Project measure / variable:   Palmer6   immobility

ID, description, units MPD:59831   immobility   duration of immobility   [s]  
Data set, strains Palmer6   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure forced swim test
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  STRAIN COMPARISON PLOT
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Palmer6 - duration of immobility



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means41.4   s 30.0   s
Median of the strain means41.8   s 26.6   s
SD of the strain means± 23.9 ± 20.0
Coefficient of variation (CV)0.576 0.666
Min–max range of strain means1.62   –   92.6   s 2.12   –   86.7   s
Mean sample size per strain5.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13168.8801 13168.8801 16.9141 0.0001
strain 29 139412.8254 4807.3388 6.1746 < 0.0001
sex:strain 29 23305.1217 803.6249 1.0322 0.4242
Residuals 304 236686.227 778.5731


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 68.9 34.9   6 14.2 0.506 26.1, 131.0 1.15
129SB6F1 m 37.0 15.9   5 7.09 0.429 20.6, 60.4 0.35
AB6F1 f 52.7 38.9   6 15.9 0.739 0.47
AB6F1 m 50.0 28.0   7 10.6 0.561 4.9, 96.2 1.0
AKB6F1 f 25.1 24.2   6 9.87 0.964 9.8, 72.3 -0.68
AKB6F1 m 36.7 26.7   5 11.9 0.727 0.6, 66.4 0.33
BKSB6F1 f 23.7 25.1   6 10.2 1.06 5.1, 73.1 -0.74
BKSB6F1 m 27.6 17.2   6 7.0 0.621 5.7, 50.4 -0.12
BTBRB6F1 f 53.4 37.0   5 16.6 0.693 25.7, 116.0 0.5
BTBRB6F1 m 32.2 29.0   6 11.8 0.901 1.1, 76.5 0.11
BUB6F1 f 37.3 27.4   4 13.7 0.734 9.7, 71.2 -0.17
BUB6F1 m 41.6 19.6   5 8.76 0.471 17.4, 61.7 0.58
C3B6F1 f 11.5 15.4   5 6.89 1.34 0.7, 37.8 -1.25
C3B6F1 m 14.7 19.7   5 8.82 1.34 -0.77
C57BL/6J f 61.6 41.4   17 10.0 0.673 0.84
C57BL/6J m 51.9 29.7   16 7.42 0.571 10.1, 134.0 1.09
C58B6F1 f 1.62 1.54   5 0.688 0.95 -1.67
C58B6F1 m 10.0 13.0   5 5.83 1.3 0.6, 32.4 -1.0
CBAB6F1 f 30.7 29.1   6 11.9 0.949 1.3, 85.1 -0.45
CBAB6F1 m 24.8 15.0   8 5.32 0.606 1.7, 47.6 -0.26
CByB6F1 f 40.9 30.2   6 12.3 0.739 11.4, 77.7 -0.02
CByB6F1 m 19.1 15.3   6 6.23 0.796 1.3, 45.3 -0.55
D2B6F1 f 70.6 28.0   6 11.4 0.397 24.1, 95.8 1.22
D2B6F1 m 75.8 40.2   5 18.0 0.53 50.6, 147.0 2.29
DDYB6F1 f 54.5 46.8   6 19.1 0.858 9.7, 132.0 0.55
DDYB6F1 m 33.6 22.9   7 8.66 0.682 8.3, 65.1 0.18
FVBB6F1 f 23.4 19.6   5 8.76 0.837 0.7, 51.4 -0.75
FVBB6F1 m 16.0 15.4   6 6.3 0.964 0.4, 44.6 -0.7
IB6F1 f 92.6 29.8   4 14.9 0.322 48.7, 114.0 2.14
IB6F1 m 34.5 27.0   6 11.0 0.784 6.3, 82.3 0.22
KKB6F1 f 43.2 51.0   6 20.8 1.18 2.9, 126.0 0.07
KKB6F1 m 25.6 11.4   5 5.12 0.446 11.5, 37.6 -0.22
LGB6F1 f 30.7 36.1   6 14.7 1.18 0.3, 94.5 -0.45
LGB6F1 m 19.4 15.5   7 5.87 0.802 2.9, 47.6 -0.53
LPB6F1 f 72.9 54.0   6 22.1 0.742 13.2, 151.0 1.32
LPB6F1 m 86.7 37.9   5 17.0 0.437 57.3, 150.0 2.83
MAB6F1 f 87.9 37.9   6 15.5 0.431 35.2, 140.0 1.95
MAB6F1 m 42.9 16.6   6 6.79 0.388 20.5, 65.6 0.64
MRLB6F1 f 51.6 27.0   6 11.0 0.522 22.3, 94.5 0.43
MRLB6F1 m 45.4 43.3   6 17.7 0.954 7.4, 103.0 0.77
NODB6F1 f 62.9 30.0   7 11.3 0.477 8.0, 97.4 0.9
NODB6F1 m 18.0 14.6   6 5.96 0.812 -0.6
NONB6F1 f 43.7 17.3   5 7.74 0.396 21.8, 62.2 0.1
NONB6F1 m 28.1 17.7   4 8.84 0.629 9.8, 50.0 -0.1
NZBB6F1 f 30.7 40.4   6 16.5 1.32 -0.45
NZBB6F1 m 12.6 12.1   6 4.94 0.964 0.5, 26.8 -0.87
NZWB6F1 f 56.5 43.0   6 17.6 0.762 6.7, 112.0 0.63
NZWB6F1 m 54.1 22.6   5 10.1 0.419 20.5, 75.8 1.2
PLB6F1 f 15.1 15.6   5 6.96 1.03 2.4, 39.8 -1.1
PLB6F1 m 19.6 8.25   5 3.69 0.422 9.6, 29.7 -0.52
RIIIB6F1 f 10.9 11.6   6 4.73 1.06 -1.28
RIIIB6F1 m 2.12 3.24   6 1.32 1.53 -1.39
SEAB6F1 f 42.8 19.9   6 8.12 0.464 18.4, 64.6 0.06
SEAB6F1 m 19.8 10.1   5 4.52 0.509 9.0, 30.1 -0.51
SJLB6F1 f 13.8 18.4   6 7.53 1.33 -1.16
SJLB6F1 m 7.95 6.34   6 2.59 0.797 0.8, 19.8 -1.1
SMB6F1 f 21.0 29.3   6 12.0 1.39 0.3, 76.6 -0.86
SMB6F1 m 5.6 4.31   6 1.76 0.77 0.1, 13.0 -1.22
SWRB6F1 f 10.5 15.8   6 6.46 1.51 1.6, 41.9 -1.3
SWRB6F1 m 7.1 9.21   6 3.76 1.3 -1.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 68.8667 11.3913 91.2825 46.4508
129SB6F1 m 36.96 12.4786 61.5153 12.4047
AB6F1 f 52.7 11.3913 75.1158 30.2842
AB6F1 m 50.0 10.5463 70.753 29.247
AKB6F1 f 25.1 11.3913 47.5158 2.6842
AKB6F1 m 36.7 12.4786 61.2553 12.1447
BKSB6F1 f 23.7167 11.3913 46.1325 1.3008
BKSB6F1 m 27.6333 11.3913 50.0492 5.2175
BTBRB6F1 f 53.4 12.4786 77.9553 28.8447
BTBRB6F1 m 32.2 11.3913 54.6158 9.7842
BUB6F1 f 37.3 13.9515 64.7537 9.8463
BUB6F1 m 41.62 12.4786 66.1753 17.0647
C3B6F1 f 11.46 12.4786 36.0153 0.0
C3B6F1 m 14.74 12.4786 39.2953 0.0
C57BL/6J f 61.5941 6.7675 74.9111 48.2771
C57BL/6J m 51.9313 6.9757 65.6581 38.2044
C58B6F1 f 1.62 12.4786 26.1753 0.0
C58B6F1 m 10.04 12.4786 34.5953 0.0
CBAB6F1 f 30.6667 11.3913 53.0825 8.2508
CBAB6F1 m 24.8375 9.8652 44.2502 5.4248
CByB6F1 f 40.8833 11.3913 63.2992 18.4675
CByB6F1 m 19.15 11.3913 41.5658 0.0
D2B6F1 f 70.5667 11.3913 92.9825 48.1508
D2B6F1 m 75.8 12.4786 100.3553 51.2447
DDYB6F1 f 54.5167 11.3913 76.9325 32.1008
DDYB6F1 m 33.5857 10.5463 54.3387 12.8327
FVBB6F1 f 23.42 12.4786 47.9753 0.0
FVBB6F1 m 16.0 11.3913 38.4158 0.0
IB6F1 f 92.575 13.9515 120.0287 65.1213
IB6F1 m 34.4833 11.3913 56.8992 12.0675
KKB6F1 f 43.25 11.3913 65.6658 20.8342
KKB6F1 m 25.64 12.4786 50.1953 1.0847
LGB6F1 f 30.6833 11.3913 53.0992 8.2675
LGB6F1 m 19.3714 10.5463 40.1244 0.0
LPB6F1 f 72.85 11.3913 95.2658 50.4342
LPB6F1 m 86.72 12.4786 111.2753 62.1647
MAB6F1 f 87.85 11.3913 110.2658 65.4342
MAB6F1 m 42.9333 11.3913 65.3492 20.5175
MRLB6F1 f 51.65 11.3913 74.0658 29.2342
MRLB6F1 m 45.3833 11.3913 67.7992 22.9675
NODB6F1 f 62.8857 10.5463 83.6387 42.1327
NODB6F1 m 17.9833 11.3913 40.3992 0.0
NONB6F1 f 43.66 12.4786 68.2153 19.1047
NONB6F1 m 28.125 13.9515 55.5787 0.6713
NZBB6F1 f 30.65 11.3913 53.0658 8.2342
NZBB6F1 m 12.5667 11.3913 34.9825 0.0
NZWB6F1 f 56.4833 11.3913 78.8992 34.0675
NZWB6F1 m 54.06 12.4786 78.6153 29.5047
PLB6F1 f 15.12 12.4786 39.6753 0.0
PLB6F1 m 19.56 12.4786 44.1153 0.0
RIIIB6F1 f 10.9 11.3913 33.3158 0.0
RIIIB6F1 m 2.1167 11.3913 24.5325 0.0
SEAB6F1 f 42.8167 11.3913 65.2325 20.4008
SEAB6F1 m 19.84 12.4786 44.3953 0.0
SJLB6F1 f 13.8333 11.3913 36.2492 0.0
SJLB6F1 m 7.95 11.3913 30.3658 0.0
SMB6F1 f 21.05 11.3913 43.4658 0.0
SMB6F1 m 5.6 11.3913 28.0158 0.0
SWRB6F1 f 10.4667 11.3913 32.8825 0.0
SWRB6F1 m 7.1 11.3913 29.5158 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 52.9133 8.448 69.5374 36.2893
AB6F1 both 51.35 7.7619 66.6238 36.0762
AKB6F1 both 30.9 8.448 47.524 14.276
BKSB6F1 both 25.675 8.0549 41.5254 9.8246
BTBRB6F1 both 42.8 8.448 59.424 26.176
BUB6F1 both 39.46 9.3589 57.8765 21.0435
C3B6F1 both 13.1 8.8237 30.4632 0.0
C57BL/6J both 56.7627 4.8595 66.3252 47.2002
C58B6F1 both 5.83 8.8237 23.1932 0.0
CBAB6F1 both 27.7521 7.5347 42.5788 12.9254
CByB6F1 both 30.0167 8.0549 45.867 14.1663
D2B6F1 both 73.1833 8.448 89.8074 56.5593
DDYB6F1 both 44.0512 7.7619 59.325 28.7774
FVBB6F1 both 19.71 8.448 36.334 3.086
IB6F1 both 63.5292 9.0056 81.2504 45.8079
KKB6F1 both 34.445 8.448 51.069 17.821
LGB6F1 both 25.0274 7.7619 40.3012 9.7536
LPB6F1 both 79.785 8.448 96.409 63.161
MAB6F1 both 65.3917 8.0549 81.242 49.5413
MRLB6F1 both 48.5167 8.0549 64.367 32.6663
NODB6F1 both 40.4345 7.7619 55.7083 25.1607
NONB6F1 both 35.8925 9.3589 54.309 17.476
NZBB6F1 both 21.6083 8.0549 37.4587 5.758
NZWB6F1 both 55.2717 8.448 71.8957 38.6476
PLB6F1 both 17.34 8.8237 34.7032 0.0
RIIIB6F1 both 6.5083 8.0549 22.3587 0.0
SEAB6F1 both 31.3283 8.448 47.9524 14.7043
SJLB6F1 both 10.8917 8.0549 26.742 0.0
SMB6F1 both 13.325 8.0549 29.1754 0.0
SWRB6F1 both 8.7833 8.0549 24.6337 0.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA