Project measure / variable:   Tordoff1   CaCl2_pref10

ID, description, units MPD:6117   CaCl2_pref10   preference for CaCl2 (calcium chloride) solutions   [%]  concentration 10 mM  
Data set, strains Tordoff1   inbred   28 strains     sex: m     age: 4-12wks
Procedure bottle choice test
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  STRAIN COMPARISON PLOT
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Tordoff1 - preference for CaCl2 (calcium chloride) solutions concentration 10 mM



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means34.7   %
Median of the strain means33.3   %
SD of the strain means± 13.8
Coefficient of variation (CV)0.397
Min–max range of strain means8.98   –   61.6   %
Mean sample size per strain11.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 55188.6293 2044.0233 7.3895 < 0.0001
Residuals 284 78557.5081 276.6109


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 54.4 12.8   11 3.87 0.236 29.9, 75.9 1.43
A/J m 44.1 10.7   12 3.1 0.244 22.0, 56.4 0.68
AKR/J m 28.6 27.8   12 8.01 0.97 2.9, 82.6 -0.44
BALB/cByJ m 35.3 21.6   11 6.5 0.611 3.8, 63.1 0.04
BUB/BnJ m 56.3 11.0   7 4.16 0.196 36.8, 67.1 1.56
C3H/HeJ m 54.2 9.25   12 2.67 0.171 40.0, 70.7 1.41
C57BL/6J m 33.3 15.6   11 4.72 0.47 9.8, 56.3 -0.1
C57L/J m 34.9 10.8   11 3.27 0.311 16.2, 56.2 0.01
CAST/EiJ m 29.6 15.1   12 4.34 0.508 2.1, 50.0 -0.37
CBA/J m 47.7 28.6   11 8.62 0.599 1.5, 94.4 0.94
CE/J m 8.98 2.94   12 0.85 0.328 4.2, 12.9 -1.87
DBA/2J m 40.3 17.9   12 5.17 0.444 3.5, 63.5 0.4
FVB/NJ m 25.7 13.0   12 3.74 0.504 10.4, 44.4 -0.65
I/LnJ m 17.7 7.86   11 2.37 0.443 2.3, 23.9 -1.23
KK/HlJ m 12.0 6.4   6 2.61 0.533 5.5, 22.8 -1.65
LP/J m 61.6 15.5   12 4.48 0.252 34.1, 84.8 1.95
NOD/ShiLtJ m 30.8 17.3   11 5.23 0.563 8.1, 60.4 -0.28
NZB/BlNJ m 47.5 7.2   12 2.08 0.152 34.8, 58.8 0.93
P/J m 18.8 16.7   12 4.81 0.884 4.4, 50.8 -1.15
PL/J m 47.8 14.0   12 4.03 0.293 20.4, 73.7 0.95
RBF/DnJ m 32.9 9.8   9 3.27 0.298 16.1, 45.6 -0.13
RF/J m 33.3 15.5   11 4.67 0.465 6.6, 57.1 -0.1
RIIIS/J m 42.3 24.6   12 7.11 0.583 16.2, 95.7 0.55
SEA/GnJ m 25.9 17.2   12 4.96 0.664 4.1, 48.3 -0.64
SJL/J m 23.6 12.0   11 3.63 0.511 3.9, 38.2 -0.81
SM/J m 41.8 28.7   11 8.65 0.687 4.9, 83.5 0.51
SPRET/EiJ m 18.4 18.2   12 5.26 0.99 2.0, 51.1 -1.18
SWR/J m 24.7 14.8   12 4.27 0.6 7.0, 50.7 -0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 54.3818 5.0146 64.2524 44.5113
A/J m 44.0667 4.8011 53.517 34.6163
AKR/J m 28.6083 4.8011 38.0587 19.158
BALB/cByJ m 35.2818 5.0146 45.1524 25.4113
BUB/BnJ m 56.3 6.2862 68.6734 43.9266
C3H/HeJ m 54.1583 4.8011 63.6087 44.708
C57BL/6J m 33.3273 5.0146 43.1978 23.4567
C57L/J m 34.8636 5.0146 44.7342 24.9931
CAST/EiJ m 29.6417 4.8011 39.092 20.1913
CBA/J m 47.7182 5.0146 57.5887 37.8476
CE/J m 8.9833 4.8011 18.4337 0.0
DBA/2J m 40.3333 4.8011 49.7837 30.883
FVB/NJ m 25.7083 4.8011 35.1587 16.258
I/LnJ m 17.7182 5.0146 27.5887 7.8476
KK/HlJ m 12.0 6.7898 25.3648 0.0
LP/J m 61.6333 4.8011 71.0837 52.183
NOD/ShiLtJ m 30.8091 5.0146 40.6796 20.9385
NZB/BlNJ m 47.5 4.8011 56.9503 38.0497
P/J m 18.8333 4.8011 28.2837 9.383
PL/J m 47.7583 4.8011 57.2087 38.308
RBF/DnJ m 32.8889 5.5439 43.8012 21.9766
RF/J m 33.3 5.0146 43.1705 23.4295
RIIIS/J m 42.3 4.8011 51.7503 32.8497
SEA/GnJ m 25.8833 4.8011 35.3337 16.433
SJL/J m 23.5818 5.0146 33.4524 13.7113
SM/J m 41.7727 5.0146 51.6433 31.9022
SPRET/EiJ m 18.4167 4.8011 27.867 8.9663
SWR/J m 24.6833 4.8011 34.1337 15.233




  GWAS USING LINEAR MIXED MODELS