x 003) f 1324.1167 178.2425 1676.128 972.1053
RIX:CC(017 x 004) f 2205.9364 131.6408 2465.914 1945.9587
RIX:CC(023 x 047) f 1136.9125 154.3625 1441.7633 832.0617
RIX:CC(026 x 006) f 1747.1857 116.6871 1977.6313 1516.7402
RIX:CC(032 x 042) f 1253.6789 100.1636 1451.4923 1055.8656
RIX:CC(035 x 062) f 1298.22 195.2549 1683.8291 912.6109
RIX:CC(041 x 051) f 397.285 97.6274 590.0896 204.4804
RIX:CC(042 x 032) f 1349.05 178.2425 1701.0614 997.0386
RIX:CC(047 x 023) f 1281.1167 178.2425 1633.128 929.1053
RIX:CC(051 x 041) f 387.0643 116.6871 617.5098 156.6187
RIX:CC(062 x 035) f 1233.8333 178.2425 1585.8447 881.822




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA