Phenotype measure:   Palmer5   d1_tone

ID, description, units MPD:59721   d1_tone   percentage of time freezing during tone presentation on day 1   [%]
Data set, strains Palmer5   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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Palmer5 - percentage of time freezing during tone presentation on day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means2.36   % 2.05   %
Median of the strain means1.79   % 1.56   %
SD of the strain means± 1.62 ± 1.83
Coefficient of variation (CV)0.685 0.891
Min–max range of strain means0.113   –   6.88   % 0.225   –   7.65   %
Mean sample size per strain5.1   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.2456 4.2456 0.3834 0.5363
strain 29 483.1385 16.6599 1.5045 0.0523
sex:strain 29 418.3344 14.4253 1.3027 0.1451
Residuals 251 2779.353 11.0731


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 1.34 1.26   6 0.516 0.94 -0.63
129SB6F1 m 2.15 1.97   5 0.88 0.915 0.44, 4.5 0.06
AB6F1 f 5.66 2.69   3 1.55 0.475 3.13, 8.48 2.04
AB6F1 m 1.56 1.48   4 0.739 0.945 0.45, 3.57 -0.27
AKB6F1 f 1.56 1.65   4 0.825 1.05 -0.5
AKB6F1 m 0.225 0.318   2   0.225 1.41 -1.0
BKSB6F1 f 0.908 1.4   5 0.625 1.54 -0.9
BKSB6F1 m 4.71 10.9   6 4.44 2.31 1.46
BTBRB6F1 f 1.45 2.35   4 1.17 1.62 -0.56
BTBRB6F1 m 4.69 5.85   4 2.92 1.25 0.9, 13.4 1.45
BUB6F1 f 2.62 3.85   7 1.46 1.47 0.45, 11.2 0.16
BUB6F1 m 4.11 3.24   5 1.45 0.789 1.13
C3B6F1 f 0.568 1.14   4 0.568 2.0 -1.11
C3B6F1 m 1.91 1.7   4 0.851 0.893 -0.08
C57BL/6J f 4.14 3.64   8 1.29 0.878 0.9, 9.38 1.1
C57BL/6J m 5.9 6.26   9 2.09 1.06 2.11
C57LB6F1 f 5.04 6.05   7 2.29 1.2 0.45, 17.4 1.66
C57LB6F1 m 1.7 2.01   5 0.899 1.18 -0.19
C58B6F1 f 2.01 1.99   6 0.814 0.992 -0.22
C58B6F1 m 0.338 0.431   4 0.215 1.28 -0.94
CBAB6F1 f 2.95 4.2   5 1.88 1.42 0.36
CBAB6F1 m 1.68 1.72   4 0.862 1.03 -0.2
CByB6F1 f 1.56 2.57   4 1.28 1.64 -0.5
CByB6F1 m 2.06 1.75   5 0.782 0.851 0.01
D2B6F1 f 1.34 1.38   5 0.617 1.03 -0.63
D2B6F1 m 1.07 0.925   5 0.414 0.861 0.45, 2.68 -0.54
DDYB6F1 f 3.35 2.64   4 1.32 0.788 0.45, 5.8 0.61
DDYB6F1 m 1.08 1.17   5 0.525 1.09 -0.53
FVBB6F1 f 1.88 2.06   5 0.919 1.1 -0.3
FVBB6F1 m 0.704 0.963   7 0.364 1.37 -0.74
IB6F1 f 4.42 4.3   6 1.75 0.973 1.27
IB6F1 m 0.893 1.35   6 0.552 1.51 -0.63
KKB6F1 f 3.91 5.22   4 2.61 1.34 0.45, 11.6 0.96
KKB6F1 m 0.804 0.967   5 0.432 1.2 -0.68
LPB6F1 f 1.5 1.02   3 0.588 0.678 0.9, 2.68 -0.53
LPB6F1 m 3.29 2.97   6 1.21 0.905 0.68
MAB6F1 f 1.49 1.52   6 0.619 1.01 -0.54
MAB6F1 m 0.536 0.58   5 0.259 1.08 -0.83
MRLB6F1 f 1.15 1.65   7 0.623 1.43 -0.75
MRLB6F1 m 0.722 0.76   5 0.34 1.05 -0.73
NODB6F1 f 2.41 3.0   5 1.34 1.25 0.03
NODB6F1 m 1.29 1.47   6 0.601 1.14 -0.42
NONB6F1 f 3.24 4.08   4 2.04 1.26 0.54
NONB6F1 m 1.61 1.29   5 0.576 0.799 -0.24
NZBB6F1 f 6.88 3.12   5 1.39 0.453 3.13, 11.6 2.79
NZBB6F1 m 0.782 1.05   4 0.527 1.35 -0.69
NZWB6F1 f 1.9 0.92   4 0.46 0.483 0.9, 3.13 -0.29
NZWB6F1 m 0.97 1.18   6 0.482 1.22 -0.59
PLB6F1 f 0.27 0.402   5 0.18 1.49 -1.29
PLB6F1 m 1.79 2.26   6 0.922 1.26 -0.14
RIIIB6F1 f 1.7 0.859   5 0.384 0.505 0.45, 2.68 -0.41
RIIIB6F1 m 4.38 5.95   8 2.1 1.36 1.28
SEAB6F1 f 1.39 2.1   9 0.7 1.51 -0.6
SEAB6F1 m 0.767 1.09   7 0.41 1.42 -0.7
SJLB6F1 f 2.9 1.66   6 0.679 0.573 0.45, 5.36 0.33
SJLB6F1 m 7.65 9.34   4 4.67 1.22 1.84, 21.5 3.07
SMB6F1 f 0.113 0.225   4 0.113 2.0 -1.39
SMB6F1 m 0.525 0.442   6 0.181 0.843 -0.83
SWRB6F1 f 1.23 1.91   4 0.954 1.55 -0.7
SWRB6F1 m 1.56 1.29   4 0.645 0.825 -0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 1.3433 1.3585 4.0188 0.0
129SB6F1 m 2.15 1.4882 5.0809 0.0
AB6F1 f 5.6567 1.9212 9.4404 1.8729
AB6F1 m 1.565 1.6638 4.8418 0.0
AKB6F1 f 1.565 1.6638 4.8418 0.0
AKB6F1 m 0.225 2.353 4.8591 0.0
BKSB6F1 f 0.908 1.4882 3.8389 0.0
BKSB6F1 m 4.705 1.3585 7.3805 2.0295
BTBRB6F1 f 1.4525 1.6638 4.7293 0.0
BTBRB6F1 m 4.69 1.6638 7.9668 1.4132
BUB6F1 f 2.6157 1.2577 5.0928 0.1387
BUB6F1 m 4.108 1.4882 7.0389 1.1771
C3B6F1 f 0.5675 1.6638 3.8443 0.0
C3B6F1 m 1.9075 1.6638 5.1843 0.0
C57BL/6J f 4.1425 1.1765 6.4596 1.8254
C57BL/6J m 5.9 1.1092 8.0845 3.7155
C57LB6F1 f 5.0414 1.2577 7.5185 2.5644
C57LB6F1 m 1.7 1.4882 4.6309 0.0
C58B6F1 f 2.01 1.3585 4.6855 0.0
C58B6F1 m 0.3375 1.6638 3.6143 0.0
CBAB6F1 f 2.948 1.4882 5.8789 0.0171
CBAB6F1 m 1.675 1.6638 4.9518 0.0
CByB6F1 f 1.5625 1.6638 4.8393 0.0
CByB6F1 m 2.056 1.4882 4.9869 0.0
D2B6F1 f 1.342 1.4882 4.2729 0.0
D2B6F1 m 1.074 1.4882 4.0049 0.0
DDYB6F1 f 3.35 1.6638 6.6268 0.0732
DDYB6F1 m 1.076 1.4882 4.0069 0.0
FVBB6F1 f 1.876 1.4882 4.8069 0.0
FVBB6F1 m 0.7043 1.2577 3.1813 0.0
IB6F1 f 4.415 1.3585 7.0905 1.7395
IB6F1 m 0.8933 1.3585 3.5688 0.0
KKB6F1 f 3.91 1.6638 7.1868 0.6332
KKB6F1 m 0.804 1.4882 3.7349 0.0
LPB6F1 f 1.5033 1.9212 5.2871 0.0
LPB6F1 m 3.2867 1.3585 5.9622 0.6112
MAB6F1 f 1.4933 1.3585 4.1688 0.0
MAB6F1 m 0.536 1.4882 3.4669 0.0
MRLB6F1 f 1.1543 1.2577 3.6313 0.0
MRLB6F1 m 0.722 1.4882 3.6529 0.0
NODB6F1 f 2.412 1.4882 5.3429 0.0
NODB6F1 m 1.2883 1.3585 3.9638 0.0
NONB6F1 f 3.2375 1.6638 6.5143 0.0
NONB6F1 m 1.61 1.4882 4.5409 0.0
NZBB6F1 f 6.88 1.4882 9.8109 3.9491
NZBB6F1 m 0.7825 1.6638 4.0593 0.0
NZWB6F1 f 1.9025 1.6638 5.1793 0.0
NZWB6F1 m 0.97 1.3585 3.6455 0.0
PLB6F1 f 0.27 1.4882 3.2009 0.0
PLB6F1 m 1.7883 1.3585 4.4638 0.0
RIIIB6F1 f 1.7 1.4882 4.6309 0.0
RIIIB6F1 m 4.3838 1.1765 6.7008 2.0667
SEAB6F1 f 1.39 1.1092 3.5745 0.0
SEAB6F1 m 0.7671 1.2577 3.2442 0.0
SJLB6F1 f 2.905 1.3585 5.5805 0.2295
SJLB6F1 m 7.6525 1.6638 10.9293 4.3757
SMB6F1 f 0.1125 1.6638 3.3893 0.0
SMB6F1 m 0.525 1.3585 3.2005 0.0
SWRB6F1 f 1.2275 1.6638 4.5043 0.0
SWRB6F1 m 1.565 1.6638 4.8418 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 1.7467 1.0075 3.7309 0.0
AB6F1 both 3.6108 1.2708 6.1135 1.1081
AKB6F1 both 0.895 1.4409 3.7328 0.0
BKSB6F1 both 2.8065 1.0075 4.7907 0.8223
BTBRB6F1 both 3.0713 1.1765 5.3883 0.7542
BUB6F1 both 3.3619 0.9742 5.2806 1.4431
C3B6F1 both 1.2375 1.1765 3.5546 0.0
C57BL/6J both 5.0213 0.8085 6.6135 3.429
C57LB6F1 both 3.3707 0.9742 5.2894 1.452
C58B6F1 both 1.1737 1.074 3.2889 0.0
CBAB6F1 both 2.3115 1.1161 4.5097 0.1133
CByB6F1 both 1.8092 1.1161 4.0074 0.0
D2B6F1 both 1.208 1.0523 3.2804 0.0
DDYB6F1 both 2.213 1.1161 4.4112 0.0148
FVBB6F1 both 1.2901 0.9742 3.2089 0.0
IB6F1 both 2.6542 0.9606 4.546 0.7623
KKB6F1 both 2.357 1.1161 4.5552 0.1588
LPB6F1 both 2.395 1.1765 4.7121 0.0779
MAB6F1 both 1.0147 1.0075 2.9989 0.0
MRLB6F1 both 0.9381 0.9742 2.8569 0.0
NODB6F1 both 1.8502 1.0075 3.8344 0.0
NONB6F1 both 2.4237 1.1161 4.6219 0.2256
NZBB6F1 both 3.8312 1.1161 6.0294 1.6331
NZWB6F1 both 1.4362 1.074 3.5514 0.0
PLB6F1 both 1.0292 1.0075 3.0134 0.0
RIIIB6F1 both 3.0419 0.9485 4.9099 1.1738
SEAB6F1 both 1.0786 0.8385 2.7299 0.0
SJLB6F1 both 5.2787 1.074 7.3939 3.1636
SMB6F1 both 0.3187 1.074 2.4339 0.0
SWRB6F1 both 1.3963 1.1765 3.7133 0.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA