Phenotype measure:   Palmer5   ASR

ID, description, units MPD:59731   ASR   acoustic startle response (ASR) evoked by 120 dB sound pressure level   [amplitude]
Data set, strains Palmer5   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure acoustic startle test
Ontology mappings

  STRAIN COMPARISON PLOT
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Palmer5 - acoustic startle response (ASR) evoked by 120 dB sound pressure level



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means41.3   amplitude 55.2   amplitude
Median of the strain means30.7   amplitude 49.0   amplitude
SD of the strain means± 25.8 ± 34.8
Coefficient of variation (CV)0.623 0.629
Min–max range of strain means11.0   –   84.0   amplitude 10.6   –   118   amplitude
Mean sample size per strain5.0   mice 5.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23943.6805 23943.6805 39.747 < 0.0001
strain 29 255903.7741 8824.2681 14.6485 < 0.0001
sex:strain 29 16426.3749 566.4267 0.9403 0.5581
Residuals 246 148190.9174 602.4021


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 75.4 34.9   6 14.2 0.463 33.2, 130.0 1.32
129SB6F1 m 74.2 45.0   5 20.1 0.606 40.0, 151.0 0.55
AB6F1 f 19.3 3.32   3 1.92 0.172 17.2, 23.1 -0.86
AB6F1 m 26.2 8.76   4 4.38 0.335 17.0, 34.9 -0.84
AKB6F1 f 16.8 4.92   4 2.46 0.294 11.9, 22.1 -0.95
AKB6F1 m 15.0 0.424   2   0.3 0.0283 14.7, 15.3 -1.16
BKSB6F1 f 26.4 15.2   5 6.78 0.573 10.9, 51.2 -0.58
BKSB6F1 m 38.8 17.9   6 7.32 0.462 19.0, 63.6 -0.47
BTBRB6F1 f 51.3 9.21   4 4.6 0.179 37.7, 58.0 0.39
BTBRB6F1 m 81.9 25.5   4 12.8 0.312 51.0, 112.0 0.77
BUB6F1 f 27.6 9.11   7 3.44 0.33 13.6, 39.3 -0.53
BUB6F1 m 23.8 10.6   5 4.72 0.445 12.1, 38.6 -0.9
C3B6F1 f 45.8 19.8   4 9.92 0.433 26.9, 73.3 0.17
C3B6F1 m 65.7 22.6   4 11.3 0.344 39.9, 94.2 0.3
C57BL/6J f 30.8 15.0   8 5.3 0.485 16.2, 56.3 -0.41
C57BL/6J m 51.3 19.4   9 6.48 0.379 20.7, 72.8 -0.11
C57LB6F1 f 24.7 10.7   7 4.05 0.433 10.6, 42.5 -0.65
C57LB6F1 m 39.2 33.5   5 15.0 0.855 9.1, 91.2 -0.46
C58B6F1 f 11.8 6.69   6 2.73 0.567 6.3, 24.8 -1.15
C58B6F1 m 10.6 2.57   3 1.48 0.243 8.6, 13.5 -1.28
CBAB6F1 f 77.4 10.8   5 4.84 0.14 61.5, 89.7 1.4
CBAB6F1 m 75.3 19.2   4 9.61 0.255 53.0, 95.4 0.58
CByB6F1 f 12.2 2.73   4 1.37 0.224 9.0, 14.6 -1.13
CByB6F1 m 38.0 25.4   4 12.7 0.669 11.5, 72.0 -0.5
D2B6F1 f 18.5 4.41   5 1.97 0.238 13.5, 23.7 -0.89
D2B6F1 m 19.0 9.83   5 4.4 0.518 8.2, 32.1 -1.04
DDYB6F1 f 65.6 51.2   4 25.6 0.781 28.5, 138.0 0.94
DDYB6F1 m 118.0 63.9   5 28.6 0.542 52.8, 188.0 1.81
FVBB6F1 f 79.0 25.0   5 11.2 0.316 51.5, 114.0 1.46
FVBB6F1 m 71.1 35.1   7 13.3 0.493 26.9, 132.0 0.46
IB6F1 f 75.7 17.6   6 7.17 0.232 48.6, 91.0 1.33
IB6F1 m 105.0 29.6   6 12.1 0.283 52.1, 132.0 1.43
KKB6F1 f 69.7 35.6   4 17.8 0.511 33.1, 115.0 1.1
KKB6F1 m 117.0 52.0   5 23.3 0.443 71.8, 207.0 1.78
LPB6F1 f 11.0 7.3   3 4.21 0.664 6.2, 19.4 -1.18
LPB6F1 m 14.6 6.47   5 2.89 0.444 7.0, 24.4 -1.17
MAB6F1 f 11.8 4.08   6 1.67 0.346 5.2, 16.3 -1.15
MAB6F1 m 19.3 12.7   5 5.66 0.658 8.6, 39.8 -1.03
MRLB6F1 f 49.0 19.7   7 7.44 0.402 25.0, 83.7 0.3
MRLB6F1 m 52.5 16.9   5 7.56 0.322 30.0, 77.2 -0.08
NODB6F1 f 16.7 7.71   5 3.45 0.461 10.6, 27.0 -0.96
NODB6F1 m 18.1 19.1   6 7.79 1.05 6.3, 55.7 -1.07
NONB6F1 f 37.7 21.0   4 10.5 0.557 12.1, 62.5 -0.14
