Phenotype measure:   Palmer6   pct_light

ID, description, units MPD:59811   pct_light   percentage of time spent in light vs dark side of apparatus   [%]
Data set, strains Palmer6   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
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Palmer6 - percentage of time spent in light vs dark side of apparatus



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means38.3   % 40.4   %
Median of the strain means38.4   % 41.6   %
SD of the strain means± 4.15 ± 5.15
Coefficient of variation (CV)0.108 0.127
Min–max range of strain means30.8   –   48.2   % 27.7   –   49.3   %
Mean sample size per strain5.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 348.0545 348.0545 3.6491 0.057
strain 29 3928.6081 135.4692 1.4203 0.079
sex:strain 29 3463.186 119.4202 1.252 0.1797
Residuals 303 28900.7964 95.3822


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 41.8 11.7   6 4.76 0.279 28.7, 63.4 0.85
129SB6F1 m 44.4 8.91   5 3.98 0.201 34.1, 57.5 0.77
AB6F1 f 48.2 27.0   6 11.0 0.56 24.3, 99.9 2.39
AB6F1 m 38.1 12.2   7 4.61 0.321 24.4, 61.9 -0.45
AKB6F1 f 35.7 9.58   6 3.91 0.268 25.2, 48.9 -0.62
AKB6F1 m 32.4 12.7   5 5.69 0.393 14.6, 46.7 -1.56
BKSB6F1 f 38.8 8.17   6 3.34 0.211 30.3, 51.1 0.13
BKSB6F1 m 41.8 3.09   5 1.38 0.0739 38.5, 45.2 0.27
BTBRB6F1 f 32.8 7.78   5 3.48 0.237 20.0, 40.0 -1.32
BTBRB6F1 m 39.8 7.34   6 3.0 0.185 27.7, 47.3 -0.12
BUB6F1 f 30.8 9.52   4 4.76 0.309 18.5, 41.6 -1.8
BUB6F1 m 42.7 6.33   5 2.83 0.148 34.9, 50.8 0.44
C3B6F1 f 35.4 12.1   5 5.4 0.341 16.0, 48.3 -0.69
C3B6F1 m 38.7 7.56   5 3.38 0.195 32.2, 50.7 -0.34
C57BL/6J f 40.2 10.6   17 2.56 0.263 4.2, 52.4 0.46
C57BL/6J m 38.8 8.54   16 2.13 0.22 25.6, 53.4 -0.32
C58B6F1 f 37.1 2.9   5 1.3 0.0784 32.5, 39.6 -0.28
C58B6F1 m 44.5 8.4   5 3.76 0.189 33.8, 54.6 0.79
CBAB6F1 f 39.7 9.05   6 3.7 0.228 27.0, 50.0 0.34
CBAB6F1 m 45.7 4.09   8 1.45 0.0894 38.1, 51.3 1.02
CByB6F1 f 33.8 13.2   6 5.4 0.392 19.5, 54.9 -1.08
CByB6F1 m 32.5 2.67   6 1.09 0.0822 29.0, 36.7 -1.54
D2B6F1 f 43.3 8.95   6 3.65 0.207 28.8, 55.3 1.21
D2B6F1 m 32.7 10.9   5 4.88 0.334 15.4, 43.6 -1.5
DDYB6F1 f 41.0 6.56   6 2.68 0.16 29.8, 48.9 0.66
DDYB6F1 m 49.3 3.83   7 1.45 0.0777 43.0, 52.4 1.72
FVBB6F1 f 41.8 2.46   5 1.1 0.0588 38.0, 44.8 0.85
FVBB6F1 m 36.2 2.09   6 0.853 0.0578 33.4, 38.9 -0.82
IB6F1 f 39.7 16.9   4 8.44 0.426 14.4, 49.6 0.34
IB6F1 m 27.7 10.3   6 4.22 0.373 17.9, 41.8 -2.47
KKB6F1 f 38.6 7.03   6 2.87 0.182 27.4, 44.9 0.08
KKB6F1 m 38.6 6.39   5 2.86 0.165 32.3, 46.2 -0.35
LGB6F1 f 38.1 21.6   6 8.82 0.567 8.7, 68.9 -0.04
LGB6F1 m 43.5 12.9   7 4.89 0.297 27.2, 62.2 0.6
LPB6F1 f 43.7 7.32   6 2.99 0.167 34.7, 53.7 1.31
LPB6F1 m 43.9 3.78   5 1.69 0.0861 37.9, 47.6 0.67
MAB6F1 f 36.3 8.68   6 3.54 0.239 26.7, 49.0 -0.48
MAB6F1 m 43.4 3.36   6 1.37 0.0776 38.4, 48.6 0.58
MRLB6F1 f 33.2 12.0   6 4.89 0.361 9.0, 40.3 -1.22
MRLB6F1 m 32.2 16.4   6 6.69 0.508 9.2, 51.4 -1.6
NODB6F1 f 33.7 11.2   7 4.23 0.332 14.7, 44.7 -1.1
NODB6F1 m 42.0 11.1   6 4.52 0.264 22.7, 51.5 0.31
NONB6F1 f 43.5 10.1   5 4.5 0.231 26.2, 51.2 1.26
NONB6F1 m 41.5 7.55   4 3.77 0.182 33.6, 49.9 0.21
NZBB6F1 f 33.9 4.85   6 1.98 0.143 25.9, 40.7 -1.05
NZBB6F1 m 46.9 10.9   6 4.44 0.231 28.7, 62.3 1.26
NZWB6F1 f 35.9 8.21   6 3.35 0.229 26.1, 45.8 -0.57
NZWB6F1 m 37.1 7.09   5 3.17 0.191 28.7, 44.8 -0.65
PLB6F1 f 32.3 4.93   5 2.21 0.153 26.8, 40.1 -1.44
PLB6F1 m 46.1 3.04   5 1.36 0.066 41.2, 48.9 1.1
RIIIB6F1 f 42.6 4.93   6 2.01 0.116 36.6, 50.7 1.04
RIIIB6F1 m 39.8 4.67   6 1.91 0.117 33.1, 45.2 -0.12
SEAB6F1 f 38.6 5.74   6 2.34 0.149 29.1, 46.3 0.08
SEAB6F1 m 42.5 10.4   5 4.63 0.244 31.5, 59.2 0.4
SJLB6F1 f 37.4 11.0   6 4.48 0.293 18.4, 51.9 -0.21
SJLB6F1 m 43.7 11.8   6 4.81 0.27 27.5, 61.5 0.64
SMB6F1 f 37.2 7.91   6 3.23 0.213 27.7, 49.8 -0.26
SMB6F1 m 39.6 7.51   6 3.07 0.19 30.7, 53.2 -0.16
SWRB6F1 f 43.2 5.09   6 2.08 0.118 35.4, 49.2 1.19
SWRB6F1 m 46.7 5.59   6 2.28 0.12 35.7, 50.9 1.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 41.85 3.9871 49.6959 34.0041
129SB6F1 m 44.4 4.3677 52.9948 35.8052
AB6F1 f 48.1833 3.9871 56.0293 40.3374
AB6F1 m 38.0714 3.6913 45.3353 30.8075
AKB6F1 f 35.6833 3.9871 43.5293 27.8374
AKB6F1 m 32.4 4.3677 40.9948 23.8052
BKSB6F1 f 38.7667 3.9871 46.6126 30.9207
BKSB6F1 m 41.78 4.3677 50.3748 33.1852
BTBRB6F1 f 32.8 4.3677 41.3948 24.2052
BTBRB6F1 m 39.7667 3.9871 47.6126 31.9207
BUB6F1 f 30.825 4.8832 40.4343 21.2157
BUB6F1 m 42.68 4.3677 51.2748 34.0852
C3B6F1 f 35.4 4.3677 43.9948 26.8052
C3B6F1 m 38.72 4.3677 47.3148 30.1252
C57BL/6J f 40.2235 2.3687 44.8847 35.5624
C57BL/6J m 38.775 2.4416 43.5796 33.9704
C58B6F1 f 37.06 4.3677 45.6548 28.4652
C58B6F1 m 44.5 4.3677 53.0948 35.9052
CBAB6F1 f 39.6667 3.9871 47.5126 31.8207
CBAB6F1 m 45.725 3.4529 52.5198 38.9302
CByB6F1 f 33.75 3.9871 41.5959 25.9041
CByB6F1 m 32.4667 3.9871 40.3126 24.6207
D2B6F1 f 43.2833 3.9871 51.1293 35.4374
D2B6F1 m 32.66 4.3677 41.2548 24.0652
DDYB6F1 f 41.0333 3.9871 48.8793 33.1874
DDYB6F1 m 49.2714 3.6913 56.5353 42.0075
FVBB6F1 f 41.78 4.3677 50.3748 33.1852
FVBB6F1 m 36.1667 3.9871 44.0126 28.3207
IB6F1 f 39.675 4.8832 49.2843 30.0657
IB6F1 m 27.7 3.9871 35.5459 19.8541
KKB6F1 f 38.5667 3.9871 46.4126 30.7207
KKB6F1 m 38.62 4.3677 47.2148 30.0252
LGB6F1 f 38.0833 3.9871 45.9293 30.2374
LGB6F1 m 43.4857 3.6913 50.7496 36.2218
LPB6F1 f 43.7167 3.9871 51.5626 35.8707
LPB6F1 m 43.88 4.3677 52.4748 35.2852
MAB6F1 f 36.3167 3.9871 44.1626 28.4707
MAB6F1 m 43.35 3.9871 51.1959 35.5041
MRLB6F1 f 33.1667 3.9871 41.0126 25.3207
MRLB6F1 m 32.25 3.9871 40.0959 24.4041
NODB6F1 f 33.7286 3.6913 40.9925 26.4647
NODB6F1 m 42.0 3.9871 49.8459 34.1541
NONB6F1 f 43.54 4.3677 52.1348 34.9452
NONB6F1 m 41.55 4.8832 51.1593 31.9407
NZBB6F1 f 33.9333 3.9871 41.7793 26.0874
NZBB6F1 m 46.95 3.9871 54.7959 39.1041
NZWB6F1 f 35.9 3.9871 43.7459 28.0541
NZWB6F1 m 37.1 4.3677 45.6948 28.5052
PLB6F1 f 32.26 4.3677 40.8548 23.6652
PLB6F1 m 46.06 4.3677 54.6548 37.4652
RIIIB6F1 f 42.5833 3.9871 50.4293 34.7374
RIIIB6F1 m 39.8333 3.9871 47.6793 31.9874
SEAB6F1 f 38.6333 3.9871 46.4793 30.7874
SEAB6F1 m 42.52 4.3677 51.1148 33.9252
SJLB6F1 f 37.4 3.9871 45.2459 29.5541
SJLB6F1 m 43.6667 3.9871 51.5126 35.8207
SMB6F1 f 37.1833 3.9871 45.0293 29.3374
SMB6F1 m 39.6 3.9871 47.4459 31.7541
SWRB6F1 f 43.2333 3.9871 51.0793 35.3874
SWRB6F1 m 46.7333 3.9871 54.5793 38.8874


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 43.125 2.9569 48.9437 37.3063
AB6F1 both 43.1274 2.7168 48.4735 37.7813
AKB6F1 both 34.0417 2.9569 39.8604 28.223
BKSB6F1 both 40.2733 2.9569 46.092 34.4546
BTBRB6F1 both 36.2833 2.9569 42.102 30.4646
BUB6F1 both 36.7525 3.2757 43.1986 30.3064
C3B6F1 both 37.06 3.0884 43.1374 30.9826
C57BL/6J both 39.4993 1.7009 42.8463 36.1522
C58B6F1 both 40.78 3.0884 46.8574 34.7026
CBAB6F1 both 42.6958 2.6372 47.8854 37.5062
CByB6F1 both 33.1083 2.8193 38.6562 27.5604
D2B6F1 both 37.9717 2.9569 43.7904 32.153
DDYB6F1 both 45.1524 2.7168 50.4985 39.8063
FVBB6F1 both 38.9733 2.9569 44.792 33.1546
IB6F1 both 33.6875 3.1521 39.8902 27.4848
KKB6F1 both 38.5933 2.9569 44.412 32.7746
LGB6F1 both 40.7845 2.7168 46.1306 35.4384
LPB6F1 both 43.7983 2.9569 49.617 37.9796
MAB6F1 both 39.8333 2.8193 45.3812 34.2854
MRLB6F1 both 32.7083 2.8193 38.2562 27.1604
NODB6F1 both 37.8643 2.7168 43.2104 32.5182
NONB6F1 both 42.545 3.2757 48.9911 36.0989
NZBB6F1 both 40.4417 2.8193 45.9896 34.8938
NZWB6F1 both 36.5 2.9569 42.3187 30.6813
PLB6F1 both 39.16 3.0884 45.2374 33.0826
RIIIB6F1 both 41.2083 2.8193 46.7562 35.6604
SEAB6F1 both 40.5767 2.9569 46.3954 34.758
SJLB6F1 both 40.5333 2.8193 46.0812 34.9854
SMB6F1 both 38.3917 2.8193 43.9396 32.8438
SWRB6F1 both 44.9833 2.8193 50.5312 39.4354




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA