Phenotype measure:   Palmer6   distance_d3_d2

ID, description, units MPD:59824   distance_d3_d2   total distance traveled on day 3 (methamphetamine) minus total distance traveled on day 2 (saline)   [cm]
methamphetamine study
Data set, strains Palmer6   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Palmer6 - total distance traveled on day 3 (methamphetamine) minus total distance traveled on day 2 (saline)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means13170   cm 13111   cm
Median of the strain means12598   cm 13938   cm
SD of the strain means± 5016 ± 3975
Coefficient of variation (CV)0.381 0.303
Min–max range of strain means4444   –   25121   cm 5602   –   20293   cm
Mean sample size per strain5.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14281.3459 14281.3459 0.0005 0.9821
strain 29 5622766717.0298 193888507.4838 6.8662 < 0.0001
sex:strain 29 1104148328.1409 38074080.2807 1.3483 0.114
Residuals 303 8556090301.3182 28237921.7865


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 4444.0 3459.0   6 1412.0 0.778 899.0, 9615.0 -1.74
129SB6F1 m 10030.0 4504.0   5 2014.0 0.449 4526.0, 17084.0 -0.78
AB6F1 f 14335.0 3741.0   6 1527.0 0.261 8036.0, 18430.0 0.23
AB6F1 m 16142.0 5918.0   7 2237.0 0.367 6757.0, 24421.0 0.76
AKB6F1 f 20386.0 7869.0   6 3213.0 0.386 9932.0, 30096.0 1.44
AKB6F1 m 18944.0 4149.0   5 1855.0 0.219 12479.0, 22533.0 1.47
BKSB6F1 f 6976.0 2953.0   6 1206.0 0.423 3732.0, 11085.0 -1.23
BKSB6F1 m 5602.0 4552.0   6 1858.0 0.813 -1001.0, 12918.0 -1.89
BTBRB6F1 f 6925.0 6594.0   5 2949.0 0.952 92.0, 14683.0 -1.24
BTBRB6F1 m 11332.0 3971.0   6 1621.0 0.35 5313.0, 15587.0 -0.45
BUB6F1 f 11916.0 2543.0   4 1271.0 0.213 8501.0, 14635.0 -0.25
BUB6F1 m 15493.0 3927.0   5 1756.0 0.253 12584.0, 21729.0 0.6
C3B6F1 f 19384.0 6221.0   5 2782.0 0.321 13438.0, 28381.0 1.24
C3B6F1 m 17808.0 3926.0   5 1756.0 0.22 11889.0, 21466.0 1.18
C57BL/6J f 13730.0 5675.0   17 1376.0 0.413 3848.0, 27471.0 0.11
C57BL/6J m 12958.0 6103.0   16 1526.0 0.471 5784.0, 25220.0 -0.04
C58B6F1 f 25121.0 9514.0   5 4255.0 0.379 11277.0, 38105.0 2.38
C58B6F1 m 20293.0 9252.0   5 4138.0 0.456 10620.0, 32181.0 1.81
CBAB6F1 f 9595.0 6637.0   6 2710.0 0.692 3818.0, 18506.0 -0.71
CBAB6F1 m 13910.0 5599.0   8 1980.0 0.403 3687.0, 24048.0 0.2
CByB6F1 f 12428.0 7052.0   6 2879.0 0.567 -1243.0, 18834.0 -0.15
CByB6F1 m 15784.0 4564.0   6 1863.0 0.289 10723.0, 24092.0 0.67
D2B6F1 f 12768.0 5271.0   6 2152.0 0.413 7986.0, 22292.0 -0.08
D2B6F1 m 6773.0 4228.0   5 1891.0 0.624 1904.0, 12073.0 -1.59
DDYB6F1 f 22266.0 11384.0   6 4647.0 0.511 -196.0, 31713.0 1.81
DDYB6F1 m 20117.0 2699.0   7 1020.0 0.134 16629.0, 23216.0 1.76
FVBB6F1 f 10884.0 5667.0   5 2535.0 0.521 4484.0, 19891.0 -0.46
FVBB6F1 m 15866.0 6695.0   6 2733.0 0.422 6656.0, 22615.0 0.69
IB6F1 f 10882.0 4150.0   4 2075.0 0.381 5494.0, 14728.0 -0.46
IB6F1 m 5625.0 3434.0   6 1402.0 0.611 26.0, 10465.0 -1.88
KKB6F1 f 14379.0 1533.0   6 626.0 0.107 12685.0, 16077.0 0.24
KKB6F1 m 13966.0 1483.0   5 663.0 0.106 12185.0, 16191.0 0.22
LGB6F1 f 10810.0 5023.0   6 2051.0 0.465 4433.0, 17475.0 -0.47
LGB6F1 m 9258.0 4514.0   7 1706.0 0.488 1663.0, 16772.0 -0.97
LPB6F1 f 8479.0 7187.0   6 2934.0 0.848 219.0, 21634.0 -0.94
LPB6F1 m 11993.0 3708.0   5 1658.0 0.309 8104.0, 16191.0 -0.28
MAB6F1 f 8040.0 4612.0   6 1883.0 0.574 3587.0, 14957.0 -1.02
MAB6F1 m 10583.0 2734.0   6 1116.0 0.258 5236.0, 12506.0 -0.64
MRLB6F1 f 8765.0 3295.0   6 1345.0 0.376 2311.0, 11757.0 -0.88
MRLB6F1 m 14425.0 4011.0   6 1638.0 0.278 7581.0, 18102.0 0.33
NODB6F1 f 11685.0 6487.0   7 2452.0 0.555 1227.0, 18416.0 -0.3
NODB6F1 m 14434.0 5250.0   6 2143.0 0.364 6048.0, 20379.0 0.33
NONB6F1 f 12867.0 3229.0   5 1444.0 0.251 9702.0, 16457.0 -0.06
NONB6F1 m 13418.0 5416.0   4 2708.0 0.404 5311.0, 16436.0 0.08
NZBB6F1 f 11334.0 6892.0   6 2813.0 0.608 3391.0, 20869.0 -0.37
NZBB6F1 m 14313.0 4104.0   6 1676.0 0.287 9183.0, 21406.0 0.3
NZWB6F1 f 5533.0 2816.0   6 1150.0 0.509 979.0, 8353.0 -1.52
NZWB6F1 m 6120.0 4558.0   5 2038.0 0.745 235.0, 12976.0 -1.76
PLB6F1 f 16003.0 6442.0   5 2881.0 0.403 7114.0, 24659.0 0.56
PLB6F1 m 9072.0 5055.0   5 2261.0 0.557 1370.0, 14425.0 -1.02
RIIIB6F1 f 16499.0 4473.0   6 1826.0 0.271 8171.0, 19991.0 0.66
RIIIB6F1 m 14301.0 2581.0   6 1054.0 0.181 12033.0, 18760.0 0.3
SEAB6F1 f 16576.0 4212.0   6 1720.0 0.254 9916.0, 20367.0 0.68
SEAB6F1 m 11514.0 5205.0   5 2328.0 0.452 6345.0, 20233.0 -0.4
SJLB6F1 f 18425.0 2997.0   6 1224.0 0.163 13503.0, 22899.0 1.05
SJLB6F1 m 15591.0 5839.0   6 2384.0 0.374 7665.0, 23749.0 0.62
SMB6F1 f 18940.0 6579.0   6 2686.0 0.347 11313.0, 30799.0 1.15
SMB6F1 m 14648.0 4676.0   6 1909.0 0.319 11117.0, 22399.0 0.39
SWRB6F1 f 14715.0 5401.0   6 2205.0 0.367 9430.0, 21838.0 0.31
SWRB6F1 m 13016.0 1718.0   5 768.0 0.132 10015.0, 14274.0 -0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 4444.0 2169.4055 8713.0085 174.9915
129SB6F1 m 10029.8 2376.4647 14706.2645 5353.3355
AB6F1 f 14334.8333 2169.4055 18603.8418 10065.8249
AB6F1 m 16142.0 2008.4792 20094.3338 12189.6662
AKB6F1 f 20385.8333 2169.4055 24654.8418 16116.8249
AKB6F1 m 18944.4 2376.4647 23620.8645 14267.9355
BKSB6F1 f 6975.6667 2169.4055 11244.6751 2706.6582
BKSB6F1 m 5601.6667 2169.4055 9870.6751 1332.6582
BTBRB6F1 f 6925.2 2376.4647 11601.6645 2248.7355
BTBRB6F1 m 11332.3333 2169.4055 15601.3418 7063.3249
BUB6F1 f 11915.5 2656.9683 17143.9462 6687.0538
BUB6F1 m 15493.4 2376.4647 20169.8645 10816.9355
C3B6F1 f 19383.8 2376.4647 24060.2645 14707.3355
C3B6F1 m 17808.0 2376.4647 22484.4645 13131.5355
C57BL/6J f 13729.5882 1288.8189 16265.7572 11193.4193
C57BL/6J m 12957.9375 1328.4841 15572.1606 10343.7144
C58B6F1 f 25120.6 2376.4647 29797.0645 20444.1355
C58B6F1 m 20292.6 2376.4647 24969.0645 15616.1355
CBAB6F1 f 9595.0 2169.4055 13864.0085 5325.9915
CBAB6F1 m 13910.375 1878.7603 17607.4448 10213.3052
CByB6F1 f 12428.5 2169.4055 16697.5085 8159.4915
CByB6F1 m 15784.1667 2169.4055 20053.1751 11515.1582
D2B6F1 f 12768.1667 2169.4055 17037.1751 8499.1582
D2B6F1 m 6772.8 2376.4647 11449.2645 2096.3355
DDYB6F1 f 22265.8333 2169.4055 26534.8418 17996.8249
DDYB6F1 m 20117.0 2008.4792 24069.3338 16164.6662
FVBB6F1 f 10884.0 2376.4647 15560.4645 6207.5355
FVBB6F1 m 15866.0 2169.4055 20135.0085 11596.9915
IB6F1 f 10881.5 2656.9683 16109.9462 5653.0538
IB6F1 m 5624.6667 2169.4055 9893.6751 1355.6582
KKB6F1 f 14379.3333 2169.4055 18648.3418 10110.3249
KKB6F1 m 13966.0 2376.4647 18642.4645 9289.5355
LGB6F1 f 10810.1667 2169.4055 15079.1751 6541.1582
LGB6F1 m 9257.8571 2008.4792 13210.191 5305.5233
LPB6F1 f 8479.0 2169.4055 12748.0085 4209.9915
LPB6F1 m 11992.6 2376.4647 16669.0645 7316.1355
MAB6F1 f 8039.6667 2169.4055 12308.6751 3770.6582
MAB6F1 m 10583.3333 2169.4055 14852.3418 6314.3249
MRLB6F1 f 8765.3333 2169.4055 13034.3418 4496.3249
MRLB6F1 m 14424.8333 2169.4055 18693.8418 10155.8249
NODB6F1 f 11685.4286 2008.4792 15637.7624 7733.0947
NODB6F1 m 14434.3333 2169.4055 18703.3418 10165.3249
NONB6F1 f 12866.6 2376.4647 17543.0645 8190.1355
NONB6F1 m 13418.25 2656.9683 18646.6962 8189.8038
NZBB6F1 f 11334.0 2169.4055 15603.0085 7064.9915
NZBB6F1 m 14312.8333 2169.4055 18581.8418 10043.8249
NZWB6F1 f 5532.8333 2169.4055 9801.8418 1263.8249
NZWB6F1 m 6120.0 2376.4647 10796.4645 1443.5355
PLB6F1 f 16003.2 2376.4647 20679.6645 11326.7355
PLB6F1 m 9071.8 2376.4647 13748.2645 4395.3355
RIIIB6F1 f 16499.1667 2169.4055 20768.1751 12230.1582
RIIIB6F1 m 14301.1667 2169.4055 18570.1751 10032.1582
SEAB6F1 f 16576.0 2169.4055 20845.0085 12306.9915
SEAB6F1 m 11513.6 2376.4647 16190.0645 6837.1355
SJLB6F1 f 18425.0 2169.4055 22694.0085 14155.9915
SJLB6F1 m 15591.1667 2169.4055 19860.1751 11322.1582
SMB6F1 f 18939.8333 2169.4055 23208.8418 14670.8249
SMB6F1 m 14647.5 2169.4055 18916.5085 10378.4915
SWRB6F1 f 14715.1667 2169.4055 18984.1751 10446.1582
SWRB6F1 m 13015.6 2376.4647 17692.0645 8339.1355


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 7236.9 1608.8742 10402.8814 4070.9186
AB6F1 both 15238.4167 1478.2007 18147.2556 12329.5777
AKB6F1 both 19665.1167 1608.8742 22831.0981 16499.1353
BKSB6F1 both 6288.6667 1534.0014 9307.3115 3270.0218
BTBRB6F1 both 9128.7667 1608.8742 12294.7481 5962.7853
BUB6F1 both 13704.45 1782.3485 17211.7983 10197.1017
C3B6F1 both 18595.9 1680.4143 21902.6597 15289.1403
C57BL/6J both 13343.7629 925.4626 15164.9105 11522.6152
C58B6F1 both 22706.6 1680.4143 26013.3597 19399.8403
CBAB6F1 both 11752.6875 1434.9269 14576.3712 8929.0038
CByB6F1 both 14106.3333 1534.0014 17124.9782 11087.6885
D2B6F1 both 9770.4833 1608.8742 12936.4647 6604.5019
DDYB6F1 both 21191.4167 1478.2007 24100.2556 18282.5777
FVBB6F1 both 13375.0 1608.8742 16540.9814 10209.0186
IB6F1 both 8253.0833 1715.0657 11628.0308 4878.1358
KKB6F1 both 14172.6667 1608.8742 17338.6481 11006.6853
LGB6F1 both 10034.0119 1478.2007 12942.8508 7125.173
LPB6F1 both 10235.8 1608.8742 13401.7814 7069.8186
MAB6F1 both 9311.5 1534.0014 12330.1448 6292.8552
MRLB6F1 both 11595.0833 1534.0014 14613.7282 8576.4385
NODB6F1 both 13059.881 1478.2007 15968.7199 10151.042
NONB6F1 both 13142.425 1782.3485 16649.7733 9635.0767
NZBB6F1 both 12823.4167 1534.0014 15842.0615 9804.7718
NZWB6F1 both 5826.4167 1608.8742 8992.3981 2660.4353
PLB6F1 both 12537.5 1680.4143 15844.2597 9230.7403
RIIIB6F1 both 15400.1667 1534.0014 18418.8115 12381.5218
SEAB6F1 both 14044.8 1608.8742 17210.7814 10878.8186
SJLB6F1 both 17008.0833 1534.0014 20026.7282 13989.4385
SMB6F1 both 16793.6667 1534.0014 19812.3115 13775.0218
SWRB6F1 both 13865.3833 1608.8742 17031.3647 10699.4019




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA