Phenotype measure:   Kliethermes1   pct_num_OP

ID, description, units MPD:59943   pct_num_OP   percentage of counts of head dipping at holes with objects during object preference task to assess novelty seeking, 10 min test   [%]
Data set, strains Kliethermes1   inbred   14 strains     sex: both     age: 8wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Kliethermes1 - percentage of counts of head dipping at holes with objects during object preference task to assess novelty seeking, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means53.9   % 54.7   %
Median of the strain means56.0   % 53.4   %
SD of the strain means± 6.48 ± 6.14
Coefficient of variation (CV)0.120 0.112
Min–max range of strain means37.0   –   62.8   % 45.9   –   65.2   %
Mean sample size per strain6.3   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.534 4.534 0.0133 0.9082
strain 13 4542.8858 349.4528 1.0274 0.4278
sex:strain 13 1712.3033 131.7156 0.3873 0.9723
Residuals 158 53738.9451 340.1199


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 37.0 34.4   6 14.1 0.931 -2.61
129S1/SvImJ m 51.3 27.9   6 11.4 0.544 16.7, 100.0 -0.55
A/J f 55.8 44.2   6 18.0 0.792 0.29
A/J m 65.2 23.7   6 9.68 0.364 23.8, 92.9 1.71
AKR/J f 59.9 15.4   6 6.3 0.258 42.2, 84.0 0.92
AKR/J m 46.0 11.9   6 4.87 0.259 32.4, 58.1 -1.42
BALB/cByJ f 50.3 8.14   5 3.64 0.162 38.1, 58.3 -0.56
BALB/cByJ m 53.3 42.6   6 17.4 0.8 -0.23
BTBR T+ Itpr3tf/J f 57.0 12.0   6 4.9 0.21 44.8, 75.0 0.47
BTBR T+ Itpr3tf/J m 61.6 13.0   6 5.3 0.211 43.8, 80.0 1.13
C3H/HeJ f 62.8 7.7   6 3.14 0.123 51.0, 71.8 1.37
C3H/HeJ m 63.0 14.7   6 5.98 0.233 40.7, 80.0 1.35
C57BL/6J f 56.5 15.5   12 4.48 0.275 23.5, 81.2 0.4
C57BL/6J m 51.6 16.2   12 4.69 0.315 22.2, 75.0 -0.5
C57L/J f 49.8 12.2   6 5.0 0.246 34.9, 66.1 -0.64
C57L/J m 49.1 8.95   6 3.65 0.182 37.0, 60.8 -0.91
DBA/2J f 56.1 9.67   12 2.79 0.172 37.8, 68.1 0.34
DBA/2J m 57.6 10.4   12 3.01 0.181 46.0, 73.7 0.47
FVB/NJ f 46.8 7.4   6 3.02 0.158 35.0, 54.6 -1.1
FVB/NJ m 45.9 12.7   6 5.2 0.278 35.6, 69.8 -1.43
NOD/ShiLtJ f 53.4 2.24   5 1.0 0.0419 50.9, 55.4 -0.08
NOD/ShiLtJ m 51.4 11.0   6 4.48 0.213 38.9, 68.9 -0.54
NZB/BlNJ f 53.1 22.2   6 9.05 0.417 10.3, 72.2 -0.13
NZB/BlNJ m 53.5 14.4   6 5.88 0.269 36.7, 72.4 -0.19
PERA/EiJ f 59.3 13.0   5 5.8 0.219 42.6, 77.3 0.83
PERA/EiJ m 60.5 21.8   4 10.9 0.36 30.0, 79.3 0.95
PL/J f 57.1 7.06   6 2.88 0.124 47.4, 66.2 0.49
PL/J m 55.6 13.0   5 5.82 0.234 42.0, 74.5 0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 37.005 7.5291 51.8756 22.1344
129S1/SvImJ m 51.3117 7.5291 66.1822 36.4411
A/J f 55.7933 7.5291 70.6639 40.9228
A/J m 65.155 7.5291 80.0256 50.2844
AKR/J f 59.8617 7.5291 74.7322 44.9911
AKR/J m 46.0117 7.5291 60.8822 31.1411
BALB/cByJ f 50.344 8.2477 66.6339 34.0541
BALB/cByJ m 53.29 7.5291 68.1606 38.4194
BTBR T+ Itpr3tf/J f 57.035 7.5291 71.9056 42.1644
BTBR T+ Itpr3tf/J m 61.5983 7.5291 76.4689 46.7278
C3H/HeJ f 62.79 7.5291 77.6606 47.9194
C3H/HeJ m 62.9617 7.5291 77.8322 48.0911
C57BL/6J f 56.5325 5.3238 67.0476 46.0174
C57BL/6J m 51.5992 5.3238 62.1143 41.0841
C57L/J f 49.8417 7.5291 64.7122 34.9711
C57L/J m 49.0683 7.5291 63.9389 34.1978
DBA/2J f 56.1275 5.3238 66.6426 45.6124
DBA/2J m 57.6033 5.3238 68.1184 47.0882
FVB/NJ f 46.7667 7.5291 61.6372 31.8961
FVB/NJ m 45.935 7.5291 60.8056 31.0644
NOD/ShiLtJ f 53.37 8.2477 69.6599 37.0801
NOD/ShiLtJ m 51.4217 7.5291 66.2922 36.5511
NZB/BlNJ f 53.1483 7.5291 68.0189 38.2778
NZB/BlNJ m 53.5383 7.5291 68.4089 38.6678
PERA/EiJ f 59.33 8.2477 75.6199 43.0401
PERA/EiJ m 60.4875 9.2212 78.7002 42.2748
PL/J f 57.1017 7.5291 71.9722 42.2311
PL/J m 55.622 8.2477 71.9119 39.3321


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 44.1583 5.3238 54.6734 33.6432
A/J both 60.4742 5.3238 70.9893 49.9591
AKR/J both 52.9367 5.3238 63.4518 42.4216
BALB/cByJ both 51.817 5.5837 62.8453 40.7887
BTBR T+ Itpr3tf/J both 59.3167 5.3238 69.8318 48.8016
C3H/HeJ both 62.8758 5.3238 73.3909 52.3607
C57BL/6J both 54.0658 3.7645 61.5011 46.6305
C57L/J both 49.455 5.3238 59.9701 38.9399
DBA/2J both 56.8654 3.7645 64.3007 49.4301
FVB/NJ both 46.3508 5.3238 56.8659 35.8357
NOD/ShiLtJ both 52.3958 5.5837 63.4241 41.3675
NZB/BlNJ both 53.3433 5.3238 63.8584 42.8282
PERA/EiJ both 59.9088 6.1857 72.1262 47.6913
PL/J both 56.3618 5.5837 67.3901 45.3335




  GWAS USING LINEAR MIXED MODELS