Project measure / variable:   Palmer5   distance

ID, description, units MPD:59712   distance   total distance traveled   [cm]  
Data set, strains Palmer5   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer5 - total distance traveled



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means5088   cm 4999   cm
Median of the strain means4988   cm 4826   cm
SD of the strain means± 1213 ± 1421
Coefficient of variation (CV)0.238 0.284
Min–max range of strain means2205   –   8566   cm 2909   –   10071   cm
Mean sample size per strain5.1   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3594173.5457 3594173.5457 2.7107 0.1009
strain 29 386603549.3424 13331156.8739 10.0542 < 0.0001
sex:strain 29 68412209.8114 2359041.7176 1.7792 0.0105
Residuals 251 332806909.3676 1325923.9417


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 4524.0 1611.0   6 658.0 0.356 2499.0, 6983.0 -0.47
129SB6F1 m 4162.0 1036.0   5 463.0 0.249 3272.0, 5674.0 -0.59
AB6F1 f 3772.0 333.0   3 192.0 0.0883 3387.0, 3981.0 -1.09
AB6F1 m 3613.0 652.0   4 326.0 0.181 2671.0, 4166.0 -0.97
AKB6F1 f 7318.0 1574.0   4 787.0 0.215 5021.0, 8565.0 1.84
AKB6F1 m 6672.0 788.0   2   557.0 0.118 6114.0, 7229.0 1.18
BKSB6F1 f 3936.0 1029.0   5 460.0 0.261 2434.0, 4876.0 -0.95
BKSB6F1 m 3579.0 665.0   6 271.0 0.186 2490.0, 4258.0 -1.0
BTBRB6F1 f 5014.0 1178.0   4 589.0 0.235 3690.0, 6159.0 -0.06
BTBRB6F1 m 5419.0 1192.0   4 596.0 0.22 4126.0, 7000.0 0.3
BUB6F1 f 5902.0 1379.0   7 521.0 0.234 4258.0, 8558.0 0.67
BUB6F1 m 5438.0 1462.0   5 654.0 0.269 3531.0, 7471.0 0.31
C3B6F1 f 4545.0 1073.0   4 537.0 0.236 3350.0, 5874.0 -0.45
C3B6F1 m 3699.0 619.0   4 309.0 0.167 3064.0, 4489.0 -0.91
C57BL/6J f 5419.0 909.0   8 322.0 0.168 4380.0, 6592.0 0.27
C57BL/6J m 4279.0 1216.0   9 405.0 0.284 2288.0, 5885.0 -0.51
C57LB6F1 f 5708.0 1160.0   7 439.0 0.203 4437.0, 7569.0 0.51
C57LB6F1 m 4215.0 783.0   5 350.0 0.186 3201.0, 4945.0 -0.55
C58B6F1 f 7084.0 917.0   6 374.0 0.129 5648.0, 8403.0 1.65
C58B6F1 m 10071.0 1406.0   4 703.0 0.14 8009.0, 11140.0 3.57
CBAB6F1 f 5225.0 578.0   5 259.0 0.111 4457.0, 5930.0 0.11
CBAB6F1 m 4878.0 480.0   4 240.0 0.0983 4282.0, 5444.0 -0.08
CByB6F1 f 5330.0 974.0   4 487.0 0.183 4491.0, 6555.0 0.2
CByB6F1 m 5933.0 813.0   5 364.0 0.137 5064.0, 7097.0 0.66
D2B6F1 f 4514.0 1231.0   5 551.0 0.273 2910.0, 6372.0 -0.47
D2B6F1 m 4960.0 1119.0   5 500.0 0.226 4043.0, 6402.0 -0.03
DDYB6F1 f 4507.0 1156.0   4 578.0 0.256 3042.0, 5820.0 -0.48
DDYB6F1 m 4422.0 812.0   5 363.0 0.184 3430.0, 5154.0 -0.41
FVBB6F1 f 5893.0 1281.0   5 573.0 0.217 4507.0, 7359.0 0.66
FVBB6F1 m 5338.0 1440.0   7 544.0 0.27 4144.0, 8382.0 0.24
IB6F1 f 4935.0 857.0   6 350.0 0.174 3256.0, 5643.0 -0.13
IB6F1 m 5806.0 541.0   6 221.0 0.0931 5095.0, 6444.0 0.57
KKB6F1 f 4522.0 1107.0   4 554.0 0.245 3663.0, 6058.0 -0.47
KKB6F1 m 4695.0 575.0   5 257.0 0.122 3834.0, 5222.0 -0.21
LPB6F1 f 2205.0 759.0   3 438.0 0.344 1463.0, 2980.0 -2.38
LPB6F1 m 2909.0 549.0   6 224.0 0.189 1989.0, 3610.0 -1.47
MAB6F1 f 4916.0 956.0   6 390.0 0.194 3530.0, 5952.0 -0.14
MAB6F1 m 4928.0 1025.0   5 458.0 0.208 3620.0, 6309.0 -0.05
MRLB6F1 f 5125.0 1065.0   7 402.0 0.208 3429.0, 6856.0 0.03
MRLB6F1 m 5554.0 741.0   5 331.0 0.133 4621.0, 6536.0 0.39
NODB6F1 f 5724.0 1153.0   5 516.0 0.201 4794.0, 7628.0 0.52
NODB6F1 m 5519.0 527.0   6 215.0 0.0955 4762.0, 6286.0 0.37
NONB6F1 f 4543.0 1849.0   4 925.0 0.407 2270.0, 6088.0 -0.45
NONB6F1 m 4240.0 2909.0   5 1301.0 0.686 2314.0, 9366.0 -0.53
NZBB6F1 f 4961.0 1301.0   5 582.0 0.262 3781.0, 6641.0 -0.1
NZBB6F1 m 3307.0 993.0   4 496.0 0.3 1902.0, 4241.0 -1.19
NZWB6F1 f 3351.0 387.0   4 193.0 0.115 3071.0, 3910.0 -1.43
NZWB6F1 m 3737.0 1105.0   6 451.0 0.296 2742.0, 5743.0 -0.89
PLB6F1 f 3852.0 282.0   5 126.0 0.0732 3546.0, 4308.0 -1.02
PLB6F1 m 3849.0 489.0   6 200.0 0.127 3220.0, 4447.0 -0.81
RIIIB6F1 f 6034.0 477.0   5 213.0 0.079 5422.0, 6626.0 0.78
RIIIB6F1 m 5151.0 707.0   8 250.0 0.137 4286.0, 6432.0 0.11
SEAB6F1 f 5495.0 654.0   9 218.0 0.119 4433.0, 6662.0 0.34
SEAB6F1 m 7110.0 2900.0   7 1096.0 0.408 4321.0, 12052.0 1.49
SJLB6F1 f 5223.0 990.0   6 404.0 0.19 3969.0, 6470.0 0.11
SJLB6F1 m 4775.0 681.0   4 341.0 0.143 4182.0, 5757.0 -0.16
SMB6F1 f 8566.0 1995.0   4 997.0 0.233 6793.0, 11292.0 2.87
SMB6F1 m 7045.0 718.0   6 293.0 0.102 6387.0, 8002.0 1.44
SWRB6F1 f 4506.0 404.0   4 202.0 0.0898 3960.0, 4836.0 -0.48
SWRB6F1 m 4655.0 1324.0   4 662.0 0.284 3172.0, 6314.0 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 4523.9 470.0929 5449.7292 3598.0708
129SB6F1 m 4162.5 514.961 5176.6951 3148.3049
AB6F1 f 3771.5 664.8117 5080.8203 2462.1797
AB6F1 m 3612.975 575.7439 4746.8796 2479.0704
AKB6F1 f 7317.55 575.7439 8451.4546 6183.6454
AKB6F1 m 6671.85 814.2248 8275.4333 5068.2667
BKSB6F1 f 3936.5 514.961 4950.6951 2922.3049
BKSB6F1 m 3579.1 470.0929 4504.9292 2653.2708
BTBRB6F1 f 5014.45 575.7439 6148.3546 3880.5454
BTBRB6F1 m 5419.0 575.7439 6552.9046 4285.0954
BUB6F1 f 5901.6714 435.2214 6758.8228 5044.5201
BUB6F1 m 5437.66 514.961 6451.8551 4423.4649
C3B6F1 f 4544.525 575.7439 5678.4296 3410.6204
C3B6F1 m 3699.25 575.7439 4833.1546 2565.3454
C57BL/6J f 5418.9 407.1124 6220.6916 4617.1084
C57BL/6J m 4278.6111 383.8292 5034.5475 3522.6747
C57LB6F1 f 5708.2857 435.2214 6565.437 4851.1344
C57LB6F1 m 4214.96 514.961 5229.1551 3200.7649
C58B6F1 f 7083.6833 470.0929 8009.5126 6157.8541
C58B6F1 m 10071.35 575.7439 11205.2546 8937.4454
CBAB6F1 f 5224.86 514.961 6239.0551 4210.6649
CBAB6F1 m 4877.65 575.7439 6011.5546 3743.7454
CByB6F1 f 5330.45 575.7439 6464.3546 4196.5454
CByB6F1 m 5933.42 514.961 6947.6151 4919.2249
D2B6F1 f 4514.32 514.961 5528.5151 3500.1249
D2B6F1 m 4960.16 514.961 5974.3551 3945.9649
DDYB6F1 f 4506.65 575.7439 5640.5546 3372.7454
DDYB6F1 m 4421.78 514.961 5435.9751 3407.5849
FVBB6F1 f 5892.9 514.961 6907.0951 4878.7049
FVBB6F1 m 5337.6143 435.2214 6194.7656 4480.463
IB6F1 f 4934.8833 470.0929 5860.7126 4009.0541
IB6F1 m 5806.2333 470.0929 6732.0626 4880.4041
KKB6F1 f 4521.575 575.7439 5655.4796 3387.6704
KKB6F1 m 4694.66 514.961 5708.8551 3680.4649
LPB6F1 f 2204.7 664.8117 3514.0203 895.3797
LPB6F1 m 2909.4833 470.0929 3835.3126 1983.6541
MAB6F1 f 4915.8167 470.0929 5841.6459 3989.9874
MAB6F1 m 4928.22 514.961 5942.4151 3914.0249
MRLB6F1 f 5125.1286 435.2214 5982.2799 4267.9772
MRLB6F1 m 5553.64 514.961 6567.8351 4539.4449
NODB6F1 f 5724.28 514.961 6738.4751 4710.0849
NODB6F1 m 5518.6167 470.0929 6444.4459 4592.7874
NONB6F1 f 4543.025 575.7439 5676.9296 3409.1204
NONB6F1 m 4240.48 514.961 5254.6751 3226.2849
NZBB6F1 f 4961.18 514.961 5975.3751 3946.9849
NZBB6F1 m 3306.7 575.7439 4440.6046 2172.7954
NZWB6F1 f 3351.35 575.7439 4485.2546 2217.4454
NZWB6F1 m 3736.8833 470.0929 4662.7126 2811.0541
PLB6F1 f 3852.06 514.961 4866.2551 2837.8649
PLB6F1 m 3848.7 470.0929 4774.5292 2922.8708
RIIIB6F1 f 6033.74 514.961 7047.9351 5019.5449
RIIIB6F1 m 5150.675 407.1124 5952.4666 4348.8834
SEAB6F1 f 5495.4556 383.8292 6251.392 4739.5191
SEAB6F1 m 7109.6429 435.2214 7966.7942 6252.4915
SJLB6F1 f 5222.9167 470.0929 6148.7459 4297.0874
SJLB6F1 m 4774.85 575.7439 5908.7546 3640.9454
SMB6F1 f 8566.3 575.7439 9700.2046 7432.3954
SMB6F1 m 7045.45 470.0929 7971.2792 6119.6208
SWRB6F1 f 4506.275 575.7439 5640.1796 3372.3704
SWRB6F1 m 4654.675 575.7439 5788.5796 3520.7704


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 4343.2 348.6302 5029.8133 3656.5867
AB6F1 both 3692.2375 439.7316 4558.2715 2826.2035
AKB6F1 both 6994.7 498.6088 7976.6902 6012.7098
BKSB6F1 both 3757.8 348.6302 4444.4133 3071.1867
BTBRB6F1 both 5216.725 407.1124 6018.5166 4414.9334
BUB6F1 both 5669.6657 337.1211 6333.6123 5005.7192
C3B6F1 both 4121.8875 407.1124 4923.6791 3320.0959
C57BL/6J both 4848.7556 279.7612 5399.7342 4297.7769
C57LB6F1 both 4961.6229 337.1211 5625.5694 4297.6763
C58B6F1 both 8577.5167 371.6411 9309.449 7845.5844
CBAB6F1 both 5051.255 386.2207 5811.9013 4290.6087
CByB6F1 both 5631.935 386.2207 6392.5813 4871.2887
D2B6F1 both 4737.24 364.1324 5454.3843 4020.0957
DDYB6F1 both 4464.215 386.2207 5224.8613 3703.5687
FVBB6F1 both 5615.2571 337.1211 6279.2037 4951.3106
IB6F1 both 5370.5583 332.4059 6025.2185 4715.8982
KKB6F1 both 4608.1175 386.2207 5368.7638 3847.4712
LPB6F1 both 2557.0917 407.1124 3358.8833 1755.3
MAB6F1 both 4922.0183 348.6302 5608.6317 4235.405
MRLB6F1 both 5339.3843 337.1211 6003.3308 4675.4377
NODB6F1 both 5621.4483 348.6302 6308.0617 4934.835
NONB6F1 both 4391.7525 386.2207 5152.3988 3631.1062
NZBB6F1 both 4133.94 386.2207 4894.5863 3373.2937
NZWB6F1 both 3544.1167 371.6411 4276.049 2812.1844
PLB6F1 both 3850.38 348.6302 4536.9933 3163.7667
RIIIB6F1 both 5592.2075 328.2245 6238.6326 4945.7824
SEAB6F1 both 6302.5492 290.1476 6873.9834 5731.115
SJLB6F1 both 4998.8833 371.6411 5730.8156 4266.951
SMB6F1 both 7805.875 371.6411 8537.8073 7073.9427
SWRB6F1 both 4580.475 407.1124 5382.2666 3778.6834




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA