Project measure / variable:   Tordoff1   CaCl2_pref100

ID, description, units MPD:6119   CaCl2_pref100   preference for CaCl2 (calcium chloride) solutions   [%]  concentration 100 mM  
Data set, strains Tordoff1   inbred   28 strains     sex: m     age: 4-12wks
Procedure bottle choice test
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  STRAIN COMPARISON PLOT
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Tordoff1 - preference for CaCl2 (calcium chloride) solutions concentration 100 mM



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means6.64   %
Median of the strain means4.63   %
SD of the strain means± 5.26
Coefficient of variation (CV)0.792
Min–max range of strain means2.12   –   25.2   %
Mean sample size per strain11.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 8681.0118 321.519 12.5844 < 0.0001
Residuals 293 7485.8303 25.5489


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 25.2 12.8   12 3.68 0.506 4.4, 43.2 3.53
A/J m 5.58 1.61   12 0.464 0.288 3.6, 9.1 -0.2
AKR/J m 2.12 0.776   12 0.224 0.366 1.4, 3.6 -0.86
BALB/cByJ m 5.31 5.58   12 1.61 1.05 2.0, 22.6 -0.25
BUB/BnJ m 12.1 9.87   7 3.73 0.815 1.7, 30.6 1.04
C3H/HeJ m 16.1 8.79   12 2.54 0.547 5.6, 33.3 1.8
C57BL/6J m 4.48 1.6   11 0.482 0.357 1.9, 7.3 -0.41
C57L/J m 8.56 4.48   11 1.35 0.523 2.4, 15.4 0.36
CAST/EiJ m 6.68 4.22   12 1.22 0.631 1.1, 16.3 0.01
CBA/J m 4.33 1.19   12 0.344 0.275 3.1, 7.5 -0.44
CE/J m 3.06 0.902   12 0.26 0.295 1.5, 4.5 -0.68
DBA/2J m 11.9 8.72   12 2.52 0.734 1.4, 27.7 1.0
FVB/NJ m 5.77 6.11   12 1.76 1.06 1.9, 24.5 -0.17
I/LnJ m 3.41 1.15   11 0.348 0.338 1.4, 5.0 -0.61
KK/HlJ m 2.5 0.46   6 0.188 0.184 2.0, 3.1 -0.79
LP/J m 7.11 6.63   12 1.91 0.933 3.4, 27.6 0.09
NOD/ShiLtJ m 3.23 2.54   12 0.733 0.787 1.3, 10.1 -0.65
NZB/BlNJ m 15.2 7.74   12 2.23 0.509 3.3, 32.6 1.63
P/J m 2.87 1.13   12 0.326 0.394 1.4, 4.3 -0.72
PL/J m 9.72 7.31   12 2.11 0.752 2.2, 27.7 0.59
RBF/DnJ m 3.34 0.938   12 0.271 0.281 1.5, 4.6 -0.63
RF/J m 3.88 0.779   12 0.225 0.201 2.6, 5.2 -0.52
RIIIS/J m 5.12 2.43   12 0.7 0.474 2.4, 11.1 -0.29
SEA/GnJ m 2.64 1.3   12 0.376 0.493 1.1, 5.3 -0.76
SJL/J m 4.0 1.12   11 0.338 0.28 2.2, 6.5 -0.5
SM/J m 4.38 4.48   12 1.29 1.02 2.1, 18.2 -0.43
SPRET/EiJ m 4.78 0.925   12 0.267 0.193 3.0, 6.4 -0.35
SWR/J m 2.56 1.31   12 0.378 0.511 1.1, 5.3 -0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 25.1917 1.4591 28.0634 22.32
A/J m 5.5833 1.4591 8.455 2.7116
AKR/J m 2.1167 1.4591 4.9884 0.0
BALB/cByJ m 5.3083 1.4591 8.18 2.4366
BUB/BnJ m 12.1143 1.9105 15.8742 8.3543
C3H/HeJ m 16.0667 1.4591 18.9384 13.195
C57BL/6J m 4.4818 1.524 7.4812 1.4824
C57L/J m 8.5636 1.524 11.563 5.5642
CAST/EiJ m 6.6833 1.4591 9.555 3.8116
CBA/J m 4.325 1.4591 7.1967 1.4533
CE/J m 3.0583 1.4591 5.93 0.1866
DBA/2J m 11.8833 1.4591 14.755 9.0116
FVB/NJ m 5.7667 1.4591 8.6384 2.895
I/LnJ m 3.4091 1.524 6.4085 0.4097
KK/HlJ m 2.5 2.0635 6.5612 0.0
LP/J m 7.1083 1.4591 9.98 4.2366
NOD/ShiLtJ m 3.225 1.4591 6.0967 0.3533
NZB/BlNJ m 15.2 1.4591 18.0717 12.3283
P/J m 2.8667 1.4591 5.7384 0.0
PL/J m 9.7167 1.4591 12.5884 6.845
RBF/DnJ m 3.3417 1.4591 6.2134 0.47
RF/J m 3.875 1.4591 6.7467 1.0033
RIIIS/J m 5.1167 1.4591 7.9884 2.245
SEA/GnJ m 2.6417 1.4591 5.5134 0.0
SJL/J m 4.0 1.524 6.9994 1.0006
SM/J m 4.375 1.4591 7.2467 1.5033
SPRET/EiJ m 4.7833 1.4591 7.655 1.9116
SWR/J m 2.5583 1.4591 5.43 0.0




  GWAS USING LINEAR MIXED MODELS