NONB6F1 m 64.3 29.1   5 13.0 0.453 29.8, 101.0 0.26
NZBB6F1 f 30.6 16.3   5 7.28 0.532 11.2, 55.6 -0.42
NZBB6F1 m 25.3 9.93   4 4.96 0.392 12.0, 35.9 -0.86
NZWB6F1 f 77.3 24.6   4 12.3 0.318 46.5, 103.0 1.4
NZWB6F1 m 108.0 21.9   6 8.94 0.202 81.5, 135.0 1.52
PLB6F1 f 13.9 3.14   5 1.4 0.226 10.1, 18.8 -1.07
PLB6F1 m 25.7 10.9   6 4.47 0.427 13.5, 42.3 -0.85
RIIIB6F1 f 84.0 30.5   5 13.6 0.363 51.4, 124.0 1.66
RIIIB6F1 m 109.0 47.7   7 18.0 0.436 47.3, 170.0 1.55
SEAB6F1 f 27.2 9.13   9 3.04 0.336 12.3, 43.0 -0.55
SEAB6F1 m 40.3 16.1   7 6.07 0.399 22.5, 59.4 -0.43
SJLB6F1 f 27.0 9.01   6 3.68 0.334 19.3, 38.9 -0.56
SJLB6F1 m 47.3 14.1   4 7.05 0.298 27.0, 59.7 -0.23
SMB6F1 f 82.3 36.6   3 21.1 0.445 40.5, 109.0 1.59
SMB6F1 m 112.0 49.5   6 20.2 0.441 59.7, 196.0 1.63
SWRB6F1 f 43.6 15.7   4 7.86 0.36 30.0, 64.8 0.09
SWRB6F1 m 50.7 31.4   4 15.7 0.62 10.7, 84.2 -0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 75.3833 10.02 95.1193 55.6474
129SB6F1 m 74.24 10.9764 95.8596 52.6204
AB6F1 f 19.2667 14.1704 47.1775 0.0
AB6F1 m 26.175 12.2719 50.3465 2.0035
AKB6F1 f 16.75 12.2719 40.9215 0.0
AKB6F1 m 15.0 17.3551 49.1836 0.0
BKSB6F1 f 26.44 10.9764 48.0596 4.8204
BKSB6F1 m 38.75 10.02 58.4859 19.0141
BTBRB6F1 f 51.325 12.2719 75.4965 27.1535
BTBRB6F1 m 81.9 12.2719 106.0715 57.7285
BUB6F1 f 27.5857 9.2767 45.8576 9.3138
BUB6F1 m 23.76 10.9764 45.3796 2.1404
C3B6F1 f 45.8 12.2719 69.9715 21.6285
C3B6F1 m 65.675 12.2719 89.8465 41.5035
C57BL/6J f 30.85 8.6776 47.9418 13.7582
C57BL/6J m 51.3 8.1813 67.4143 35.1857
C57LB6F1 f 24.7286 9.2767 43.0005 6.4567
C57LB6F1 m 39.2 10.9764 60.8196 17.5804
C58B6F1 f 11.8 10.02 31.5359 0.0
C58B6F1 m 10.6 14.1704 38.5108 0.0
CBAB6F1 f 77.4 10.9764 99.0196 55.7804
CBAB6F1 m 75.3 12.2719 99.4715 51.1285
CByB6F1 f 12.175 12.2719 36.3465 0.0
CByB6F1 m 38.025 12.2719 62.1965 13.8535
D2B6F1 f 18.5 10.9764 40.1196 0.0
D2B6F1 m 18.98 10.9764 40.5996 0.0
DDYB6F1 f 65.6 12.2719 89.7715 41.4285
DDYB6F1 m 117.88 10.9764 139.4996 96.2604
FVBB6F1 f 78.96 10.9764 100.5796 57.3404
FVBB6F1 m 71.1286 9.2767 89.4005 52.8567
IB6F1 f 75.6833 10.02 95.4193 55.9474
IB6F1 m 104.6833 10.02 124.4193 84.9474
KKB6F1 f 69.7 12.2719 93.8715 45.5285
KKB6F1 m 117.42 10.9764 139.0396 95.8004
LPB6F1 f 11.0 14.1704 38.9108 0.0
LPB6F1 m 14.56 10.9764 36.1796 0.0
MAB6F1 f 11.7833 10.02 31.5193 0.0
MAB6F1 m 19.26 10.9764 40.8796 0.0
MRLB6F1 f 48.9571 9.2767 67.2291 30.6852
MRLB6F1 m 52.5 10.9764 74.1196 30.8804
NODB6F1 f 16.72 10.9764 38.3396 0.0
NODB6F1 m 18.1333 10.02 37.8693 0.0
NONB6F1 f 37.7 12.2719 61.8715 13.5285
NONB6F1 m 64.32 10.9764 85.9396 42.7004
NZBB6F1 f 30.62 10.9764 52.2396 9.0004
NZBB6F1 m 25.325 12.2719 49.4965 1.1535
NZWB6F1 f 77.275 12.2719 101.4465 53.1035
NZWB6F1 m 108.2333 10.02 127.9693 88.4974
PLB6F1 f 13.9 10.9764 35.5196 0.0
PLB6F1 m 25.65 10.02 45.3859 5.9141
RIIIB6F1 f 83.98 10.9764 105.5996 62.3604
RIIIB6F1 m 109.3714 9.2767 127.6433 91.0995
SEAB6F1 f 27.1556 8.1813 43.2699 11.0412
SEAB6F1 m 40.2857 9.2767 58.5576 22.0138
SJLB6F1 f 26.9833 10.02 46.7193 7.2474
SJLB6F1 m 47.275 12.2719 71.4465 23.1035
SMB6F1 f 82.2667 14.1704 110.1775 54.3558
SMB6F1 m 112.1333 10.02 131.8693 92.3974
SWRB6F1 f 43.625 12.2719 67.7965 19.4535
SWRB6F1 m 50.725 12.2719 74.8965 26.5535


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 74.8117 7.431 89.4482 60.1751
AB6F1 both 22.7208 9.3728 41.1821 4.2596
AKB6F1 both 15.875 10.6278 36.8081 0.0
BKSB6F1 both 32.595 7.431 47.2316 17.9584
BTBRB6F1 both 66.6125 8.6776 83.7043 49.5207
BUB6F1 both 25.6729 7.1857 39.8262 11.5195
C3B6F1 both 55.7375 8.6776 72.8293 38.6457
C57BL/6J both 41.075 5.9631 52.8202 29.3298
C57LB6F1 both 31.9643 7.1857 46.1177 17.8109
C58B6F1 both 11.2 8.6776 28.2918 0.0
CBAB6F1 both 76.35 8.2323 92.5647 60.1353
CByB6F1 both 25.1 8.6776 42.1918 8.0082
D2B6F1 both 18.74 7.7615 34.0274 3.4526
DDYB6F1 both 91.74 8.2323 107.9547 75.5253
FVBB6F1 both 75.0443 7.1857 89.1977 60.8909
IB6F1 both 90.1833 7.0852 104.1387 76.2279
KKB6F1 both 93.56 8.2323 109.7747 77.3453
LPB6F1 both 12.78 8.9622 30.4324 0.0
MAB6F1 both 15.5217 7.431 30.1582 0.8851
MRLB6F1 both 50.7286 7.1857 64.8819 36.5752
NODB6F1 both 17.4267 7.431 32.0632 2.7901
NONB6F1 both 51.01 8.2323 67.2247 34.7953
NZBB6F1 both 27.9725 8.2323 44.1872 11.7578
NZWB6F1 both 92.7542 7.9215 108.3568 77.1515
PLB6F1 both 19.775 7.431 34.4116 5.1384
RIIIB6F1 both 96.6757 7.1857 110.8291 82.5223
SEAB6F1 both 33.7206 6.1845 45.9019 21.5394
SJLB6F1 both 37.1292 7.9215 52.7318 21.5265
SMB6F1 both 97.2 8.6776 114.2918 80.1082
SWRB6F1 both 47.175 8.6776 64.2668 30.0832




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA