Project measure / variable:   Palmer4   distance_d2

ID, description, units MPD:59323   distance_d2   total distance traveled on day 2, saline   [cm]  
Data set, strains Palmer4   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer4 - total distance traveled on day 2, saline



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means3630   cm 3634   cm
Median of the strain means3320   cm 3382   cm
SD of the strain means± 1467 ± 1222
Coefficient of variation (CV)0.404 0.336
Min–max range of strain means1096   –   7194   cm 1654   –   6284   cm
Mean sample size per strain5.8   mice 5.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11287.5457 11287.5457 0.0066 0.9354
strain 29 530039811.3964 18277234.8757 10.6441 < 0.0001
sex:strain 29 73233853.4663 2525305.2919 1.4707 0.0606
Residuals 298 511702326.3095 1717121.9004


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Cacna1c)F1 f 1096.0 610.0   7 231.0 0.557 421.0, 2120.0 -1.73
(129S x B6-Cacna1c)F1 m 1654.0 850.0   5 380.0 0.514 908.0, 2928.0 -1.62
(AJ x B6-Cacna1c)F1 f 2019.0 1051.0   6 429.0 0.52 408.0, 3200.0 -1.1
(AJ x B6-Cacna1c)F1 m 2351.0 1516.0   6 619.0 0.645 549.0, 4183.0 -1.05
(AKR x B6-Cacna1c)F1 f 5247.0 1738.0   5 777.0 0.331 2429.0, 7172.0 1.1
(AKR x B6-Cacna1c)F1 m 4718.0 921.0   5 412.0 0.195 3670.0, 5939.0 0.89
(B6 x B6-Cacna1c)F1 f 3837.0 1825.0   14 488.0 0.476 2265.0, 9801.0 0.14
(B6 x B6-Cacna1c)F1 m 3249.0 1064.0   15 275.0 0.327 1710.0, 5054.0 -0.31
(BALB x B6-Cacna1c)F1 f 4006.0 1499.0   6 612.0 0.374 1113.0, 5316.0 0.26
(BALB x B6-Cacna1c)F1 m 3394.0 1543.0   6 630.0 0.455 963.0, 5565.0 -0.2
(BLKS x B6-Cacna1c)F1 f 1941.0 831.0   6 339.0 0.428 735.0, 3269.0 -1.15
(BLKS x B6-Cacna1c)F1 m 2371.0 266.0   6 108.0 0.112 2131.0, 2728.0 -1.03
(BTBR x B6-Cacna1c)F1 f 3203.0 1476.0   7 558.0 0.461 1841.0, 5185.0 -0.29
(BTBR x B6-Cacna1c)F1 m 2572.0 733.0   6 299.0 0.285 1827.0, 3582.0 -0.87
(BUB x B6-Cacna1c)F1 f 4131.0 2443.0   5 1093.0 0.591 143.0, 6437.0 0.34
(BUB x B6-Cacna1c)F1 m 4817.0 2349.0   5 1050.0 0.488 2212.0, 7302.0 0.97
(C3H x B6-Cacna1c)F1 f 3453.0 841.0   6 343.0 0.244 2513.0, 4514.0 -0.12
(C3H x B6-Cacna1c)F1 m 3766.0 1175.0   5 525.0 0.312 2655.0, 5176.0 0.11
(C58 x B6-Cacna1c)F1 f 5640.0 2630.0   6 1074.0 0.466 1708.0, 8450.0 1.37
(C58 x B6-Cacna1c)F1 m 6103.0 1457.0   6 595.0 0.239 4211.0, 8621.0 2.02
(CBA x B6-Cacna1c)F1 f 5511.0 626.0   5 280.0 0.114 4447.0, 5982.0 1.28
(CBA x B6-Cacna1c)F1 m 4904.0 551.0   5 247.0 0.112 4279.0, 5568.0 1.04
(DBA x B6-Cacna1c)F1 f 2282.0 331.0   5 148.0 0.145 1920.0, 2780.0 -0.92
(DBA x B6-Cacna1c)F1 m 4086.0 1595.0   6 651.0 0.39 2391.0, 6868.0 0.37
(DDY x B6-Cacna1c)F1 f 2124.0 906.0   6 370.0 0.427 1262.0, 3640.0 -1.03
(DDY x B6-Cacna1c)F1 m 2584.0 1251.0   5 560.0 0.484 1544.0, 4610.0 -0.86
(FVB x B6-Cacna1c)F1 f 5062.0 1377.0   6 562.0 0.272 3657.0, 7219.0 0.98
(FVB x B6-Cacna1c)F1 m 3370.0 576.0   6 235.0 0.171 2587.0, 4066.0 -0.22
(ILN x B6-Cacna1c)F1 f 3121.0 1386.0   6 566.0 0.444 1275.0, 4688.0 -0.35
(ILN x B6-Cacna1c)F1 m 3174.0 905.0   6 370.0 0.285 1609.0, 4224.0 -0.38
(KK x B6-Cacna1c)F1 f 2685.0 707.0   6 289.0 0.263 1679.0, 3796.0 -0.64
(KK x B6-Cacna1c)F1 m 2607.0 395.0   6 161.0 0.151 2184.0, 3073.0 -0.84
(LG x B6-Cacna1c)F1 f 4324.0 1918.0   6 783.0 0.443 928.0, 5977.0 0.47
(LG x B6-Cacna1c)F1 m 3361.0 1515.0   6 618.0 0.451 1390.0, 4588.0 -0.22
(LP x B6-Cacna1c)F1 f 2978.0 1556.0   5 696.0 0.522 502.0, 4644.0 -0.44
(LP x B6-Cacna1c)F1 m 2294.0 1870.0   5 836.0 0.815 118.0, 4311.0 -1.1
(MA x B6-Cacna1c)F1 f 3096.0 1419.0   6 579.0 0.458 905.0, 4701.0 -0.36
(MA x B6-Cacna1c)F1 m 3678.0 1666.0   6 680.0 0.453 2130.0, 6564.0 0.04
(MRL x B6-Cacna1c)F1 f 3438.0 1163.0   6 475.0 0.338 1658.0, 4868.0 -0.13
(MRL x B6-Cacna1c)F1 m 3516.0 1549.0   6 632.0 0.44 1112.0, 5818.0 -0.1
(NOD x B6-Cacna1c)F1 f 3103.0 1002.0   6 409.0 0.323 1584.0, 4470.0 -0.36
(NOD x B6-Cacna1c)F1 m 5648.0 913.0   6 373.0 0.162 4772.0, 6728.0 1.65
(NON x B6-Cacna1c)F1 f 3095.0 829.0   5 371.0 0.268 1849.0, 4010.0 -0.36
(NON x B6-Cacna1c)F1 m 2971.0 600.0   6 245.0 0.202 2163.0, 3809.0 -0.54
(NZB x B6-Cacna1c)F1 f 2433.0 853.0   6 348.0 0.351 1010.0, 3588.0 -0.82
(NZB x B6-Cacna1c)F1 m 3209.0 1483.0   5 663.0 0.462 708.0, 4620.0 -0.35
(NZW x B6-Cacna1c)F1 f 1720.0 682.0   5 305.0 0.397 1094.0, 2809.0 -1.3
(NZW x B6-Cacna1c)F1 m 1773.0 592.0   5 265.0 0.334 987.0, 2418.0 -1.52
(PL x B6-Cacna1c)F1 f 3595.0 539.0   5 241.0 0.15 2998.0, 4259.0 -0.02
(PL x B6-Cacna1c)F1 m 3242.0 657.0   6 268.0 0.203 2569.0, 4256.0 -0.32
(RIII x B6-Cacna1c)F1 f 5094.0 802.0   6 327.0 0.157 3706.0, 5762.0 1.0
(RIII x B6-Cacna1c)F1 m 3491.0 1634.0   6 667.0 0.468 1005.0, 4851.0 -0.12
(SEA x B6-Cacna1c)F1 f 7194.0 1520.0   6 620.0 0.211 4618.0, 8885.0 2.43
(SEA x B6-Cacna1c)F1 m 5668.0 2086.0   6 852.0 0.368 4017.0, 9383.0 1.66
(SJL x B6-Cacna1c)F1 f 3160.0 2316.0   6 945.0 0.733 993.0, 7002.0 -0.32
(SJL x B6-Cacna1c)F1 m 3816.0 1070.0   6 437.0 0.281 2311.0, 4889.0 0.15
(SM x B6-Cacna1c)F1 f 6858.0 723.0   5 323.0 0.105 5697.0, 7453.0 2.2
(SM x B6-Cacna1c)F1 m 6284.0 312.0   6 127.0 0.0496 5742.0, 6620.0 2.17
(SWR x B6-Cacna1c)F1 f 3457.0 560.0   6 228.0 0.162 2665.0, 4081.0 -0.12
(SWR x B6-Cacna1c)F1 m 4340.0 1015.0   3 586.0 0.234 3271.0, 5291.0 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 f 1095.7143 495.2809 2070.4055 121.0231
(129S x B6-Cacna1c)F1 m 1654.0 586.0242 2807.2702 500.7298
(AJ x B6-Cacna1c)F1 f 2019.1667 534.9645 3071.9535 966.3799
(AJ x B6-Cacna1c)F1 m 2350.8333 534.9645 3403.6201 1298.0465
(AKR x B6-Cacna1c)F1 f 5247.0 586.0242 6400.2702 4093.7298
(AKR x B6-Cacna1c)F1 m 4718.4 586.0242 5871.6702 3565.1298
(B6 x B6-Cacna1c)F1 f 3836.7857 350.2165 4525.9965 3147.575
(B6 x B6-Cacna1c)F1 m 3249.3333 338.3412 3915.1742 2583.4925
(BALB x B6-Cacna1c)F1 f 4005.6667 534.9645 5058.4535 2952.8799
(BALB x B6-Cacna1c)F1 m 3393.5 534.9645 4446.2868 2340.7132
(BLKS x B6-Cacna1c)F1 f 1941.1667 534.9645 2993.9535 888.3799
(BLKS x B6-Cacna1c)F1 m 2370.6667 534.9645 3423.4535 1317.8799
(BTBR x B6-Cacna1c)F1 f 3203.1429 495.2809 4177.834 2228.4517
(BTBR x B6-Cacna1c)F1 m 2571.5 534.9645 3624.2868 1518.7132
(BUB x B6-Cacna1c)F1 f 4131.0 586.0242 5284.2702 2977.7298
(BUB x B6-Cacna1c)F1 m 4816.8 586.0242 5970.0702 3663.5298
(C3H x B6-Cacna1c)F1 f 3453.0 534.9645 4505.7868 2400.2132
(C3H x B6-Cacna1c)F1 m 3766.2 586.0242 4919.4702 2612.9298
(C58 x B6-Cacna1c)F1 f 5640.1667 534.9645 6692.9535 4587.3799
(C58 x B6-Cacna1c)F1 m 6103.1667 534.9645 7155.9535 5050.3799
(CBA x B6-Cacna1c)F1 f 5510.8 586.0242 6664.0702 4357.5298
(CBA x B6-Cacna1c)F1 m 4903.8 586.0242 6057.0702 3750.5298
(DBA x B6-Cacna1c)F1 f 2282.0 586.0242 3435.2702 1128.7298
(DBA x B6-Cacna1c)F1 m 4086.1667 534.9645 5138.9535 3033.3799
(DDY x B6-Cacna1c)F1 f 2124.5 534.9645 3177.2868 1071.7132
(DDY x B6-Cacna1c)F1 m 2583.8 586.0242 3737.0702 1430.5298
(FVB x B6-Cacna1c)F1 f 5062.3333 534.9645 6115.1201 4009.5465
(FVB x B6-Cacna1c)F1 m 3370.5 534.9645 4423.2868 2317.7132
(ILN x B6-Cacna1c)F1 f 3120.8333 534.9645 4173.6201 2068.0465
(ILN x B6-Cacna1c)F1 m 3173.8333 534.9645 4226.6201 2121.0465
(KK x B6-Cacna1c)F1 f 2684.6667 534.9645 3737.4535 1631.8799
(KK x B6-Cacna1c)F1 m 2606.8333 534.9645 3659.6201 1554.0465
(LG x B6-Cacna1c)F1 f 4324.5 534.9645 5377.2868 3271.7132
(LG x B6-Cacna1c)F1 m 3360.6667 534.9645 4413.4535 2307.8799
(LP x B6-Cacna1c)F1 f 2978.2 586.0242 4131.4702 1824.9298
(LP x B6-Cacna1c)F1 m 2294.0 586.0242 3447.2702 1140.7298
(MA x B6-Cacna1c)F1 f 3096.0 534.9645 4148.7868 2043.2132
(MA x B6-Cacna1c)F1 m 3678.0 534.9645 4730.7868 2625.2132
(MRL x B6-Cacna1c)F1 f 3437.8333 534.9645 4490.6201 2385.0465
(MRL x B6-Cacna1c)F1 m 3515.6667 534.9645 4568.4535 2462.8799
(NOD x B6-Cacna1c)F1 f 3103.3333 534.9645 4156.1201 2050.5465
(NOD x B6-Cacna1c)F1 m 5647.6667 534.9645 6700.4535 4594.8799
(NON x B6-Cacna1c)F1 f 3095.2 586.0242 4248.4702 1941.9298
(NON x B6-Cacna1c)F1 m 2970.8333 534.9645 4023.6201 1918.0465
(NZB x B6-Cacna1c)F1 f 2432.8333 534.9645 3485.6201 1380.0465
(NZB x B6-Cacna1c)F1 m 3208.6 586.0242 4361.8702 2055.3298
(NZW x B6-Cacna1c)F1 f 1720.2 586.0242 2873.4702 566.9298
(NZW x B6-Cacna1c)F1 m 1772.8 586.0242 2926.0702 619.5298
(PL x B6-Cacna1c)F1 f 3595.4 586.0242 4748.6702 2442.1298
(PL x B6-Cacna1c)F1 m 3241.6667 534.9645 4294.4535 2188.8799
(RIII x B6-Cacna1c)F1 f 5094.0 534.9645 6146.7868 4041.2132
(RIII x B6-Cacna1c)F1 m 3491.3333 534.9645 4544.1201 2438.5465
(SEA x B6-Cacna1c)F1 f 7193.5 534.9645 8246.2868 6140.7132
(SEA x B6-Cacna1c)F1 m 5667.8333 534.9645 6720.6201 4615.0465
(SJL x B6-Cacna1c)F1 f 3159.8333 534.9645 4212.6201 2107.0465
(SJL x B6-Cacna1c)F1 m 3816.3333 534.9645 4869.1201 2763.5465
(SM x B6-Cacna1c)F1 f 6857.6 586.0242 8010.8702 5704.3298
(SM x B6-Cacna1c)F1 m 6283.5 534.9645 7336.2868 5230.7132
(SWR x B6-Cacna1c)F1 f 3457.1667 534.9645 4509.9535 2404.3799
(SWR x B6-Cacna1c)F1 m 4339.6667 756.554 5828.532 2850.8013


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 both 1374.8571 383.6429 2129.8497 619.8646
(AJ x B6-Cacna1c)F1 both 2185.0 378.277 2929.4327 1440.5673
(AKR x B6-Cacna1c)F1 both 4982.7 414.3817 5798.1852 4167.2148
(B6 x B6-Cacna1c)F1 both 3543.0595 243.4781 4022.2139 3063.9052
(BALB x B6-Cacna1c)F1 both 3699.5833 378.277 4444.016 2955.1506
(BLKS x B6-Cacna1c)F1 both 2155.9167 378.277 2900.3494 1411.484
(BTBR x B6-Cacna1c)F1 both 2887.3214 364.5168 3604.6747 2169.9681
(BUB x B6-Cacna1c)F1 both 4473.9 414.3817 5289.3852 3658.4148
(C3H x B6-Cacna1c)F1 both 3609.6 396.7403 4390.3676 2828.8324
(C58 x B6-Cacna1c)F1 both 5871.6667 378.277 6616.0994 5127.234
(CBA x B6-Cacna1c)F1 both 5207.3 414.3817 6022.7852 4391.8148
(DBA x B6-Cacna1c)F1 both 3184.0833 396.7403 3964.8509 2403.3157
(DDY x B6-Cacna1c)F1 both 2354.15 396.7403 3134.9176 1573.3824
(FVB x B6-Cacna1c)F1 both 4216.4167 378.277 4960.8494 3471.984
(ILN x B6-Cacna1c)F1 both 3147.3333 378.277 3891.766 2402.9006
(KK x B6-Cacna1c)F1 both 2645.75 378.277 3390.1827 1901.3173
(LG x B6-Cacna1c)F1 both 3842.5833 378.277 4587.016 3098.1506
(LP x B6-Cacna1c)F1 both 2636.1 414.3817 3451.5852 1820.6148
(MA x B6-Cacna1c)F1 both 3387.0 378.277 4131.4327 2642.5673
(MRL x B6-Cacna1c)F1 both 3476.75 378.277 4221.1827 2732.3173
(NOD x B6-Cacna1c)F1 both 4375.5 378.277 5119.9327 3631.0673
(NON x B6-Cacna1c)F1 both 3033.0167 396.7403 3813.7843 2252.2491
(NZB x B6-Cacna1c)F1 both 2820.7167 396.7403 3601.4843 2039.9491
(NZW x B6-Cacna1c)F1 both 1746.5 414.3817 2561.9852 931.0148
(PL x B6-Cacna1c)F1 both 3418.5333 396.7403 4199.3009 2637.7657
(RIII x B6-Cacna1c)F1 both 4292.6667 378.277 5037.0994 3548.234
(SEA x B6-Cacna1c)F1 both 6430.6667 378.277 7175.0994 5686.234
(SJL x B6-Cacna1c)F1 both 3488.0833 378.277 4232.516 2743.6506
(SM x B6-Cacna1c)F1 both 6570.55 396.7403 7351.3176 5789.7824
(SWR x B6-Cacna1c)F1 both 3898.4167 463.2928 4810.1568 2986.6765




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA