Phenotype measure

ID, description, units MPD:59222   d2_context   percentage of time freezing to context on day 2   [%]
Data set, strains Palmer3   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure fear conditioning test
Ontology mappings


  STRAIN COMPARISON PLOT
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Palmer3 - percentage of time freezing to context on day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means16.4   % 7.77   %
Median of the strain means13.5   % 4.26   %
SD of the strain means± 13.0 ± 8.72
Coefficient of variation (CV)0.790 1.12
Min–max range of strain means0.950   –   44.9   % 0.720   –   34.5   %
Mean sample size per strain5.3   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6033.1349 6033.1349 21.2104 < 0.0001
strain 28 34371.9352 1227.5691 4.3157 < 0.0001
sex:strain 28 7850.3478 280.3696 0.9857 0.4902
Residuals 254 72248.3651 284.4424


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Tcf7l2)F1 f 11.2 14.2   6 5.81 1.27 0.2, 30.3 -0.4
(129S x B6-Tcf7l2)F1 m 20.2 22.8   5 10.2 1.13 0.0, 46.8 1.43
(AJ x B6-Tcf7l2)F1 f 35.6 34.1   6 13.9 0.96 0.5, 81.1 1.48
(AJ x B6-Tcf7l2)F1 m 8.4 8.09   4 4.05 0.964 1.3, 17.8 0.07
(AKR x B6-Tcf7l2)F1 f 10.7 12.5   4 6.25 1.17 1.6, 28.7 -0.44
(AKR x B6-Tcf7l2)F1 m 1.3 0.0   1   0.0 0.0 1.3, 1.3 -0.74
(B6 x B6-Tcf7l2)F1 f 15.0 9.96   9 3.32 0.663 0.7, 30.1 -0.11
(B6 x B6-Tcf7l2)F1 m 4.14 3.33   9 1.11 0.803 0.5, 10.3 -0.42
(BALB x B6-Tcf7l2)F1 f 13.2 21.5   5 9.62 1.63 0.4, 51.3 -0.25
(BALB x B6-Tcf7l2)F1 m 15.8 30.8   4 15.4 1.95 0.0, 61.9 0.92
(BLKS x B6-Tcf7l2)F1 f 15.8 6.8   5 3.04 0.429 5.7, 24.6 -0.05
(BLKS x B6-Tcf7l2)F1 m 4.62 5.58   5 2.5 1.21 0.5, 14.2 -0.36
(BTBR x B6-Tcf7l2)F1 f 13.9 6.28   5 2.81 0.451 4.6, 19.9 -0.2
(BTBR x B6-Tcf7l2)F1 m 6.26 4.87   5 2.18 0.778 0.5, 12.6 -0.17
(BUB x B6-Tcf7l2)F1 f 31.5 30.0   5 13.4 0.951 5.0, 80.8 1.16
(BUB x B6-Tcf7l2)F1 m 12.0 17.6   5 7.86 1.46 0.2, 41.8 0.49
(C3H x B6-Tcf7l2)F1 f 6.97 15.0   7 5.67 2.15 0.0, 40.8 -0.73
(C3H x B6-Tcf7l2)F1 m 4.24 3.8   5 1.7 0.896 0.2, 9.3 -0.4
(C57L x B6-Tcf7l2)F1 f 3.7 4.95   4 2.47 1.34 0.0, 11.0 -0.98
(C57L x B6-Tcf7l2)F1 m 4.28 5.71   5 2.56 1.34 0.0, 13.7 -0.4
(C58 x B6-Tcf7l2)F1 f 9.58 8.48   4 4.24 0.886 1.6, 19.8 -0.53
(C58 x B6-Tcf7l2)F1 m 1.25 1.18   4 0.592 0.948 0.4, 3.0 -0.75
(CBA x B6-Tcf7l2)F1 f 8.8 9.62   4 4.81 1.09 1.8, 23.0 -0.59
(CBA x B6-Tcf7l2)F1 m 1.75 1.13   6 0.462 0.647 0.5, 3.6 -0.69
(DBA x B6-Tcf7l2)F1 f 22.2 21.3   5 9.54 0.959 0.2, 43.8 0.44
(DBA x B6-Tcf7l2)F1 m 0.72 1.14   5 0.511 1.59 0.0, 2.7 -0.81
(DDY x B6-Tcf7l2)F1 f 1.22 1.77   5 0.792 1.45 0.0, 4.3 -1.17
(DDY x B6-Tcf7l2)F1 m 1.06 1.04   5 0.465 0.982 0.0, 2.7 -0.77
(FVB x B6-Tcf7l2)F1 f 13.8 26.7   4 13.4 1.94 0.0, 53.9 -0.2
(FVB x B6-Tcf7l2)F1 m 1.57 2.36   7 0.891 1.5 0.0, 6.8 -0.71
(ILN x B6-Tcf7l2)F1 f 17.1 24.4   4 12.2 1.43 3.9, 53.6 0.05
(ILN x B6-Tcf7l2)F1 m 16.1 21.4   9 7.12 1.32 0.0, 56.9 0.96
(KK x B6-Tcf7l2)F1 f 14.5 15.7   6 6.4 1.08 0.2, 35.1 -0.15
(KK x B6-Tcf7l2)F1 m 2.1 1.22   3 0.702 0.579 0.7, 2.9 -0.65
(LP x B6-Tcf7l2)F1 f 38.5 34.6   6 14.1 0.899 0.0, 86.1 1.7
(LP x B6-Tcf7l2)F1 m 5.25 0.919   2   0.65 0.175 4.6, 5.9 -0.29
(MA x B6-Tcf7l2)F1 f 12.5 22.2   5 9.92 1.77 0.5, 51.8 -0.3
(MA x B6-Tcf7l2)F1 m 20.4 20.6   5 9.2 1.01 4.1, 47.0 1.45
(MRL x B6-Tcf7l2)F1 f 2.02 3.48   5 1.56 1.72 0.0, 8.2 -1.11
(MRL x B6-Tcf7l2)F1 m 0.94 1.1   5 0.493 1.17 0.0, 2.7 -0.78
(NOD x B6-Tcf7l2)F1 f 44.9 32.7   6 13.4 0.728 4.3, 90.6 2.19
(NOD x B6-Tcf7l2)F1 m 15.8 24.7   7 9.33 1.56 0.5, 61.6 0.92
(NON x B6-Tcf7l2)F1 f 8.99 11.1   7 4.2 1.24 0.7, 29.4 -0.57
(NON x B6-Tcf7l2)F1 m 2.99 3.61   8 1.28 1.21 0.0, 9.8 -0.55
(NZB x B6-Tcf7l2)F1 f 42.9 27.9   8 9.85 0.649 10.9, 91.6 2.04
(NZB x B6-Tcf7l2)F1 m 34.5 29.6   9 9.85 0.857 8.7, 98.8 3.06
(NZW x B6-Tcf7l2)F1 f 24.2 16.8   4 8.38 0.691 2.0, 42.7 0.6
(NZW x B6-Tcf7l2)F1 m 6.92 8.53   5 3.81 1.23 0.4, 21.4 -0.1
(PL x B6-Tcf7l2)F1 f 27.4 18.6   6 7.59 0.68 2.7, 50.0 0.84
(PL x B6-Tcf7l2)F1 m 3.8 4.18   4 2.09 1.1 0.9, 10.0 -0.45
(RIII x B6-Tcf7l2)F1 f 0.95 1.24   6 0.505 1.3 0.0, 2.7 -1.19
(RIII x B6-Tcf7l2)F1 m 1.32 1.45   4 0.723 1.09 0.0, 2.9 -0.74
(SEA x B6-Tcf7l2)F1 f 3.14 1.34   5 0.598 0.426 0.9, 4.1 -1.02
(SEA x B6-Tcf7l2)F1 m 0.729 0.818   7 0.309 1.12 0.0, 2.0 -0.81
(SJL x B6-Tcf7l2)F1 f 35.8 22.5   6 9.18 0.629 6.4, 74.2 1.49
(SJL x B6-Tcf7l2)F1 m 27.8 23.6   4 11.8 0.851 1.4, 52.3 2.3
(SM x B6-Tcf7l2)F1 f 4.48 6.4   5 2.86 1.43 0.2, 15.7 -0.92
(SM x B6-Tcf7l2)F1 m 4.62 5.45   4 2.72 1.18 0.0, 11.7 -0.36
(SWR x B6-Tcf7l2)F1 f 2.5 1.82   5 0.815 0.729 0.0, 5.0 -1.07
(SWR x B6-Tcf7l2)F1 m 2.2 2.36   4 1.18 1.07 0.5, 5.7 -0.64


  LEAST SQUARES MEANS (ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Tcf7l2)F1 f 11.2333 6.8853 24.7928 0.0
(129S x B6-Tcf7l2)F1 m 20.24 7.5424 35.0937 5.3863
(AJ x B6-Tcf7l2)F1 f 35.55 6.8853 49.1095 21.9905
(AJ x B6-Tcf7l2)F1 m 8.4 8.4327 25.0069 0.0
(B6 x B6-Tcf7l2)F1 f 15.0222 5.6218 26.0935 3.9509
(B6 x B6-Tcf7l2)F1 m 4.1444 5.6218 15.2157 0.0
(BALB x B6-Tcf7l2)F1 f 13.18 7.5424 28.0337 0.0
(BALB x B6-Tcf7l2)F1 m 15.75 8.4327 32.3569 0.0
(BLKS x B6-Tcf7l2)F1 f 15.84 7.5424 30.6937 0.9863
(BLKS x B6-Tcf7l2)F1 m 4.62 7.5424 19.4737 0.0
(BTBR x B6-Tcf7l2)F1 f 13.94 7.5424 28.7937 0.0
(BTBR x B6-Tcf7l2)F1 m 6.26 7.5424 21.1137 0.0
(BUB x B6-Tcf7l2)F1 f 31.5 7.5424 46.3537 16.6463
(BUB x B6-Tcf7l2)F1 m 12.0 7.5424 26.8537 0.0
(C3H x B6-Tcf7l2)F1 f 6.9714 6.3745 19.5251 0.0
(C3H x B6-Tcf7l2)F1 m 4.24 7.5424 19.0937 0.0
(C57L x B6-Tcf7l2)F1 f 3.7 8.4327 20.3069 0.0
(C57L x B6-Tcf7l2)F1 m 4.28 7.5424 19.1337 0.0
(C58 x B6-Tcf7l2)F1 f 9.575 8.4327 26.1819 0.0
(C58 x B6-Tcf7l2)F1 m 1.25 8.4327 17.8569 0.0
(CBA x B6-Tcf7l2)F1 f 8.8 8.4327 25.4069 0.0
(CBA x B6-Tcf7l2)F1 m 1.75 6.8853 15.3095 0.0
(DBA x B6-Tcf7l2)F1 f 22.24 7.5424 37.0937 7.3863
(DBA x B6-Tcf7l2)F1 m 0.72 7.5424 15.5737 0.0
(DDY x B6-Tcf7l2)F1 f 1.22 7.5424 16.0737 0.0
(DDY x B6-Tcf7l2)F1 m 1.06 7.5424 15.9137 0.0
(FVB x B6-Tcf7l2)F1 f 13.8 8.4327 30.4069 0.0
(FVB x B6-Tcf7l2)F1 m 1.5714 6.3745 14.1251 0.0
(ILN x B6-Tcf7l2)F1 f 17.1 8.4327 33.7069 0.4931
(ILN x B6-Tcf7l2)F1 m 16.1333 5.6218 27.2046 5.062
(KK x B6-Tcf7l2)F1 f 14.5 6.8853 28.0595 0.9405
(KK x B6-Tcf7l2)F1 m 2.1 9.7373 21.276 0.0
(LP x B6-Tcf7l2)F1 f 38.4833 6.8853 52.0428 24.9238
(LP x B6-Tcf7l2)F1 m 5.25 11.9257 28.7358 0.0
(MA x B6-Tcf7l2)F1 f 12.52 7.5424 27.3737 0.0
(MA x B6-Tcf7l2)F1 m 20.44 7.5424 35.2937 5.5863
(MRL x B6-Tcf7l2)F1 f 2.02 7.5424 16.8737 0.0
(MRL x B6-Tcf7l2)F1 m 0.94 7.5424 15.7937 0.0
(NOD x B6-Tcf7l2)F1 f 44.9167 6.8853 58.4762 31.3572
(NOD x B6-Tcf7l2)F1 m 15.8286 6.3745 28.3822 3.2749
(NON x B6-Tcf7l2)F1 f 8.9857 6.3745 21.5394 0.0
(NON x B6-Tcf7l2)F1 m 2.9875 5.9628 14.7304 0.0
(NZB x B6-Tcf7l2)F1 f 42.95 5.9628 54.6929 31.2071
(NZB x B6-Tcf7l2)F1 m 34.5 5.6218 45.5713 23.4287
(NZW x B6-Tcf7l2)F1 f 24.25 8.4327 40.8569 7.6431
(NZW x B6-Tcf7l2)F1 m 6.92 7.5424 21.7737 0.0
(PL x B6-Tcf7l2)F1 f 27.3667 6.8853 40.9262 13.8072
(PL x B6-Tcf7l2)F1 m 3.8 8.4327 20.4069 0.0
(RIII x B6-Tcf7l2)F1 f 0.95 6.8853 14.5095 0.0
(RIII x B6-Tcf7l2)F1 m 1.325 8.4327 17.9319 0.0
(SEA x B6-Tcf7l2)F1 f 3.14 7.5424 17.9937 0.0
(SEA x B6-Tcf7l2)F1 m 0.7286 6.3745 13.2822 0.0
(SJL x B6-Tcf7l2)F1 f 35.75 6.8853 49.3095 22.1905
(SJL x B6-Tcf7l2)F1 m 27.8 8.4327 44.4069 11.1931
(SM x B6-Tcf7l2)F1 f 4.48 7.5424 19.3337 0.0
(SM x B6-Tcf7l2)F1 m 4.625 8.4327 21.2319 0.0
(SWR x B6-Tcf7l2)F1 f 2.5 7.5424 17.3537 0.0
(SWR x B6-Tcf7l2)F1 m 2.2 8.4327 18.8069 0.0


  LEAST SQUARES MEANS (ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Tcf7l2)F1 both 15.7367 5.1063 25.7927 5.6807
(AJ x B6-Tcf7l2)F1 both 21.975 5.4433 32.6947 11.2553
(B6 x B6-Tcf7l2)F1 both 9.5833 3.9752 17.4119 1.7547
(BALB x B6-Tcf7l2)F1 both 14.465 5.6568 25.6053 3.3247
(BLKS x B6-Tcf7l2)F1 both 10.23 5.3333 20.7331 0.0
(BTBR x B6-Tcf7l2)F1 both 10.1 5.3333 20.6031 0.0
(BUB x B6-Tcf7l2)F1 both 21.75 5.3333 32.2531 11.2469
(C3H x B6-Tcf7l2)F1 both 5.6057 4.9377 15.3297 0.0
(C57L x B6-Tcf7l2)F1 both 3.99 5.6568 15.1303 0.0
(C58 x B6-Tcf7l2)F1 both 5.4125 5.9628 17.1554 0.0
(CBA x B6-Tcf7l2)F1 both 5.275 5.4433 15.9947 0.0
(DBA x B6-Tcf7l2)F1 both 11.48 5.3333 21.9831 0.9769
(DDY x B6-Tcf7l2)F1 both 1.14 5.3333 11.6431 0.0
(FVB x B6-Tcf7l2)F1 both 7.6857 5.2855 18.0947 0.0
(ILN x B6-Tcf7l2)F1 both 16.6167 5.0674 26.5962 6.6371
(KK x B6-Tcf7l2)F1 both 8.3 5.9628 20.0429 0.0
(LP x B6-Tcf7l2)F1 both 21.8667 6.8853 35.4262 8.3072
(MA x B6-Tcf7l2)F1 both 16.48 5.3333 26.9831 5.9769
(MRL x B6-Tcf7l2)F1 both 1.48 5.3333 11.9831 0.0
(NOD x B6-Tcf7l2)F1 both 30.3726 4.6915 39.6119 21.1334
(NON x B6-Tcf7l2)F1 both 5.9866 4.3643 14.5815 0.0
(NZB x B6-Tcf7l2)F1 both 38.725 4.0976 46.7945 30.6555
(NZW x B6-Tcf7l2)F1 both 15.585 5.6568 26.7253 4.4447
(PL x B6-Tcf7l2)F1 both 15.5833 5.4433 26.3031 4.8636
(RIII x B6-Tcf7l2)F1 both 1.1375 5.4433 11.8572 0.0
(SEA x B6-Tcf7l2)F1 both 1.9343 4.9377 11.6583 0.0
(SJL x B6-Tcf7l2)F1 both 31.775 5.4433 42.4947 21.0553
(SM x B6-Tcf7l2)F1 both 4.5525 5.6568 15.6928 0.0
(SWR x B6-Tcf7l2)F1 both 2.35 5.6568 13.4903 0.0