Project measure / variable:   GMC18   FATmass_wholebody

ID, description, units MPD:56732   FATmass_wholebody   fat tissue mass, whole body including head   [g]  
Data set, strains GMC18   inbred w/CC8   7 strains     sex: both     age: 17-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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GMC18 - fat tissue mass, whole body including head



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested6 strains7 strains
Mean of the strain means7.44   g 6.91   g
Median of the strain means2.09   g 3.33   g
SD of the strain means± 13.4 ± 11.8
Coefficient of variation (CV)1.80 1.71
Min–max range of strain means1.03   –   34.7   g 0.0760   –   33.4   g
Mean sample size per strain11.7   mice 11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4937 0.4937 0.0299 0.8629
strain 4 24274.4261 6068.6065 368.0588 < 0.0001
sex:strain 4 67.6264 16.9066 1.0254 0.3966
Residuals 136 2242.3875 16.4881


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.32 1.16   15 0.298 0.498 0.261, 4.15 -0.38
129S1/SvImJ m 4.96 2.42   16 0.606 0.489 1.56, 8.56 -0.17
A/J f 3.01 1.45   15 0.374 0.483 0.469, 5.67 -0.33
A/J m 3.4 2.16   14 0.578 0.635 0.335, 6.94 -0.3
C57BL/6J f 1.87 0.951   11 0.287 0.509 0.054, 3.43 -0.42
C57BL/6J m 3.33 1.76   15 0.455 0.529 1.1, 7.01 -0.3
CAST/EiJ m 1.05 0.535   3 0.309 0.511 0.675, 1.66 -0.5
NOD/ShiLtJ f 1.7 1.29   12 0.372 0.759 0.551, 4.46 -0.43
NOD/ShiLtJ m 2.18 1.15   16 0.287 0.527 0.4, 4.86 -0.4
NZO/HlLtJ f 34.7 3.75   16 0.938 0.108 27.0, 43.0 2.04
NZO/HlLtJ m 33.4 10.8   16 2.7 0.323 6.17, 46.0 2.25
WSB/EiJ f 1.03 0.0   1   0.0 0.0 1.03, 1.03 -0.48
WSB/EiJ m 0.076 0.0   1   0.0 0.0 0.076, 0.076 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.3188 1.0484 4.3921 0.2455
129S1/SvImJ m 4.962 1.0151 6.9695 2.9545
A/J f 3.0055 1.0484 5.0788 0.9321
A/J m 3.4043 1.0852 5.5504 1.2582
C57BL/6J f 1.8681 1.2243 4.2892 -0.553
C57BL/6J m 3.3325 1.0484 5.4058 1.2591
NOD/ShiLtJ f 1.6956 1.1722 4.0136 -0.6225
NOD/ShiLtJ m 2.1751 1.0151 4.1826 0.1676
NZO/HlLtJ f 34.7219 1.0151 36.7294 32.7144
NZO/HlLtJ m 33.3696 1.0151 35.3771 31.3621


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.6404 0.7297 5.0834 2.1974
A/J both 3.2049 0.7545 4.6969 1.7129
C57BL/6J both 2.6003 0.8059 4.1941 1.0065
NOD/ShiLtJ both 1.9354 0.7753 3.4686 0.4021
NZO/HlLtJ both 34.0457 0.7178 35.4652 32.6262




  GWAS USING LINEAR MIXED MODELS