Phenotype measure:   Palmer5   center


  STRAIN COMPARISON PLOT
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Palmer5 - duration in center of arena



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means121   s 137   s
Median of the strain means122   s 128   s
SD of the strain means± 48.8 ± 46.9
Coefficient of variation (CV)0.404 0.342
Min–max range of strain means24.6   –   200   s 55.4   –   219   s
Mean sample size per strain5.1   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8498.2479 8498.2479 2.5405 0.1122
strain 29 522591.9243 18020.4112 5.387 < 0.0001
sex:strain 29 138936.0365 4790.8978 1.4322 0.0768
Residuals 251 839630.4417 3345.1412


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129SB6F1 f 90.0 51.2   6 20.9 0.569 24.0, 176.0 -0.63
129SB6F1 m 65.8 36.0   5 16.1 0.547 34.9, 128.0 -1.52
AB6F1 f 24.6 11.6   3 6.67 0.469 11.3, 31.6 -1.97
AB6F1 m 61.4 45.1   4 22.6 0.736 8.7, 118.0 -1.61
AKB6F1 f 172.0 71.9   4 36.0 0.419 115.0, 274.0 1.05
AKB6F1 m 152.0 18.1   2   12.8 0.119 139.0, 164.0 0.32
BKSB6F1 f 59.0 23.4   5 10.5 0.396 26.5, 82.4 -1.27
BKSB6F1 m 70.5 23.2   6 9.46 0.329 36.6, 95.3 -1.42
BTBRB6F1 f 91.8 30.7   4 15.3 0.334 61.4, 133.0 -0.59
BTBRB6F1 m 91.1 30.7   4 15.3 0.337 48.0, 120.0 -0.98
BUB6F1 f 200.0 131.0   7 49.4 0.655 36.1, 390.0 1.62
BUB6F1 m 125.0 48.6   5 21.7 0.389 56.0, 185.0 -0.26
C3B6F1 f 89.6 40.6   4 20.3 0.453 58.6, 149.0 -0.64
C3B6F1 m 120.0 52.4   4 26.2 0.437 89.5, 198.0 -0.36
C57BL/6J f 170.0 71.2   8 25.2 0.418 83.3, 306.0 1.01
C57BL/6J m 168.0 68.9   9 23.0 0.41 32.3, 251.0 0.66
C57LB6F1 f 187.0 58.4   7 22.1 0.313 112.0, 263.0 1.36
C57LB6F1 m 163.0 67.0   5 30.0 0.411 79.5, 254.0 0.55
C58B6F1 f 130.0 39.0   6 15.9 0.301 74.1, 186.0 0.19
C58B6F1 m 190.0 47.8   4 23.9 0.252 138.0, 252.0 1.13
CBAB6F1 f 134.0 53.8   5 24.0 0.402 84.3, 219.0 0.27
CBAB6F1 m 213.0 46.1   4 23.0 0.217 180.0, 279.0 1.62
CByB6F1 f 115.0 35.8   4 17.9 0.31 83.1, 161.0 -0.12
CByB6F1 m 114.0 21.9   5 9.78 0.193 81.9, 134.0 -0.49
D2B6F1 f 56.3 39.6   5 17.7 0.704 10.9, 114.0 -1.32
D2B6F1 m 165.0 44.2   5 19.8 0.268 137.0, 239.0 0.59
DDYB6F1 f 60.0 31.0   4 15.5 0.516 19.9, 94.2 -1.24
DDYB6F1 m 118.0 72.0   5 32.2 0.608 56.4, 237.0 -0.41
FVBB6F1 f 198.0 65.3   5 29.2 0.33 138.0, 269.0 1.58
FVBB6F1 m 198.0 54.3   7 20.5 0.273 128.0, 300.0 1.3
IB6F1 f 94.3 48.9   6 20.0 0.519 39.4, 156.0 -0.54
IB6F1 m 113.0 58.6   6 23.9 0.52 75.0, 228.0 -0.51
KKB6F1 f 148.0 109.0   4 54.7 0.737 64.5, 308.0 0.56
KKB6F1 m 115.0 22.6   5 10.1 0.197 76.1, 136.0 -0.47
LPB6F1 f 30.7 25.6   3 14.8 0.836 5.7, 56.9 -1.84
LPB6F1 m 55.4 51.1   6 20.9 0.923 10.9, 152.0 -1.74
MAB6F1 f 114.0 36.2   6 14.8 0.318 81.6, 174.0 -0.14
MAB6F1 m 101.0 17.8   5 7.95 0.176 82.1, 128.0 -0.77
MRLB6F1 f 120.0 55.4   7 20.9 0.462 65.7, 220.0 -0.02
MRLB6F1 m 84.0 49.2   5 22.0 0.586 34.9, 142.0 -1.13
NODB6F1 f 123.0 51.9   5 23.2 0.421 63.6, 198.0 0.05
NODB6F1 m 131.0 55.3   6 22.6 0.423 66.5, 194.0 -0.13
NONB6F1 f 152.0 72.4   4 36.2 0.478 54.4, 218.0 0.64
NONB6F1 m 171.0 121.0   5 54.3 0.712 93.1, 383.0 0.72
NZBB6F1 f 140.0 35.3   5 15.8 0.252 98.2, 195.0 0.39
NZBB6F1 m 183.0 86.0   4 43.0 0.47 88.9, 297.0 0.98
NZWB6F1 f 72.5 24.8   4 12.4 0.342 48.9, 99.4 -0.99
NZWB6F1 m 115.0 34.0   6 13.9 0.297 55.4, 143.0 -0.47
PLB6F1 f 96.1 58.5   5 26.2 0.609 29.9, 169.0 -0.51
PLB6F1 m 122.0 65.4   6 26.7 0.536 34.2, 224.0 -0.32
RIIIB6F1 f 184.0 53.0   5 23.7 0.288 150.0, 277.0 1.29
RIIIB6F1 m 133.0 49.6   8 17.5 0.374 49.5, 228.0 -0.09
SEAB6F1 f 168.0 45.7   9 15.2 0.272 105.0, 232.0 0.97
SEAB6F1 m 219.0 69.2   7 26.2 0.317 152.0, 313.0 1.75
SJLB6F1 f 97.7 41.3   6 16.8 0.422 55.7, 167.0 -0.47
SJLB6F1 m 206.0 92.3   4 46.1 0.447 132.0, 337.0 1.47
SMB6F1 f 133.0 31.2   4 15.6 0.234 98.9, 173.0 0.25
SMB6F1 m 176.0 55.5   6 22.7 0.316 116.0, 252.0 0.83
SWRB6F1 f 173.0 80.4   4 40.2 0.465 99.3, 271.0 1.07
SWRB6F1 m 174.0 49.2   4 24.6 0.284 99.9, 202.0 0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 90.0333 23.6119 136.5361 43.5306
129SB6F1 m 65.78 25.8656 116.7212 14.8388
AB6F1 f 24.6333 33.3923 90.3982 0.0
AB6F1 m 61.375 28.9186 118.329 4.421
AKB6F1 f 171.675 28.9186 228.629 114.721
AKB6F1 m 151.7 40.8971 232.2452 71.1548
BKSB6F1 f 58.98 25.8656 109.9212 8.0388
BKSB6F1 m 70.45 23.6119 116.9528 23.9472
BTBRB6F1 f 91.8 28.9186 148.754 34.846
BTBRB6F1 m 91.15 28.9186 148.104 34.196
BUB6F1 f 199.7286 21.8604 242.7818 156.6754
BUB6F1 m 124.9 25.8656 175.8412 73.9588
C3B6F1 f 89.6 28.9186 146.554 32.646
C3B6F1 m 119.875 28.9186 176.829 62.921
C57BL/6J f 170.375 20.4485 210.6476 130.1024
C57BL/6J m 167.7667 19.2791 205.736 129.7973
C57LB6F1 f 186.7714 21.8604 229.8246 143.7182
C57LB6F1 m 162.86 25.8656 213.8012 111.9188
C58B6F1 f 129.55 23.6119 176.0528 83.0472
C58B6F1 m 189.95 28.9186 246.904 132.996
CBAB6F1 f 133.72 25.8656 184.6612 82.7788
CBAB6F1 m 212.525 28.9186 269.479 155.571
CByB6F1 f 115.475 28.9186 172.429 58.521
CByB6F1 m 113.54 25.8656 164.4812 62.5988
D2B6F1 f 56.28 25.8656 107.2212 5.3388
D2B6F1 m 164.74 25.8656 215.6812 113.7988
DDYB6F1 f 59.95 28.9186 116.904 2.996
DDYB6F1 m 118.36 25.8656 169.3012 67.4188
FVBB6F1 f 197.98 25.8656 248.9212 147.0388
FVBB6F1 m 198.4286 21.8604 241.4818 155.3754
IB6F1 f 94.3333 23.6119 140.8361 47.8306
IB6F1 m 112.6833 23.6119 159.1861 66.1806
KKB6F1 f 148.35 28.9186 205.304 91.396
KKB6F1 m 114.66 25.8656 165.6012 63.7188
LPB6F1 f 30.6667 33.3923 96.4315 0.0
LPB6F1 m 55.3833 23.6119 101.8861 8.8806
MAB6F1 f 113.9333 23.6119 160.4361 67.4306
MAB6F1 m 101.14 25.8656 152.0812 50.1988
MRLB6F1 f 119.7571 21.8604 162.8103 76.7039
MRLB6F1 m 84.0 25.8656 134.9412 33.0588
NODB6F1 f 123.36 25.8656 174.3012 72.4188
NODB6F1 m 130.9167 23.6119 177.4194 84.4139
NONB6F1 f 151.675 28.9186 208.629 94.721
NONB6F1 m 170.52 25.8656 221.4612 119.5788
NZBB6F1 f 140.36 25.8656 191.3012 89.4188
NZBB6F1 m 183.025 28.9186 239.979 126.071
NZWB6F1 f 72.45 28.9186 129.404 15.496
NZWB6F1 m 114.5333 23.6119 161.0361 68.0306
PLB6F1 f 96.08 25.8656 147.0212 45.1388
PLB6F1 m 122.0 23.6119 168.5028 75.4972
RIIIB6F1 f 183.66 25.8656 234.6012 132.7188
RIIIB6F1 m 132.775 20.4485 173.0476 92.5024
SEAB6F1 f 167.8444 19.2791 205.8138 129.8751
SEAB6F1 m 218.5571 21.8604 261.6103 175.5039
SJLB6F1 f 97.7333 23.6119 144.2361 51.2306
SJLB6F1 m 206.475 28.9186 263.429 149.521
SMB6F1 f 133.375 28.9186 190.329 76.421
SMB6F1 m 175.8833 23.6119 222.3861 129.3806
SWRB6F1 f 172.975 28.9186 229.929 116.021
SWRB6F1 m 173.6 28.9186 230.554 116.646


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 77.9067 17.5111 112.394 43.4193
AB6F1 both 43.0042 22.0869 86.5035 0.0
AKB6F1 both 161.6875 25.0442 211.0111 112.3639
BKSB6F1 both 64.715 17.5111 99.2024 30.2276
BTBRB6F1 both 91.475 20.4485 131.7476 51.2024
BUB6F1 both 162.3143 16.933 195.6631 128.9654
C3B6F1 both 104.7375 20.4485 145.0101 64.4649
C57BL/6J both 169.0708 14.0519 196.7455 141.3962
C57LB6F1 both 174.8157 16.933 208.1646 141.4669
C58B6F1 both 159.75 18.6669 196.5137 122.9863
CBAB6F1 both 173.1225 19.3992 211.3284 134.9166
CByB6F1 both 114.5075 19.3992 152.7134 76.3016
D2B6F1 both 110.51 18.2897 146.5309 74.4891
DDYB6F1 both 89.155 19.3992 127.3609 50.9491
FVBB6F1 both 198.2043 16.933 231.5531 164.8554
IB6F1 both 103.5083 16.6962 136.3908 70.6259
KKB6F1 both 131.505 19.3992 169.7109 93.2991
LPB6F1 both 43.025 20.4485 83.2976 2.7524
MAB6F1 both 107.5367 17.5111 142.024 73.0493
MRLB6F1 both 101.8786 16.933 135.2274 68.5297
NODB6F1 both 127.1383 17.5111 161.6257 92.651
NONB6F1 both 161.0975 19.3992 199.3034 122.8916
NZBB6F1 both 161.6925 19.3992 199.8984 123.4866
NZWB6F1 both 93.4917 18.6669 130.2553 56.728
PLB6F1 both 109.04 17.5111 143.5274 74.5526
RIIIB6F1 both 158.2175 16.4861 190.6863 125.7487
SEAB6F1 both 193.2008 14.5736 221.9029 164.4987
SJLB6F1 both 152.1042 18.6669 188.8678 115.3405
SMB6F1 both 154.6292 18.6669 191.3928 117.8655
SWRB6F1 both 173.2875 20.4485 213.5601 133.0149




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA