Project measure / variable:   Palmer4   pct_light

ID, description, units MPD:59311   pct_light   percentage of time spent in light vs dark side of apparatus   [%]  
Data set, strains Palmer4   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
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  STRAIN COMPARISON PLOT
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Palmer4 - percentage of time spent in light vs dark side of apparatus



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means34.8   % 39.0   %
Median of the strain means35.2   % 39.9   %
SD of the strain means± 5.22 ± 7.77
Coefficient of variation (CV)0.150 0.200
Min–max range of strain means23.8   –   42.1   % 26.1   –   55.2   %
Mean sample size per strain5.6   mice 5.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1321.7466 1321.7466 10.9924 0.001
strain 29 9875.0946 340.5205 2.832 < 0.0001
sex:strain 29 4127.911 142.3418 1.1838 0.2422
Residuals 284 34148.6367 120.2417


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Cacna1c)F1 f 35.5 9.9   7 3.74 0.279 26.0, 53.5 0.13
(129S x B6-Cacna1c)F1 m 44.2 11.8   3 6.79 0.266 32.2, 55.7 0.67
(AJ x B6-Cacna1c)F1 f 33.4 11.8   6 4.83 0.354 16.6, 47.5 -0.28
(AJ x B6-Cacna1c)F1 m 32.1 4.07   6 1.66 0.127 27.9, 36.5 -0.88
(AKR x B6-Cacna1c)F1 f 31.0 10.7   5 4.79 0.345 18.8, 45.2 -0.74
(AKR x B6-Cacna1c)F1 m 40.2 18.6   5 8.33 0.464 18.5, 63.0 0.16
(B6 x B6-Cacna1c)F1 f 34.9 9.96   15 2.57 0.285 14.7, 55.6 0.01
(B6 x B6-Cacna1c)F1 m 36.1 10.0   14 2.67 0.277 18.9, 50.6 -0.37
(BALB x B6-Cacna1c)F1 f 28.7 6.91   6 2.82 0.24 17.0, 36.3 -1.18
(BALB x B6-Cacna1c)F1 m 26.3 5.23   5 2.34 0.199 22.4, 34.9 -1.63
(BLKS x B6-Cacna1c)F1 f 41.9 11.6   5 5.19 0.276 28.0, 60.2 1.35
(BLKS x B6-Cacna1c)F1 m 38.5 12.1   6 4.93 0.314 24.1, 58.2 -0.06
(BTBR x B6-Cacna1c)F1 f 32.1 7.24   6 2.96 0.226 21.4, 41.0 -0.53
(BTBR x B6-Cacna1c)F1 m 33.1 8.76   6 3.58 0.265 24.5, 45.1 -0.75
(BUB x B6-Cacna1c)F1 f 24.9 7.54   5 3.37 0.302 16.4, 32.9 -1.9
(BUB x B6-Cacna1c)F1 m 27.6 9.76   5 4.36 0.354 19.6, 42.9 -1.46
(C3H x B6-Cacna1c)F1 f 25.6 11.6   6 4.72 0.452 13.8, 46.2 -1.77
(C3H x B6-Cacna1c)F1 m 50.0 17.5   5 7.83 0.35 29.1, 69.9 1.42
(C58 x B6-Cacna1c)F1 f 36.0 8.53   6 3.48 0.237 22.1, 44.1 0.22
(C58 x B6-Cacna1c)F1 m 53.4 15.2   6 6.2 0.284 40.0, 83.2 1.86
(CBA x B6-Cacna1c)F1 f 37.1 8.52   4 4.26 0.23 27.0, 47.8 0.43
(CBA x B6-Cacna1c)F1 m 43.8 4.44   5 1.99 0.101 38.6, 48.5 0.62
(DBA x B6-Cacna1c)F1 f 23.8 15.9   5 7.11 0.668 7.1, 39.6 -2.12
(DBA x B6-Cacna1c)F1 m 26.1 7.52   6 3.07 0.288 17.4, 34.3 -1.65
(DDY x B6-Cacna1c)F1 f 35.8 4.42   5 1.98 0.123 31.1, 40.8 0.18
(DDY x B6-Cacna1c)F1 m 43.6 6.96   5 3.11 0.16 35.8, 52.5 0.6
(FVB x B6-Cacna1c)F1 f 40.9 3.2   6 1.31 0.0784 36.9, 44.6 1.16
(FVB x B6-Cacna1c)F1 m 44.1 6.05   6 2.47 0.137 37.4, 53.3 0.66
(ILN x B6-Cacna1c)F1 f 25.8 11.2   6 4.56 0.433 13.2, 37.7 -1.73
(ILN x B6-Cacna1c)F1 m 29.2 13.4   6 5.46 0.459 13.9, 41.6 -1.25
(KK x B6-Cacna1c)F1 f 39.5 2.21   6 0.901 0.0559 36.3, 42.1 0.89
(KK x B6-Cacna1c)F1 m 29.8 3.51   5 1.57 0.118 24.5, 33.6 -1.18
(LG x B6-Cacna1c)F1 f 37.7 24.5   5 11.0 0.65 10.7, 74.1 0.55
(LG x B6-Cacna1c)F1 m 55.2 32.8   6 13.4 0.595 10.5, 87.3 2.09
(LP x B6-Cacna1c)F1 f 33.7 7.74   5 3.46 0.23 25.3, 45.7 -0.22
(LP x B6-Cacna1c)F1 m 34.4 7.28   5 3.26 0.211 22.5, 41.7 -0.59
(MA x B6-Cacna1c)F1 f 34.6 11.0   6 4.51 0.319 23.8, 48.0 -0.05
(MA x B6-Cacna1c)F1 m 41.4 7.13   6 2.91 0.172 28.9, 48.6 0.31
(MRL x B6-Cacna1c)F1 f 37.0 13.1   6 5.34 0.353 14.1, 50.3 0.41
(MRL x B6-Cacna1c)F1 m 37.0 22.1   5 9.9 0.599 9.8, 71.0 -0.25
(NOD x B6-Cacna1c)F1 f 40.2 7.57   5 3.39 0.188 29.4, 49.3 1.03
(NOD x B6-Cacna1c)F1 m 39.5 6.04   6 2.47 0.153 30.6, 47.8 0.07
(NON x B6-Cacna1c)F1 f 40.5 4.98   5 2.23 0.123 36.0, 49.0 1.08
(NON x B6-Cacna1c)F1 m 45.9 13.3   6 5.42 0.289 27.1, 63.7 0.89
(NZB x B6-Cacna1c)F1 f 32.8 14.8   5 6.62 0.452 11.7, 51.1 -0.39
(NZB x B6-Cacna1c)F1 m 31.8 2.16   5 0.965 0.0678 29.7, 34.9 -0.92
(NZW x B6-Cacna1c)F1 f 33.5 12.2   5 5.45 0.364 23.1, 54.3 -0.26
(NZW x B6-Cacna1c)F1 m 31.9 6.89   5 3.08 0.216 23.4, 41.1 -0.91
(PL x B6-Cacna1c)F1 f 40.3 7.77   5 3.47 0.193 30.0, 50.9 1.05
(PL x B6-Cacna1c)F1 m 44.0 5.09   5 2.28 0.116 38.6, 49.5 0.65
(RIII x B6-Cacna1c)F1 f 39.6 7.9   6 3.23 0.199 31.8, 50.4 0.91
(RIII x B6-Cacna1c)F1 m 41.0 4.2   6 1.72 0.103 37.3, 47.3 0.26
(SEA x B6-Cacna1c)F1 f 31.8 10.5   6 4.27 0.329 19.3, 43.6 -0.58
(SEA x B6-Cacna1c)F1 m 48.3 3.84   5 1.72 0.0794 44.0, 54.0 1.2
(SJL x B6-Cacna1c)F1 f 42.1 6.65   6 2.72 0.158 34.4, 51.3 1.39
(SJL x B6-Cacna1c)F1 m 41.4 9.36   6 3.82 0.226 25.9, 50.1 0.31
(SM x B6-Cacna1c)F1 f 34.4 9.8   5 4.38 0.285 17.2, 40.7 -0.08
(SM x B6-Cacna1c)F1 m 35.4 10.3   6 4.19 0.29 18.9, 49.6 -0.46
(SWR x B6-Cacna1c)F1 f 40.2 2.78   6 1.13 0.069 36.2, 43.0 1.03
(SWR x B6-Cacna1c)F1 m 43.3 4.33   3 2.5 0.0999 38.4, 46.5 0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 f 35.5143 4.1446 43.6722 27.3563
(129S x B6-Cacna1c)F1 m 44.2 6.3309 56.6615 31.7385
(AJ x B6-Cacna1c)F1 f 33.4333 4.4766 42.2449 24.6217
(AJ x B6-Cacna1c)F1 m 32.1167 4.4766 40.9283 23.3051
(AKR x B6-Cacna1c)F1 f 30.98 4.9039 40.6326 21.3274
(AKR x B6-Cacna1c)F1 m 40.16 4.9039 49.8126 30.5074
(B6 x B6-Cacna1c)F1 f 34.9 2.8313 40.4729 29.3271
(B6 x B6-Cacna1c)F1 m 36.1143 2.9306 41.8828 30.3457
(BALB x B6-Cacna1c)F1 f 28.7333 4.4766 37.5449 19.9217
(BALB x B6-Cacna1c)F1 m 26.32 4.9039 35.9726 16.6674
(BLKS x B6-Cacna1c)F1 f 41.94 4.9039 51.5926 32.2874
(BLKS x B6-Cacna1c)F1 m 38.5167 4.4766 47.3283 29.7051
(BTBR x B6-Cacna1c)F1 f 32.0833 4.4766 40.8949 23.2717
(BTBR x B6-Cacna1c)F1 m 33.1 4.4766 41.9116 24.2884
(BUB x B6-Cacna1c)F1 f 24.94 4.9039 34.5926 15.2874
(BUB x B6-Cacna1c)F1 m 27.58 4.9039 37.2326 17.9274
(C3H x B6-Cacna1c)F1 f 25.5833 4.4766 34.3949 16.7717
(C3H x B6-Cacna1c)F1 m 50.0 4.9039 59.6526 40.3474
(C58 x B6-Cacna1c)F1 f 36.0333 4.4766 44.8449 27.2217
(C58 x B6-Cacna1c)F1 m 53.4333 4.4766 62.2449 44.6217
(CBA x B6-Cacna1c)F1 f 37.1 5.4827 47.892 26.308
(CBA x B6-Cacna1c)F1 m 43.82 4.9039 53.4726 34.1674
(DBA x B6-Cacna1c)F1 f 23.78 4.9039 33.4326 14.1274
(DBA x B6-Cacna1c)F1 m 26.0667 4.4766 34.8783 17.2551
(DDY x B6-Cacna1c)F1 f 35.78 4.9039 45.4326 26.1274
(DDY x B6-Cacna1c)F1 m 43.6 4.9039 53.2526 33.9474
(FVB x B6-Cacna1c)F1 f 40.85 4.4766 49.6616 32.0384
(FVB x B6-Cacna1c)F1 m 44.15 4.4766 52.9616 35.3384
(ILN x B6-Cacna1c)F1 f 25.8 4.4766 34.6116 16.9884
(ILN x B6-Cacna1c)F1 m 29.1667 4.4766 37.9783 20.3551
(KK x B6-Cacna1c)F1 f 39.4833 4.4766 48.2949 30.6717
(KK x B6-Cacna1c)F1 m 29.82 4.9039 39.4726 20.1674
(LG x B6-Cacna1c)F1 f 37.72 4.9039 47.3726 28.0674
(LG x B6-Cacna1c)F1 m 55.1667 4.4766 63.9783 46.3551
(LP x B6-Cacna1c)F1 f 33.7 4.9039 43.3526 24.0474
(LP x B6-Cacna1c)F1 m 34.44 4.9039 44.0926 24.7874
(MA x B6-Cacna1c)F1 f 34.6333 4.4766 43.4449 25.8217
(MA x B6-Cacna1c)F1 m 41.3833 4.4766 50.1949 32.5717
(MRL x B6-Cacna1c)F1 f 37.0167 4.4766 45.8283 28.2051
(MRL x B6-Cacna1c)F1 m 37.0 4.9039 46.6526 27.3474
(NOD x B6-Cacna1c)F1 f 40.2 4.9039 49.8526 30.5474
(NOD x B6-Cacna1c)F1 m 39.5167 4.4766 48.3283 30.7051
(NON x B6-Cacna1c)F1 f 40.46 4.9039 50.1126 30.8074
(NON x B6-Cacna1c)F1 m 45.9167 4.4766 54.7283 37.1051
(NZB x B6-Cacna1c)F1 f 32.76 4.9039 42.4126 23.1074
(NZB x B6-Cacna1c)F1 m 31.84 4.9039 41.4926 22.1874
(NZW x B6-Cacna1c)F1 f 33.5 4.9039 43.1526 23.8474
(NZW x B6-Cacna1c)F1 m 31.94 4.9039 41.5926 22.2874
(PL x B6-Cacna1c)F1 f 40.3 4.9039 49.9526 30.6474
(PL x B6-Cacna1c)F1 m 44.04 4.9039 53.6926 34.3874
(RIII x B6-Cacna1c)F1 f 39.65 4.4766 48.4616 30.8384
(RIII x B6-Cacna1c)F1 m 40.9833 4.4766 49.7949 32.1717
(SEA x B6-Cacna1c)F1 f 31.7833 4.4766 40.5949 22.9717
(SEA x B6-Cacna1c)F1 m 48.34 4.9039 57.9926 38.6874
(SJL x B6-Cacna1c)F1 f 42.0667 4.4766 50.8783 33.2551
(SJL x B6-Cacna1c)F1 m 41.4167 4.4766 50.2283 32.6051
(SM x B6-Cacna1c)F1 f 34.36 4.9039 44.0126 24.7074
(SM x B6-Cacna1c)F1 m 35.3833 4.4766 44.1949 26.5717
(SWR x B6-Cacna1c)F1 f 40.25 4.4766 49.0616 31.4384
(SWR x B6-Cacna1c)F1 m 43.3333 6.3309 55.7948 30.8719


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 both 39.8571 3.7834 47.3043 32.41
(AJ x B6-Cacna1c)F1 both 32.775 3.1655 39.0057 26.5443
(AKR x B6-Cacna1c)F1 both 35.57 3.4676 42.3954 28.7446
(B6 x B6-Cacna1c)F1 both 35.5071 2.0374 39.5176 31.4967
(BALB x B6-Cacna1c)F1 both 27.5267 3.32 34.0615 20.9918
(BLKS x B6-Cacna1c)F1 both 40.2283 3.32 46.7632 33.6935
(BTBR x B6-Cacna1c)F1 both 32.5917 3.1655 38.8224 26.3609
(BUB x B6-Cacna1c)F1 both 26.26 3.4676 33.0854 19.4346
(C3H x B6-Cacna1c)F1 both 37.7917 3.32 44.3265 31.2568
(C58 x B6-Cacna1c)F1 both 44.7333 3.1655 50.9641 38.5026
(CBA x B6-Cacna1c)F1 both 40.46 3.6779 47.6995 33.2205
(DBA x B6-Cacna1c)F1 both 24.9233 3.32 31.4582 18.3885
(DDY x B6-Cacna1c)F1 both 39.69 3.4676 46.5154 32.8646
(FVB x B6-Cacna1c)F1 both 42.5 3.1655 48.7307 36.2693
(ILN x B6-Cacna1c)F1 both 27.4833 3.1655 33.7141 21.2526
(KK x B6-Cacna1c)F1 both 34.6517 3.32 41.1865 28.1168
(LG x B6-Cacna1c)F1 both 46.4433 3.32 52.9782 39.9085
(LP x B6-Cacna1c)F1 both 34.07 3.4676 40.8954 27.2446
(MA x B6-Cacna1c)F1 both 38.0083 3.1655 44.2391 31.7776
(MRL x B6-Cacna1c)F1 both 37.0083 3.32 43.5432 30.4735
(NOD x B6-Cacna1c)F1 both 39.8583 3.32 46.3932 33.3235
(NON x B6-Cacna1c)F1 both 43.1883 3.32 49.7232 36.6535
(NZB x B6-Cacna1c)F1 both 32.3 3.4676 39.1254 25.4746
(NZW x B6-Cacna1c)F1 both 32.72 3.4676 39.5454 25.8946
(PL x B6-Cacna1c)F1 both 42.17 3.4676 48.9954 35.3446
(RIII x B6-Cacna1c)F1 both 40.3167 3.1655 46.5474 34.0859
(SEA x B6-Cacna1c)F1 both 40.0617 3.32 46.5965 33.5268
(SJL x B6-Cacna1c)F1 both 41.7417 3.1655 47.9724 35.5109
(SM x B6-Cacna1c)F1 both 34.8717 3.32 41.4065 28.3368
(SWR x B6-Cacna1c)F1 both 41.7917 3.8769 49.4227 34.1606




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA