Project measure / variable:   Palmer5   d2_context

ID, description, units MPD:59722   d2_context   percentage of time freezing to context on day 2   [%]  
Data set, strains Palmer5   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Palmer5 - percentage of time freezing to context on day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means22.2   % 14.5   %
Median of the strain means15.0   % 9.12   %
SD of the strain means± 19.0 ± 14.6
Coefficient of variation (CV)0.860 1.01
Min–max range of strain means1.10   –   64.3   % 0.900   –   54.9   %
Mean sample size per strain5.1   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3525.354 3525.354 8.8907 0.0031
strain 29 67729.4933 2335.4998 5.89 < 0.0001
sex:strain 29 13543.3218 467.0111 1.1778 0.25
Residuals 251 99526.6365 396.5205


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 49.7 38.5   6 15.7 0.775 0.5, 95.6 1.45
129SB6F1 m 24.9 25.3   5 11.3 1.02 1.4, 68.0 0.71
AB6F1 f 54.8 41.8   3 24.1 0.763 15.3, 98.6 1.71
AB6F1 m 35.5 17.6   4 8.8 0.495 9.3, 47.0 1.43
AKB6F1 f 11.8 11.8   4 5.88 0.996 3.4, 29.2 -0.54
AKB6F1 m 1.35 1.91   2   1.35 1.41 -0.9
BKSB6F1 f 33.0 29.2   5 13.0 0.883 3.4, 70.8 0.57
BKSB6F1 m 24.7 33.4   6 13.6 1.35 0.69
BTBRB6F1 f 12.9 12.0   4 6.02 0.931 2.5, 30.1 -0.49
BTBRB6F1 m 15.7 11.4   4 5.69 0.724 4.6, 31.0 0.08
BUB6F1 f 19.5 31.5   7 11.9 1.62 1.1, 88.8 -0.14
BUB6F1 m 40.0 38.1   5 17.1 0.953 0.7, 82.4 1.74
C3B6F1 f 1.88 2.55   4 1.27 1.36 -1.06
C3B6F1 m 1.15 1.18   4 0.592 1.03 -0.91
C57BL/6J f 10.3 7.66   8 2.71 0.746 1.3, 21.2 -0.62
C57BL/6J m 13.1 14.5   9 4.82 1.1 0.7, 40.9 -0.1
C57LB6F1 f 8.04 7.85   7 2.97 0.976 0.5, 23.7 -0.74
C57LB6F1 m 3.4 3.33   5 1.49 0.98 -0.76
C58B6F1 f 5.3 5.27   6 2.15 0.994 0.2, 13.0 -0.89
C58B6F1 m 0.95 0.3   4 0.15 0.316 0.7, 1.3 -0.93
CBAB6F1 f 3.76 4.1   5 1.83 1.09 1.3, 10.9 -0.97
CBAB6F1 m 10.1 8.79   4 4.39 0.872 -0.3
CByB6F1 f 31.1 32.2   4 16.1 1.03 0.5, 71.0 0.47
CByB6F1 m 7.24 7.81   5 3.49 1.08 0.2, 17.8 -0.5
D2B6F1 f 20.0 22.7   5 10.1 1.14 0.9, 55.2 -0.11
D2B6F1 m 4.34 6.27   5 2.8 1.44 0.7, 15.3 -0.7
DDYB6F1 f 38.7 28.9   4 14.5 0.748 0.4, 69.6 0.87
DDYB6F1 m 18.7 29.4   5 13.2 1.57 0.7, 68.7 0.29
FVBB6F1 f 26.7 26.1   5 11.7 0.976 0.9, 64.4 0.24
FVBB6F1 m 2.29 2.19   7 0.827 0.957 -0.84
IB6F1 f 17.1 11.7   6 4.76 0.683 7.7, 34.2 -0.27
IB6F1 m 8.13 13.5   6 5.5 1.66 0.2, 34.5 -0.44
KKB6F1 f 44.6 31.4   4 15.7 0.705 14.1, 88.1 1.18
KKB6F1 m 23.7 33.6   5 15.0 1.42 0.2, 75.8 0.63
LPB6F1 f 33.2 14.3   3 8.26 0.431 17.6, 45.7 0.58
LPB6F1 m 46.1 37.9   6 15.5 0.822 2.7, 88.8 2.16
MAB6F1 f 9.17 9.71   6 3.96 1.06 -0.68
MAB6F1 m 16.9 23.8   5 10.6 1.41 0.2, 56.6 0.16
MRLB6F1 f 10.5 8.52   7 3.22 0.81 0.2, 22.1 -0.61
MRLB6F1 m 1.3 1.44   5 0.645 1.11 0.2, 3.6 -0.9
NODB6F1 f 35.3 27.7   5 12.4 0.785 5.5, 61.0 0.69
NODB6F1 m 22.4 20.9   6 8.53 0.934 2.0, 61.9 0.54
NONB6F1 f 4.03 4.15   4 2.08 1.03 -0.95
NONB6F1 m 0.9 0.742   5 0.332 0.824 0.2, 1.8 -0.93
NZBB6F1 f 64.3 26.7   5 12.0 0.416 26.2, 88.6 2.21
NZBB6F1 m 54.9 47.5   4 23.7 0.865 12.6, 99.3 2.76
NZWB6F1 f 49.0 32.1   4 16.0 0.654 12.6, 90.2 1.41
NZWB6F1 m 6.5 5.86   6 2.39 0.902 0.7, 16.2 -0.55
PLB6F1 f 5.7 7.92   5 3.54 1.39 0.7, 19.6 -0.86
PLB6F1 m 12.5 20.5   6 8.35 1.64 2.1, 54.1 -0.14
RIIIB6F1 f 1.14 1.18   5 0.53 1.04 -1.1
RIIIB6F1 m 1.04 0.691   8 0.244 0.666 0.4, 2.2 -0.92
SEAB6F1 f 6.28 5.97   9 1.99 0.95 0.4, 19.7 -0.83
SEAB6F1 m 2.44 1.79   7 0.678 0.735 0.4, 5.3 -0.82
SJLB6F1 f 52.4 24.2   6 9.89 0.462 18.7, 81.0 1.59
SJLB6F1 m 26.1 26.0   4 13.0 0.995 3.4, 59.6 0.79
SMB6F1 f 3.47 5.5   4 2.75 1.58 0.2, 11.7 -0.98
SMB6F1 m 7.1 5.65   6 2.31 0.796 0.9, 16.7 -0.51
SWRB6F1 f 1.1 1.43   4 0.715 1.3 -1.11
SWRB6F1 m 2.27 2.47   4 1.23 1.08 0.2, 5.5 -0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 49.7167 8.1294 65.7271 33.7062
129SB6F1 m 24.94 8.9053 42.4786 7.4014
AB6F1 f 54.8 11.4967 77.4422 32.1578
AB6F1 m 35.525 9.9564 55.1338 15.9162
AKB6F1 f 11.8 9.9564 31.4088 0.0
AKB6F1 m 1.35 14.0805 29.081 0.0
BKSB6F1 f 33.02 8.9053 50.5586 15.4814
BKSB6F1 m 24.7333 8.1294 40.7438 8.7229
BTBRB6F1 f 12.925 9.9564 32.5338 0.0
BTBRB6F1 m 15.7 9.9564 35.3088 0.0
BUB6F1 f 19.4857 7.5263 34.3085 4.6629
BUB6F1 m 40.02 8.9053 57.5586 22.4814
C3B6F1 f 1.875 9.9564 21.4838 0.0
C3B6F1 m 1.15 9.9564 20.7588 0.0
C57BL/6J f 10.275 7.0402 24.1405 0.0
C57BL/6J m 13.1333 6.6376 26.2058 0.0608
C57LB6F1 f 8.0429 7.5263 22.8657 0.0
C57LB6F1 m 3.4 8.9053 20.9386 0.0
C58B6F1 f 5.3 8.1294 21.3105 0.0
C58B6F1 m 0.95 9.9564 20.5588 0.0
CBAB6F1 f 3.76 8.9053 21.2986 0.0
CBAB6F1 m 10.075 9.9564 29.6838 0.0
CByB6F1 f 31.125 9.9564 50.7338 11.5162
CByB6F1 m 7.24 8.9053 24.7786 0.0
D2B6F1 f 19.96 8.9053 37.4986 2.4214
D2B6F1 m 4.34 8.9053 21.8786 0.0
DDYB6F1 f 38.675 9.9564 58.2838 19.0662
DDYB6F1 m 18.7 8.9053 36.2386 1.1614
FVBB6F1 f 26.72 8.9053 44.2586 9.1814
FVBB6F1 m 2.2857 7.5263 17.1085 0.0
IB6F1 f 17.0833 8.1294 33.0938 1.0729
IB6F1 m 8.1333 8.1294 24.1438 0.0
KKB6F1 f 44.575 9.9564 64.1838 24.9662
KKB6F1 m 23.7 8.9053 41.2386 6.1614
LPB6F1 f 33.2333 11.4967 55.8756 10.5911
LPB6F1 m 46.1 8.1294 62.1105 30.0895
MAB6F1 f 9.1667 8.1294 25.1771 0.0
MAB6F1 m 16.88 8.9053 34.4186 0.0
MRLB6F1 f 10.5286 7.5263 25.3514 0.0
MRLB6F1 m 1.3 8.9053 18.8386 0.0
NODB6F1 f 35.3 8.9053 52.8386 17.7614
NODB6F1 m 22.3667 8.1294 38.3771 6.3562
NONB6F1 f 4.025 9.9564 23.6338 0.0
NONB6F1 m 0.9 8.9053 18.4386 0.0
NZBB6F1 f 64.3 8.9053 81.8386 46.7614
NZBB6F1 m 54.875 9.9564 74.4838 35.2662
NZWB6F1 f 49.05 9.9564 68.6588 29.4412
NZWB6F1 m 6.5 8.1294 22.5105 0.0
PLB6F1 f 5.7 8.9053 23.2386 0.0
PLB6F1 m 12.4667 8.1294 28.4771 0.0
RIIIB6F1 f 1.14 8.9053 18.6786 0.0
RIIIB6F1 m 1.0375 7.0402 14.903 0.0
SEAB6F1 f 6.2778 6.6376 19.3503 0.0
SEAB6F1 m 2.4429 7.5263 17.2657 0.0
SJLB6F1 f 52.4 8.1294 68.4105 36.3895
SJLB6F1 m 26.15 9.9564 45.7588 6.5412
SMB6F1 f 3.475 9.9564 23.0838 0.0
SMB6F1 m 7.1 8.1294 23.1105 0.0
SWRB6F1 f 1.1 9.9564 20.7088 0.0
SWRB6F1 m 2.275 9.9564 21.8838 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 37.3283 6.0289 49.202 25.4546
AB6F1 both 45.1625 7.6043 60.1389 30.1861
AKB6F1 both 6.575 8.6225 23.5567 0.0
BKSB6F1 both 28.8767 6.0289 40.7504 17.003
BTBRB6F1 both 14.3125 7.0402 28.178 0.447
BUB6F1 both 29.7529 5.8299 41.2346 18.2711
C3B6F1 both 1.5125 7.0402 15.378 0.0
C57BL/6J both 11.7042 4.8379 21.2323 2.176
C57LB6F1 both 5.7214 5.8299 17.2031 0.0
C58B6F1 both 3.125 6.4268 15.7824 0.0
CBAB6F1 both 6.9175 6.679 20.0715 0.0
CByB6F1 both 19.1825 6.679 32.3365 6.0285
D2B6F1 both 12.15 6.297 24.5517 0.0
DDYB6F1 both 28.6875 6.679 41.8415 15.5335
FVBB6F1 both 14.5029 5.8299 25.9846 3.0211
IB6F1 both 12.6083 5.7483 23.9295 1.2872
KKB6F1 both 34.1375 6.679 47.2915 20.9835
LPB6F1 both 39.6667 7.0402 53.5322 25.8012
MAB6F1 both 13.0233 6.0289 24.897 1.1496
MRLB6F1 both 5.9143 5.8299 17.396 0.0
NODB6F1 both 28.8333 6.0289 40.707 16.9596
NONB6F1 both 2.4625 6.679 15.6165 0.0
NZBB6F1 both 59.5875 6.679 72.7415 46.4335
NZWB6F1 both 27.775 6.4268 40.4324 15.1176
PLB6F1 both 9.0833 6.0289 20.957 0.0
RIIIB6F1 both 1.0888 5.676 12.2675 0.0
SEAB6F1 both 4.3603 5.0176 14.2422 0.0
SJLB6F1 both 39.275 6.4268 51.9324 26.6176
SMB6F1 both 5.2875 6.4268 17.9449 0.0
SWRB6F1 both 1.6875 7.0402 15.553 0.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA