Project measure / variable:   Tordoff1   NH4Cl_pref100

ID, description, units MPD:6124   NH4Cl_pref100   preference for NH4Cl (ammonium chloride) solutions   [%]  concentration 100 mM  
Data set, strains Tordoff1   inbred   28 strains     sex: m     age: 4-12wks
Procedure bottle choice test
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  STRAIN COMPARISON PLOT
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Tordoff1 - preference for NH4Cl (ammonium chloride) solutions concentration 100 mM



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means35.4   %
Median of the strain means34.8   %
SD of the strain means± 10.0
Coefficient of variation (CV)0.283
Min–max range of strain means11.4   –   58.7   %
Mean sample size per strain11.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 31546.02 1168.3711 3.4435 < 0.0001
Residuals 287 97377.33 339.2938


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 44.7 12.4   11 3.74 0.277 25.6, 69.2 0.93
A/J m 34.8 20.0   12 5.78 0.575 6.4, 66.0 -0.05
AKR/J m 34.9 27.0   12 7.81 0.775 3.1, 88.7 -0.04
BALB/cByJ m 32.9 18.7   11 5.63 0.568 12.0, 71.7 -0.24
BUB/BnJ m 40.3 12.7   7 4.8 0.315 22.4, 61.0 0.49
C3H/HeJ m 34.2 13.6   12 3.93 0.398 5.4, 48.7 -0.11
C57BL/6J m 44.7 17.6   12 5.08 0.394 12.5, 68.0 0.93
C57L/J m 45.4 12.2   11 3.69 0.269 25.8, 62.3 1.0
CAST/EiJ m 38.6 17.4   12 5.01 0.45 1.0, 62.0 0.32
CBA/J m 34.2 18.9   11 5.71 0.553 2.8, 55.4 -0.11
CE/J m 43.5 33.8   11 10.2 0.778 1.3, 92.6 0.81
DBA/2J m 51.3 22.3   12 6.44 0.435 25.3, 96.7 1.59
FVB/NJ m 26.9 18.6   12 5.36 0.689 2.0, 64.4 -0.84
I/LnJ m 29.7 15.3   10 4.82 0.514 7.3, 52.7 -0.56
KK/HlJ m 30.5 18.9   6 7.73 0.621 8.3, 53.5 -0.48
LP/J m 58.7 18.2   12 5.26 0.31 31.5, 93.1 2.33
NOD/ShiLtJ m 38.1 17.4   12 5.02 0.457 3.6, 65.9 0.27
NZB/BlNJ m 44.9 10.5   12 3.04 0.234 28.3, 65.5 0.95
P/J m 26.2 17.2   12 4.95 0.654 1.6, 50.0 -0.91
PL/J m 38.4 15.9   11 4.81 0.416 13.5, 59.2 0.3
RBF/DnJ m 39.0 13.9   12 4.0 0.356 24.1, 64.8 0.36
RF/J m 30.3 15.9   11 4.8 0.525 3.4, 53.0 -0.5
RIIIS/J m 37.3 16.8   12 4.86 0.452 9.5, 61.1 0.19
SEA/GnJ m 18.5 18.8   12 5.44 1.02 1.2, 57.3 -1.68
SJL/J m 20.1 14.9   11 4.51 0.744 3.6, 48.1 -1.52
SM/J m 32.5 24.8   12 7.17 0.764 6.1, 97.8 -0.28
SPRET/EiJ m 11.4 12.2   12 3.51 1.07 2.2, 38.3 -2.39
SWR/J m 27.8 19.5   12 5.63 0.702 3.1, 55.9 -0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 44.7182 5.5538 55.6496 33.7868
A/J m 34.8167 5.3174 45.2827 24.3507
AKR/J m 34.9083 5.3174 45.3743 24.4423
BALB/cByJ m 32.8727 5.5538 43.8041 21.9413
BUB/BnJ m 40.3 6.9621 54.0032 26.5968
C3H/HeJ m 34.225 5.3174 44.691 23.759
C57BL/6J m 44.6917 5.3174 55.1577 34.2257
C57L/J m 45.4273 5.5538 56.3587 34.4959
CAST/EiJ m 38.6083 5.3174 49.0743 28.1423
CBA/J m 34.2 5.5538 45.1314 23.2686
CE/J m 43.4909 5.5538 54.4223 32.5595
DBA/2J m 51.2583 5.3174 61.7243 40.7923
FVB/NJ m 26.9083 5.3174 37.3743 16.4423
I/LnJ m 29.67 5.8249 41.1349 18.2051
KK/HlJ m 30.5167 7.5199 45.3178 15.7155
LP/J m 58.7167 5.3174 69.1827 48.2507
NOD/ShiLtJ m 38.0917 5.3174 48.5577 27.6257
NZB/BlNJ m 44.9 5.3174 55.366 34.434
P/J m 26.25 5.3174 36.716 15.784
PL/J m 38.3545 5.5538 49.2859 27.4232
RBF/DnJ m 39.025 5.3174 49.491 28.559
RF/J m 30.3273 5.5538 41.2587 19.3959
RIIIS/J m 37.25 5.3174 47.716 26.784
SEA/GnJ m 18.55 5.3174 29.016 8.084
SJL/J m 20.1 5.5538 31.0314 9.1686
SM/J m 32.5083 5.3174 42.9743 22.0423
SPRET/EiJ m 11.4 5.3174 21.866 0.934
SWR/J m 27.75 5.3174 38.216 17.284




  GWAS USING LINEAR MIXED MODELS