Phenotype measure:   Palmer5   d3_tone


  STRAIN COMPARISON PLOT
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Palmer5 - percentage of time freezing to tone on day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means49.3   % 40.7   %
Median of the strain means49.5   % 38.4   %
SD of the strain means± 18.0 ± 19.3
Coefficient of variation (CV)0.365 0.474
Min–max range of strain means5.75   –   79.2   % 8.33   –   88.0   %
Mean sample size per strain5.0   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3543.5408 3543.5408 7.8701 0.0054
strain 29 93510.492 3224.4997 7.1615 < 0.0001
sex:strain 29 11952.3507 412.15 0.9154 0.5951
Residuals 244 109862.2756 450.2552


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 76.8 23.0   6 9.4 0.3 35.8, 100.0 1.53
129SB6F1 m 53.1 16.4   5 7.32 0.309 29.0, 74.6 0.64
AB6F1 f 64.5 45.4   3 26.2 0.705 12.1, 93.3 0.85
AB6F1 m 51.3 16.3   4 8.16 0.318 35.7, 66.1 0.55
AKB6F1 f 42.6 19.5   4 9.75 0.457 18.8, 64.7 -0.37
AKB6F1 m 20.0 26.5   2   18.8 1.32 1.3, 38.8 -1.07
BKSB6F1 f 75.1 6.17   5 2.76 0.0822 67.4, 83.9 1.44
BKSB6F1 m 65.2 13.3   6 5.45 0.204 47.3, 80.8 1.27
BTBRB6F1 f 61.4 10.9   4 5.47 0.178 50.0, 73.2 0.67
BTBRB6F1 m 56.3 18.1   4 9.03 0.321 33.0, 76.5 0.81
BUB6F1 f 73.3 24.5   7 9.26 0.334 38.8, 97.3 1.34
BUB6F1 m 88.0 5.27   5 2.36 0.0599 81.7, 94.2 2.45
C3B6F1 f 51.1 31.0   4 15.5 0.606 25.5, 92.9 0.1
C3B6F1 m 38.2 28.1   4 14.0 0.736 5.4, 73.6 -0.13
C57BL/6J f 27.6 18.3   8 6.47 0.663 5.0, 58.9 -1.21
C57BL/6J m 34.1 18.3   9 6.1 0.537 4.5, 59.8 -0.34
C57LB6F1 f 44.3 14.4   7 5.45 0.326 21.4, 66.5 -0.28
C57LB6F1 m 35.7 23.2   5 10.4 0.651 12.5, 61.6 -0.26
C58B6F1 f 24.3 25.2   5 11.2 1.04 4.5, 66.8 -1.39
C58B6F1 m 24.3 28.3   2   20.0 1.16 4.3, 44.3 -0.85
CBAB6F1 f 32.6 34.5   5 15.4 1.06 2.2, 86.1 -0.93
CBAB6F1 m 8.33 7.65   4 3.83 0.919 1.3, 18.8 -1.68
CByB6F1 f 34.1 8.78   4 4.39 0.258 25.4, 42.6 -0.84
CByB6F1 m 13.6 7.57   5 3.39 0.558 2.7, 21.4 -1.41
D2B6F1 f 52.3 17.7   5 7.9 0.338 28.4, 74.3 0.17
D2B6F1 m 32.4 14.7   5 6.59 0.454 19.6, 56.7 -0.43
DDYB6F1 f 50.1 24.0   4 12.0 0.479 16.9, 73.5 0.05
DDYB6F1 m 67.5 26.1   5 11.7 0.388 38.7, 96.8 1.39
FVBB6F1 f 60.1 25.4   5 11.3 0.422 20.4, 88.8 0.6
FVBB6F1 m 44.3 21.7   6 8.84 0.489 19.6, 68.8 0.19
IB6F1 f 45.1 25.5   6 10.4 0.565 5.8, 79.0 -0.23
IB6F1 m 26.0 30.1   6 12.3 1.16 4.9, 77.2 -0.76
KKB6F1 f 79.2 15.8   4 7.88 0.199 58.5, 96.9 1.66
KKB6F1 m 55.2 13.6   5 6.07 0.246 43.8, 78.1 0.75
LPB6F1 f 54.9 16.6   3 9.59 0.303 40.0, 72.8 0.31
LPB6F1 m 67.3 18.3   6 7.46 0.272 33.0, 84.8 1.38
MAB6F1 f 60.8 17.4   6 7.12 0.287 43.2, 90.6 0.64
MAB6F1 m 56.6 23.2   5 10.4 0.409 25.0, 81.3 0.82
MRLB6F1 f 34.7 19.9   7 7.5 0.572 12.1, 73.7 -0.81
MRLB6F1 m 31.7 17.6   5 7.86 0.554 16.9, 58.0 -0.47
NODB6F1 f 40.8 22.3   5 9.99 0.548 20.1, 71.9 -0.47
NODB6F1 m 32.5 13.3   6 5.44 0.41 11.6, 45.1 -0.43
NONB6F1 f 34.3 34.6   4 17.3 1.01 10.8, 85.7 -0.83
NONB6F1 m 29.8 19.2   5 8.57 0.644 10.3, 50.9 -0.57
NZBB6F1 f 70.5 16.1   5 7.22 0.229 47.3, 86.2 1.18
NZBB6F1 m 71.4 27.6   4 13.8 0.387 30.8, 89.3 1.59
NZWB6F1 f 69.0 33.8   4 16.9 0.491 20.4, 95.5 1.1
NZWB6F1 m 39.0 27.9   6 11.4 0.716 4.5, 81.5 -0.09
PLB6F1 f 24.7 19.1   5 8.56 0.775 4.5, 52.0 -1.37
PLB6F1 m 24.8 23.2   6 9.48 0.936 2.7, 60.3 -0.82
RIIIB6F1 f 58.2 21.5   5 9.61 0.369 31.7, 87.1 0.5
RIIIB6F1 m 38.5 17.4   8 6.16 0.453 0.9, 57.4 -0.11
SEAB6F1 f 5.75 4.55   8 1.61 0.791 0.5, 12.5 -2.42
SEAB6F1 m 10.5 11.5   5 5.15 1.09 1.3, 27.7 -1.57
SJLB6F1 f 44.9 24.0   6 9.8 0.534 14.3, 76.3 -0.24
SJLB6F1 m 42.1 28.8   4 14.4 0.685 10.7, 78.8 0.07
SMB6F1 f 48.8 27.3   4 13.7 0.56 12.1, 74.0 -0.03
SMB6F1 m 22.9 19.0   6 7.77 0.832 6.7, 50.5 -0.92
SWRB6F1 f 36.3 27.2   4 13.6 0.749 11.7, 64.7 -0.72
SWRB6F1 m 40.7 22.9   4 11.5 0.563 6.7, 56.4 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 76.8167 8.6627 93.8799 59.7534
129SB6F1 m 53.08 9.4895 71.7718 34.3882
AB6F1 f 64.4667 12.2509 88.5977 40.3356
AB6F1 m 51.325 10.6096 72.2231 30.4269
AKB6F1 f 42.65 10.6096 63.5481 21.7519
AKB6F1 m 20.05 15.0043 49.6044 0.0
BKSB6F1 f 75.08 9.4895 93.7718 56.3882
BKSB6F1 m 65.25 8.6627 82.3132 48.1868
BTBRB6F1 f 61.4 10.6096 82.2981 40.5019
BTBRB6F1 m 56.3 10.6096 77.1981 35.4019
BUB6F1 f 73.2714 8.0201 89.0689 57.4739
BUB6F1 m 88.04 9.4895 106.7318 69.3482
C3B6F1 f 51.1 10.6096 71.9981 30.2019
C3B6F1 m 38.175 10.6096 59.0731 17.2769
C57BL/6J f 27.6125 7.5021 42.3897 12.8353
C57BL/6J m 34.1222 7.0731 48.0543 20.1902
C57LB6F1 f 44.2714 8.0201 60.0689 28.4739
C57LB6F1 m 35.68 9.4895 54.3718 16.9882
C58B6F1 f 24.26 9.4895 42.9518 5.5682
C58B6F1 m 24.3 15.0043 53.8544 0.0
CBAB6F1 f 32.62 9.4895 51.3118 13.9282
CBAB6F1 m 8.325 10.6096 29.2231 0.0
CByB6F1 f 34.075 10.6096 54.9731 13.1769
CByB6F1 m 13.56 9.4895 32.2518 0.0
D2B6F1 f 52.34 9.4895 71.0318 33.6482
D2B6F1 m 32.42 9.4895 51.1118 13.7282
DDYB6F1 f 50.15 10.6096 71.0481 29.2519
DDYB6F1 m 67.48 9.4895 86.1718 48.7882
FVBB6F1 f 60.14 9.4895 78.8318 41.4482
FVBB6F1 m 44.3167 8.6627 61.3799 27.2534
IB6F1 f 45.0667 8.6627 62.1299 28.0034
IB6F1 m 25.9667 8.6627 43.0299 8.9034
KKB6F1 f 79.15 10.6096 100.0481 58.2519
KKB6F1 m 55.18 9.4895 73.8718 36.4882
LPB6F1 f 54.8667 12.2509 78.9977 30.7356
LPB6F1 m 67.3167 8.6627 84.3799 50.2534
MAB6F1 f 60.85 8.6627 77.9132 43.7868
MAB6F1 m 56.56 9.4895 75.2518 37.8682
MRLB6F1 f 34.7143 8.0201 50.5118 18.9168
MRLB6F1 m 31.72 9.4895 50.4118 13.0282
NODB6F1 f 40.8 9.4895 59.4918 22.1082
NODB6F1 m 32.5167 8.6627 49.5799 15.4534
NONB6F1 f 34.275 10.6096 55.1731 13.3769
NONB6F1 m 29.76 9.4895 48.4518 11.0682
NZBB6F1 f 70.54 9.4895 89.2318 51.8482
NZBB6F1 m 71.425 10.6096 92.3231 50.5269
NZWB6F1 f 68.95 10.6096 89.8481 48.0519
NZWB6F1 m 38.9833 8.6627 56.0466 21.9201
PLB6F1 f 24.7 9.4895 43.3918 6.0082
PLB6F1 m 24.8167 8.6627 41.8799 7.7534
RIIIB6F1 f 58.22 9.4895 76.9118 39.5282
RIIIB6F1 m 38.5 7.5021 53.2772 23.7228
SEAB6F1 f 5.75 7.5021 20.5272 0.0
SEAB6F1 m 10.54 9.4895 29.2318 0.0
SJLB6F1 f 44.9167 8.6627 61.9799 27.8534
SJLB6F1 m 42.1 10.6096 62.9981 21.2019
SMB6F1 f 48.775 10.6096 69.6731 27.8769
SMB6F1 m 22.8667 8.6627 39.9299 5.8034
SWRB6F1 f 36.325 10.6096 57.2231 15.4269
SWRB6F1 m 40.725 10.6096 61.6231 19.8269


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 64.9483 6.4244 77.6028 52.2939
AB6F1 both 57.8958 8.1032 73.857 41.9346
AKB6F1 both 31.35 9.1882 49.4483 13.2517
BKSB6F1 both 70.165 6.4244 82.8194 57.5106
BTBRB6F1 both 58.85 7.5021 73.6272 44.0728
BUB6F1 both 80.6557 6.2124 92.8924 68.419
C3B6F1 both 44.6375 7.5021 59.4147 29.8603
C57BL/6J both 30.8674 5.1553 41.022 20.7127
C57LB6F1 both 39.9757 6.2124 52.2124 27.739
C58B6F1 both 24.28 8.8766 41.7646 6.7954
CBAB6F1 both 20.4725 7.1171 34.4914 6.4536
CByB6F1 both 23.8175 7.1171 37.8364 9.7986
D2B6F1 both 42.38 6.7101 55.5971 29.1629
DDYB6F1 both 58.815 7.1171 72.8339 44.7961
FVBB6F1 both 52.2283 6.4244 64.8828 39.5739
IB6F1 both 35.5167 6.1255 47.5822 23.4511
KKB6F1 both 67.165 7.1171 81.1839 53.1461
LPB6F1 both 61.0917 7.5021 75.8689 46.3145
MAB6F1 both 58.705 6.4244 71.3594 46.0506
MRLB6F1 both 33.2171 6.2124 45.4538 20.9805
NODB6F1 both 36.6583 6.4244 49.3128 24.0039
NONB6F1 both 32.0175 7.1171 46.0364 17.9986
NZBB6F1 both 70.9825 7.1171 85.0014 56.9636
NZWB6F1 both 53.9667 6.8485 67.4563 40.477
PLB6F1 both 24.7583 6.4244 37.4128 12.1039
RIIIB6F1 both 48.36 6.0484 60.2738 36.4462
SEAB6F1 both 8.145 6.0484 20.0588 0.0
SJLB6F1 both 43.5083 6.8485 56.998 30.0187
SMB6F1 both 35.8208 6.8485 49.3105 22.3312
SWRB6F1 both 38.525 7.5021 53.3022 23.7478




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA