Project measure / variable:   Palmer6   distance_d2

ID, description, units MPD:59823   distance_d2   total distance traveled on day 2, saline   [cm]  
Data set, strains Palmer6   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer6 - total distance traveled on day 2, saline



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means5149   cm 5089   cm
Median of the strain means4870   cm 4758   cm
SD of the strain means± 1530 ± 1306
Coefficient of variation (CV)0.297 0.257
Min–max range of strain means3003   –   8917   cm 3294   –   8024   cm
Mean sample size per strain5.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14177.8582 14177.8582 0.0059 0.9387
strain 29 583799247.8004 20131008.5448 8.4181 < 0.0001
sex:strain 29 113202834.5527 3903546.0191 1.6323 0.024
Residuals 303 724594607.2598 2391401.3441


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 3003.0 956.0   6 390.0 0.318 1917.0, 4691.0 -1.4
129SB6F1 m 3294.0 1183.0   5 529.0 0.359 2026.0, 4969.0 -1.37
AB6F1 f 4522.0 1514.0   6 618.0 0.335 2862.0, 7205.0 -0.41
AB6F1 m 4242.0 573.0   7 217.0 0.135 3559.0, 5205.0 -0.65
AKB6F1 f 7806.0 2036.0   6 831.0 0.261 5368.0, 11562.0 1.74
AKB6F1 m 6540.0 1729.0   5 773.0 0.264 4724.0, 9414.0 1.11
BKSB6F1 f 3063.0 1435.0   6 586.0 0.468 837.0, 5242.0 -1.36
BKSB6F1 m 3346.0 513.0   6 209.0 0.153 2897.0, 4138.0 -1.33
BTBRB6F1 f 4454.0 1456.0   5 651.0 0.327 2160.0, 5646.0 -0.45
BTBRB6F1 m 4152.0 1709.0   6 698.0 0.412 1892.0, 6402.0 -0.72
BUB6F1 f 5231.0 439.0   4 220.0 0.0839 4606.0, 5627.0 0.05
BUB6F1 m 7188.0 5015.0   5 2243.0 0.698 2123.0, 15300.0 1.61
C3B6F1 f 5098.0 1265.0   5 566.0 0.248 3822.0, 6893.0 -0.03
C3B6F1 m 4851.0 1969.0   5 881.0 0.406 2989.0, 7126.0 -0.18
C57BL/6J f 4398.0 1762.0   17 427.0 0.401 1790.0, 7743.0 -0.49
C57BL/6J m 4777.0 1680.0   16 420.0 0.352 1837.0, 7580.0 -0.24
C58B6F1 f 6820.0 1649.0   5 737.0 0.242 4869.0, 8816.0 1.09
C58B6F1 m 5988.0 791.0   5 354.0 0.132 4999.0, 7070.0 0.69
CBAB6F1 f 5870.0 906.0   6 370.0 0.154 5207.0, 7674.0 0.47
CBAB6F1 m 7161.0 958.0   8 339.0 0.134 6029.0, 8398.0 1.59
CByB6F1 f 4460.0 2031.0   6 829.0 0.455 1874.0, 7321.0 -0.45
CByB6F1 m 6179.0 830.0   6 339.0 0.134 5167.0, 7603.0 0.83
D2B6F1 f 5228.0 995.0   6 406.0 0.19 3866.0, 6595.0 0.05
D2B6F1 m 3988.0 1472.0   5 658.0 0.369 2017.0, 5172.0 -0.84
DDYB6F1 f 3405.0 1986.0   6 811.0 0.583 324.0, 6107.0 -1.14
DDYB6F1 m 3990.0 1088.0   7 411.0 0.273 2660.0, 5860.0 -0.84
FVBB6F1 f 6113.0 2311.0   5 1034.0 0.378 3404.0, 9520.0 0.63
FVBB6F1 m 4740.0 1549.0   6 632.0 0.327 3379.0, 7389.0 -0.27
IB6F1 f 4508.0 1536.0   4 768.0 0.341 2940.0, 6195.0 -0.42
IB6F1 m 4310.0 1131.0   6 462.0 0.262 2429.0, 5635.0 -0.6
KKB6F1 f 3655.0 2036.0   6 831.0 0.557 400.0, 6415.0 -0.98
KKB6F1 m 5290.0 1337.0   5 598.0 0.253 3255.0, 6563.0 0.15
LGB6F1 f 5912.0 790.0   6 322.0 0.134 5234.0, 7079.0 0.5
LGB6F1 m 5616.0 936.0   7 354.0 0.167 3893.0, 6517.0 0.4
LPB6F1 f 3558.0 1608.0   6 656.0 0.452 1005.0, 5369.0 -1.04
LPB6F1 m 3980.0 2120.0   5 948.0 0.533 2520.0, 7665.0 -0.85
MAB6F1 f 5444.0 2123.0   6 867.0 0.39 2807.0, 8637.0 0.19
MAB6F1 m 6438.0 1016.0   6 415.0 0.158 4981.0, 7766.0 1.03
MRLB6F1 f 4642.0 1318.0   6 538.0 0.284 3384.0, 6862.0 -0.33
MRLB6F1 m 4708.0 863.0   6 352.0 0.183 3957.0, 6307.0 -0.29
NODB6F1 f 5288.0 2289.0   7 865.0 0.433 3208.0, 9647.0 0.09
NODB6F1 m 7204.0 999.0   6 408.0 0.139 5853.0, 8133.0 1.62
NONB6F1 f 5506.0 2035.0   5 910.0 0.37 3783.0, 8883.0 0.23
NONB6F1 m 5818.0 1637.0   4 819.0 0.281 4333.0, 7481.0 0.56
NZBB6F1 f 3833.0 1049.0   6 428.0 0.274 2421.0, 4919.0 -0.86
NZBB6F1 m 4029.0 787.0   6 321.0 0.195 3260.0, 5371.0 -0.81
NZWB6F1 f 3598.0 1360.0   6 555.0 0.378 1907.0, 5526.0 -1.01
NZWB6F1 m 3360.0 778.0   5 348.0 0.232 2137.0, 4240.0 -1.32
PLB6F1 f 4006.0 2241.0   5 1002.0 0.56 614.0, 6094.0 -0.75
PLB6F1 m 4240.0 922.0   5 412.0 0.217 2691.0, 5127.0 -0.65
RIIIB6F1 f 7993.0 2355.0   6 961.0 0.295 5146.0, 10930.0 1.86
RIIIB6F1 m 5812.0 1574.0   6 643.0 0.271 4525.0, 8835.0 0.55
SEAB6F1 f 7991.0 982.0   6 401.0 0.123 6655.0, 9336.0 1.86
SEAB6F1 m 5444.0 866.0   5 387.0 0.159 4418.0, 6381.0 0.27
SJLB6F1 f 5626.0 1372.0   6 560.0 0.244 4057.0, 7856.0 0.31
SJLB6F1 m 3517.0 299.0   6 122.0 0.085 3135.0, 3949.0 -1.2
SMB6F1 f 8917.0 907.0   6 370.0 0.102 7735.0, 9872.0 2.46
SMB6F1 m 8024.0 171.0   6 69.7 0.0213 7838.0, 8223.0 2.25
SWRB6F1 f 4527.0 1196.0   6 488.0 0.264 3165.0, 6137.0 -0.41
SWRB6F1 m 4436.0 716.0   5 320.0 0.161 3738.0, 5257.0 -0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 3002.8333 631.3215 4245.1631 1760.5036
129SB6F1 m 3293.8 691.5781 4654.7041 1932.8959
AB6F1 f 4522.5 631.3215 5764.8297 3280.1703
AB6F1 m 4241.8571 584.4902 5392.031 3091.6833
AKB6F1 f 7806.3333 631.3215 9048.6631 6564.0036
AKB6F1 m 6539.6 691.5781 7900.5041 5178.6959
BKSB6F1 f 3063.3333 631.3215 4305.6631 1821.0036
BKSB6F1 m 3346.0 631.3215 4588.3297 2103.6703
BTBRB6F1 f 4454.0 691.5781 5814.9041 3093.0959
BTBRB6F1 m 4152.0 631.3215 5394.3297 2909.6703
BUB6F1 f 5230.75 773.2078 6752.287 3709.213
BUB6F1 m 7188.0 691.5781 8548.9041 5827.0959
C3B6F1 f 5098.2 691.5781 6459.1041 3737.2959
C3B6F1 m 4851.0 691.5781 6211.9041 3490.0959
C57BL/6J f 4397.7059 375.0609 5135.7597 3659.652
C57BL/6J m 4776.6875 386.6039 5537.456 4015.919
C58B6F1 f 6820.4 691.5781 8181.3041 5459.4959
C58B6F1 m 5988.2 691.5781 7349.1041 4627.2959
CBAB6F1 f 5869.8333 631.3215 7112.1631 4627.5036
CBAB6F1 m 7161.0 546.7405 8236.8891 6085.1109
CByB6F1 f 4460.5 631.3215 5702.8297 3218.1703
CByB6F1 m 6178.8333 631.3215 7421.1631 4936.5036
D2B6F1 f 5227.5 631.3215 6469.8297 3985.1703
D2B6F1 m 3988.0 691.5781 5348.9041 2627.0959
DDYB6F1 f 3404.8333 631.3215 4647.1631 2162.5036
DDYB6F1 m 3989.7143 584.4902 5139.8881 2839.5404
FVBB6F1 f 6113.4 691.5781 7474.3041 4752.4959
FVBB6F1 m 4739.8333 631.3215 5982.1631 3497.5036
IB6F1 f 4507.5 773.2078 6029.037 2985.963
IB6F1 m 4310.0 631.3215 5552.3297 3067.6703
KKB6F1 f 3655.0 631.3215 4897.3297 2412.6703
KKB6F1 m 5289.8 691.5781 6650.7041 3928.8959
LGB6F1 f 5912.1667 631.3215 7154.4964 4669.8369
LGB6F1 m 5616.1429 584.4902 6766.3167 4465.969
LPB6F1 f 3558.3333 631.3215 4800.6631 2316.0036
LPB6F1 m 3979.6 691.5781 5340.5041 2618.6959
MAB6F1 f 5443.6667 631.3215 6685.9964 4201.3369
MAB6F1 m 6438.1667 631.3215 7680.4964 5195.8369
MRLB6F1 f 4642.5 631.3215 5884.8297 3400.1703
MRLB6F1 m 4708.3333 631.3215 5950.6631 3466.0036
NODB6F1 f 5288.0 584.4902 6438.1738 4137.8262
NODB6F1 m 7204.5 631.3215 8446.8297 5962.1703
NONB6F1 f 5506.4 691.5781 6867.3041 4145.4959
NONB6F1 m 5818.0 773.2078 7339.537 4296.463
NZBB6F1 f 3833.0 631.3215 5075.3297 2590.6703
NZBB6F1 m 4029.0 631.3215 5271.3297 2786.6703
NZWB6F1 f 3597.6667 631.3215 4839.9964 2355.3369
NZWB6F1 m 3359.8 691.5781 4720.7041 1998.8959
PLB6F1 f 4005.8 691.5781 5366.7041 2644.8959
PLB6F1 m 4240.2 691.5781 5601.1041 2879.2959
RIIIB6F1 f 7993.0 631.3215 9235.3297 6750.6703
RIIIB6F1 m 5812.5 631.3215 7054.8297 4570.1703
SEAB6F1 f 7990.6667 631.3215 9232.9964 6748.3369
SEAB6F1 m 5444.0 691.5781 6804.9041 4083.0959
SJLB6F1 f 5625.8333 631.3215 6868.1631 4383.5036
SJLB6F1 m 3517.3333 631.3215 4759.6631 2275.0036
SMB6F1 f 8917.0 631.3215 10159.3297 7674.6703
SMB6F1 m 8024.3333 631.3215 9266.6631 6782.0036
SWRB6F1 f 4527.3333 631.3215 5769.6631 3285.0036
SWRB6F1 m 4436.2 691.5781 5797.1041 3075.2959


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 3148.3167 468.2006 4069.6531 2226.9803
AB6F1 both 4382.1786 430.1731 5228.6836 3535.6735
AKB6F1 both 7172.9667 468.2006 8094.3031 6251.6303
BKSB6F1 both 3204.6667 446.4117 4083.1265 2326.2069
BTBRB6F1 both 4303.0 468.2006 5224.3364 3381.6636
BUB6F1 both 6209.375 518.6836 7230.053 5188.697
C3B6F1 both 4974.6 489.0196 5936.9045 4012.2955
C57BL/6J both 4587.1967 269.3201 5117.1713 4057.2221
C58B6F1 both 6404.3 489.0196 7366.6045 5441.9955
CBAB6F1 both 6515.4167 417.58 7337.1406 5693.6928
CByB6F1 both 5319.6667 446.4117 6198.1265 4441.2069
D2B6F1 both 4607.75 468.2006 5529.0864 3686.4136
DDYB6F1 both 3697.2738 430.1731 4543.7788 2850.7688
FVBB6F1 both 5426.6167 468.2006 6347.9531 4505.2803
IB6F1 both 4408.75 499.1035 5390.8979 3426.6021
KKB6F1 both 4472.4 468.2006 5393.7364 3551.0636
LGB6F1 both 5764.1548 430.1731 6610.6598 4917.6497
LPB6F1 both 3768.9667 468.2006 4690.3031 2847.6303
MAB6F1 both 5940.9167 446.4117 6819.3765 5062.4569
MRLB6F1 both 4675.4167 446.4117 5553.8765 3796.9569
NODB6F1 both 6246.25 430.1731 7092.755 5399.745
NONB6F1 both 5662.2 518.6836 6682.878 4641.522
NZBB6F1 both 3931.0 446.4117 4809.4598 3052.5402
NZWB6F1 both 3478.7333 468.2006 4400.0697 2557.3969
PLB6F1 both 4123.0 489.0196 5085.3045 3160.6955
RIIIB6F1 both 6902.75 446.4117 7781.2098 6024.2902
SEAB6F1 both 6717.3333 468.2006 7638.6697 5795.9969
SJLB6F1 both 4571.5833 446.4117 5450.0431 3693.1235
SMB6F1 both 8470.6667 446.4117 9349.1265 7592.2069
SWRB6F1 both 4481.7667 468.2006 5403.1031 3560.4303




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA