Project measure / variable:   Palmer3   d1_tone

ID, description, units MPD:59221   d1_tone   percentage of time freezing during tone presentation on day 1   [%]  
Data set, strains Palmer3   F1 Tcf7l2   30 strains     sex: both     age: 7-14wks
Procedure fear conditioning test
Ontology mappings

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  STRAIN COMPARISON PLOT
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Palmer3 - percentage of time freezing during tone presentation on day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means1.78   % 2.03   %
Median of the strain means1.27   % 1.66   %
SD of the strain means± 1.54 ± 2.20
Coefficient of variation (CV)0.866 1.08
Min–max range of strain means0   –   8.05   % 0   –   10.7   %
Mean sample size per strain5.4   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9.7777 9.7777 0.679 0.4107
strain 28 1271.4207 45.4079 3.1533 < 0.0001
sex:strain 28 166.4548 5.9448 0.4128 0.9967
Residuals 256 3686.4073 14.4


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Tcf7l2)F1 f 1.19 1.43   6 0.585 1.2 -0.38
(129S x B6-Tcf7l2)F1 m 1.88 2.45   5 1.1 1.31 -0.07
(AJ x B6-Tcf7l2)F1 f 0.525 0.913   6 0.373 1.74 -0.81
(AJ x B6-Tcf7l2)F1 m 1.79 1.42   4 0.709 0.792 -0.11
(AKR x B6-Tcf7l2)F1 f 1.12 0.859   4 0.43 0.765 -0.43
(AKR x B6-Tcf7l2)F1 m 0.45 0.0   1   0.0 0.0 0.45, 0.45 -0.72
(B6 x B6-Tcf7l2)F1 f 4.17 6.32   9 2.11 1.51 1.55
(B6 x B6-Tcf7l2)F1 m 4.05 5.13   9 1.71 1.27 0.92
(BALB x B6-Tcf7l2)F1 f 2.06 2.39   5 1.07 1.16 0.45, 5.8 0.18
(BALB x B6-Tcf7l2)F1 m 4.24 8.48   4 4.24 2.0 1.0
(BLKS x B6-Tcf7l2)F1 f 0.632 1.18   5 0.527 1.86 -0.74
(BLKS x B6-Tcf7l2)F1 m 0.36 0.587   5 0.262 1.63 -0.76
(BTBR x B6-Tcf7l2)F1 f 2.09 2.81   6 1.15 1.35 0.2
(BTBR x B6-Tcf7l2)F1 m 0.358 0.583   5 0.261 1.63 -0.76
(BUB x B6-Tcf7l2)F1 f 0.358 0.583   5 0.261 1.63 -0.92
(BUB x B6-Tcf7l2)F1 m 2.5 5.09   5 2.28 2.04 0.21
(C3H x B6-Tcf7l2)F1 f 1.02 2.32   7 0.875 2.27 -0.49
(C3H x B6-Tcf7l2)F1 m 1.98 2.52   5 1.13 1.27 -0.02
(C57L x B6-Tcf7l2)F1 f 0.0 0.0   4 0.0 0.0 -1.15
(C57L x B6-Tcf7l2)F1 m 1.16 1.47   5 0.656 1.26 -0.4
(C58 x B6-Tcf7l2)F1 f 2.68 3.28   4 1.64 1.22 0.58
(C58 x B6-Tcf7l2)F1 m 1.45 1.76   4 0.881 1.21 -0.27
(CBA x B6-Tcf7l2)F1 f 2.35 1.69   4 0.843 0.718 0.45, 4.47 0.37
(CBA x B6-Tcf7l2)F1 m 1.19 0.964   6 0.394 0.808 -0.38
(DBA x B6-Tcf7l2)F1 f 1.52 0.675   5 0.302 0.445 0.89, 2.23 -0.17
(DBA x B6-Tcf7l2)F1 m 1.88 2.97   5 1.33 1.58 -0.07
(DDY x B6-Tcf7l2)F1 f 2.15 1.56   5 0.698 0.727 0.45, 4.02 0.24
(DDY x B6-Tcf7l2)F1 m 3.29 2.67   5 1.19 0.811 0.57
(FVB x B6-Tcf7l2)F1 f 1.46 1.48   4 0.739 1.02 0.45, 3.58 -0.21
(FVB x B6-Tcf7l2)F1 m 0.0629 0.166   7 0.0629 2.65 -0.9
(ILN x B6-Tcf7l2)F1 f 1.16 1.39   4 0.695 1.2 -0.4
(ILN x B6-Tcf7l2)F1 m 2.63 3.24   9 1.08 1.23 0.27
(KK x B6-Tcf7l2)F1 f 0.818 1.07   6 0.438 1.31 -0.62
(KK x B6-Tcf7l2)F1 m 0.15 0.26   3 0.15 1.73 -0.86
(LP x B6-Tcf7l2)F1 f 1.94 1.22   6 0.499 0.631 0.1
(LP x B6-Tcf7l2)F1 m 0.0 0.0   2   0.0 0.0 -0.93
(MA x B6-Tcf7l2)F1 f 1.34 1.64   5 0.732 1.22 -0.29
(MA x B6-Tcf7l2)F1 m 1.89 2.46   5 1.1 1.31 -0.07
(MRL x B6-Tcf7l2)F1 f 0.628 0.51   5 0.228 0.811 -0.75
(MRL x B6-Tcf7l2)F1 m 0.18 0.402   5 0.18 2.24 -0.84
(NOD x B6-Tcf7l2)F1 f 3.57 2.84   6 1.16 0.794 1.16
(NOD x B6-Tcf7l2)F1 m 2.31 1.81   7 0.684 0.782 0.13
(NON x B6-Tcf7l2)F1 f 1.09 1.18   7 0.446 1.08 -0.45
(NON x B6-Tcf7l2)F1 m 0.28 0.474   8 0.168 1.69 -0.8
(NZB x B6-Tcf7l2)F1 f 8.05 8.05   8 2.85 0.999 0.45, 24.6 4.06
(NZB x B6-Tcf7l2)F1 m 10.7 11.6   9 3.87 1.09 3.95
(NZW x B6-Tcf7l2)F1 f 0.783 0.426   4 0.213 0.544 0.45, 1.34 -0.65
(NZW x B6-Tcf7l2)F1 m 1.52 1.36   5 0.609 0.896 -0.23
(PL x B6-Tcf7l2)F1 f 2.9 2.33   6 0.949 0.801 0.72
(PL x B6-Tcf7l2)F1 m 0.372 0.493   4 0.246 1.32 -0.76
(RIII x B6-Tcf7l2)F1 f 1.93 2.75   6 1.12 1.42 0.1
(RIII x B6-Tcf7l2)F1 m 6.36 11.8   4 5.92 1.86 1.97
(SEA x B6-Tcf7l2)F1 f 0.628 0.244   5 0.109 0.388 0.45, 0.9 -0.75
(SEA x B6-Tcf7l2)F1 m 1.47 3.3   7 1.25 2.25 -0.26
(SJL x B6-Tcf7l2)F1 f 3.13 5.29   6 2.16 1.69 0.87
(SJL x B6-Tcf7l2)F1 m 3.48 2.23   4 1.12 0.64 0.45, 5.81 0.66
(SM x B6-Tcf7l2)F1 f 1.16 1.08   5 0.481 0.924 -0.4
(SM x B6-Tcf7l2)F1 m 2.15 3.56   5 1.59 1.66 0.05
(SWR x B6-Tcf7l2)F1 f 0.988 0.972   5 0.435 0.984 -0.51
(SWR x B6-Tcf7l2)F1 m 0.895 0.967   4 0.484 1.08 -0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Tcf7l2)F1 f 1.1933 1.5492 4.2441 -1.8575
(129S x B6-Tcf7l2)F1 m 1.878 1.6971 5.22 -1.464
(AJ x B6-Tcf7l2)F1 f 0.525 1.5492 3.5758 -2.5258
(AJ x B6-Tcf7l2)F1 m 1.7925 1.8974 5.5289 -1.9439
(B6 x B6-Tcf7l2)F1 f 4.1744 1.2649 6.6654 1.6835
(B6 x B6-Tcf7l2)F1 m 4.0478 1.2649 6.5387 1.5568
(BALB x B6-Tcf7l2)F1 f 2.056 1.6971 5.398 -1.286
(BALB x B6-Tcf7l2)F1 m 4.2425 1.8974 7.9789 0.5061
(BLKS x B6-Tcf7l2)F1 f 0.632 1.6971 3.974 -2.71
(BLKS x B6-Tcf7l2)F1 m 0.36 1.6971 3.702 -2.982
(BTBR x B6-Tcf7l2)F1 f 2.0867 1.5492 5.1375 -0.9641
(BTBR x B6-Tcf7l2)F1 m 0.358 1.6971 3.7 -2.984
(BUB x B6-Tcf7l2)F1 f 0.358 1.6971 3.7 -2.984
(BUB x B6-Tcf7l2)F1 m 2.5 1.6971 5.842 -0.842
(C3H x B6-Tcf7l2)F1 f 1.0214 1.4343 3.8459 -1.8031
(C3H x B6-Tcf7l2)F1 m 1.984 1.6971 5.326 -1.358
(C57L x B6-Tcf7l2)F1 f 0.0 1.8974 3.7364 -3.7364
(C57L x B6-Tcf7l2)F1 m 1.162 1.6971 4.504 -2.18
(C58 x B6-Tcf7l2)F1 f 2.68 1.8974 6.4164 -1.0564
(C58 x B6-Tcf7l2)F1 m 1.4525 1.8974 5.1889 -2.2839
(CBA x B6-Tcf7l2)F1 f 2.3475 1.8974 6.0839 -1.3889
(CBA x B6-Tcf7l2)F1 m 1.1933 1.5492 4.2441 -1.8575
(DBA x B6-Tcf7l2)F1 f 1.518 1.6971 4.86 -1.824
(DBA x B6-Tcf7l2)F1 m 1.878 1.6971 5.22 -1.464
(DDY x B6-Tcf7l2)F1 f 2.146 1.6971 5.488 -1.196
(DDY x B6-Tcf7l2)F1 m 3.29 1.6971 6.632 -0.052
(FVB x B6-Tcf7l2)F1 f 1.455 1.8974 5.1914 -2.2814
(FVB x B6-Tcf7l2)F1 m 0.0629 1.4343 2.8873 -2.7616
(ILN x B6-Tcf7l2)F1 f 1.1575 1.8974 4.8939 -2.5789
(ILN x B6-Tcf7l2)F1 m 2.6311 1.2649 5.1221 0.1402
(KK x B6-Tcf7l2)F1 f 0.8183 1.5492 3.8691 -2.2325
(KK x B6-Tcf7l2)F1 m 0.15 2.1909 4.4645 -4.1645
(LP x B6-Tcf7l2)F1 f 1.9367 1.5492 4.9875 -1.1141
(LP x B6-Tcf7l2)F1 m 0.0 2.6833 5.2841 -5.2841
(MA x B6-Tcf7l2)F1 f 1.338 1.6971 4.68 -2.004
(MA x B6-Tcf7l2)F1 m 1.888 1.6971 5.23 -1.454
(MRL x B6-Tcf7l2)F1 f 0.628 1.6971 3.97 -2.714
(MRL x B6-Tcf7l2)F1 m 0.18 1.6971 3.522 -3.162
(NOD x B6-Tcf7l2)F1 f 3.575 1.5492 6.6258 0.5242
(NOD x B6-Tcf7l2)F1 m 2.3143 1.4343 5.1388 -0.5102
(NON x B6-Tcf7l2)F1 f 1.0871 1.4343 3.9116 -1.7373
(NON x B6-Tcf7l2)F1 m 0.28 1.3416 2.9221 -2.3621
(NZB x B6-Tcf7l2)F1 f 8.0538 1.3416 10.6958 5.4117
(NZB x B6-Tcf7l2)F1 m 10.6722 1.2649 13.1632 8.1813
(NZW x B6-Tcf7l2)F1 f 0.7825 1.8974 4.5189 -2.9539
(NZW x B6-Tcf7l2)F1 m 1.52 1.6971 4.862 -1.822
(PL x B6-Tcf7l2)F1 f 2.9033 1.5492 5.9541 -0.1475
(PL x B6-Tcf7l2)F1 m 0.3725 1.8974 4.1089 -3.3639
(RIII x B6-Tcf7l2)F1 f 1.935 1.5492 4.9858 -1.1158
(RIII x B6-Tcf7l2)F1 m 6.3625 1.8974 10.0989 2.6261
(SEA x B6-Tcf7l2)F1 f 0.628 1.6971 3.97 -2.714
(SEA x B6-Tcf7l2)F1 m 1.4686 1.4343 4.2931 -1.3559
(SJL x B6-Tcf7l2)F1 f 3.1267 1.5492 6.1775 0.0759
(SJL x B6-Tcf7l2)F1 m 3.485 1.8974 7.2214 -0.2514
(SM x B6-Tcf7l2)F1 f 1.164 1.6971 4.506 -2.178
(SM x B6-Tcf7l2)F1 m 2.15 1.6971 5.492 -1.192
(SWR x B6-Tcf7l2)F1 f 0.988 1.6971 4.33 -2.354
(SWR x B6-Tcf7l2)F1 m 0.895 1.8974 4.6314 -2.8414


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Tcf7l2)F1 both 1.5357 1.1489 3.7982 -0.7269
(AJ x B6-Tcf7l2)F1 both 1.1588 1.2247 3.5706 -1.2531
(B6 x B6-Tcf7l2)F1 both 4.1111 0.8944 5.8725 2.3497
(BALB x B6-Tcf7l2)F1 both 3.1492 1.2728 5.6557 0.6428
(BLKS x B6-Tcf7l2)F1 both 0.496 1.2 2.8591 -1.8671
(BTBR x B6-Tcf7l2)F1 both 1.2223 1.1489 3.4849 -1.0402
(BUB x B6-Tcf7l2)F1 both 1.429 1.2 3.7921 -0.9341
(C3H x B6-Tcf7l2)F1 both 1.5027 1.111 3.6905 -0.6851
(C57L x B6-Tcf7l2)F1 both 0.581 1.2728 3.0875 -1.9255
(C58 x B6-Tcf7l2)F1 both 2.0663 1.3416 4.7083 -0.5758
(CBA x B6-Tcf7l2)F1 both 1.7704 1.2247 4.1823 -0.6414
(DBA x B6-Tcf7l2)F1 both 1.698 1.2 4.0611 -0.6651
(DDY x B6-Tcf7l2)F1 both 2.718 1.2 5.0811 0.3549
(FVB x B6-Tcf7l2)F1 both 0.7589 1.1892 3.1009 -1.583
(ILN x B6-Tcf7l2)F1 both 1.8943 1.1402 4.1396 -0.351
(KK x B6-Tcf7l2)F1 both 0.4842 1.3416 3.1262 -2.1579
(LP x B6-Tcf7l2)F1 both 0.9683 1.5492 4.0191 -2.0825
(MA x B6-Tcf7l2)F1 both 1.613 1.2 3.9761 -0.7501
(MRL x B6-Tcf7l2)F1 both 0.404 1.2 2.7671 -1.9591
(NOD x B6-Tcf7l2)F1 both 2.9446 1.0556 5.0234 0.8659
(NON x B6-Tcf7l2)F1 both 0.6836 0.982 2.6174 -1.2502
(NZB x B6-Tcf7l2)F1 both 9.363 0.922 11.1786 7.5474
(NZW x B6-Tcf7l2)F1 both 1.1512 1.2728 3.6577 -1.3552
(PL x B6-Tcf7l2)F1 both 1.6379 1.2247 4.0498 -0.7739
(RIII x B6-Tcf7l2)F1 both 4.1487 1.2247 6.5606 1.7369
(SEA x B6-Tcf7l2)F1 both 1.0483 1.111 3.2361 -1.1395
(SJL x B6-Tcf7l2)F1 both 3.3058 1.2247 5.7177 0.894
(SM x B6-Tcf7l2)F1 both 1.657 1.2 4.0201 -0.7061
(SWR x B6-Tcf7l2)F1 both 0.9415 1.2728 3.448 -1.565




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA