Project measure / variable:   GMC18   SOFTmass_Xhead

ID, description, units MPD:56723   SOFTmass_Xhead   total soft tissue mass, without head   [g]  
Data set, strains GMC18   inbred w/CC8   7 strains     sex: both     age: 17-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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GMC18 - total soft tissue mass, without head



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested6 strains7 strains
Mean of the strain means21.8   g 24.3   g
Median of the strain means17.5   g 22.1   g
SD of the strain means± 11.5 ± 11.2
Coefficient of variation (CV)0.525 0.464
Min–max range of strain means15.1   –   45.1   g 14.5   –   47.7   g
Mean sample size per strain13.8   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1018.1182 1018.1182 118.199 < 0.0001
strain 4 17549.5276 4387.3819 509.3556 < 0.0001
sex:strain 4 127.65 31.9125 3.7049 0.0066
Residuals 152 1309.2662 8.6136


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 17.5 1.55   16 0.387 0.0884 14.3, 20.3 -0.38
129S1/SvImJ m 22.1 2.31   16 0.577 0.104 19.2, 26.8 -0.19
A/J f 16.7 1.06   16 0.265 0.0633 15.0, 19.0 -0.45
A/J m 20.3 1.29   16 0.323 0.0636 18.4, 23.2 -0.35
C57BL/6J f 17.5 1.3   16 0.326 0.0747 15.7, 19.9 -0.38
C57BL/6J m 24.8 1.35   16 0.337 0.0542 22.8, 27.0 0.05
CAST/EiJ m 14.5 0.533   4 0.266 0.0368 13.9, 15.2 -0.87
NOD/ShiLtJ f 19.2 2.24   18 0.529 0.117 14.0, 22.2 -0.23
NOD/ShiLtJ m 25.7 2.2   16 0.549 0.0855 23.5, 30.6 0.13
NZO/HlLtJ f 45.1 3.59   16 0.898 0.0796 38.9, 52.8 2.03
NZO/HlLtJ m 47.7 7.06   16 1.76 0.148 31.6, 57.1 2.08
WSB/EiJ f 15.1 0.0   1   0.0 0.0 15.1, 15.1 -0.59
WSB/EiJ m 14.7 0.345   3 0.199 0.0234 14.4, 15.1 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 17.5102 0.7337 18.9598 16.0606
129S1/SvImJ m 22.1157 0.7337 23.5653 20.6661
A/J f 16.727 0.7337 18.1766 15.2774
A/J m 20.2919 0.7337 21.7415 18.8423
C57BL/6J f 17.4603 0.7337 18.9099 16.0107
C57BL/6J m 24.8463 0.7337 26.2959 23.3966
NOD/ShiLtJ f 19.2473 0.6918 20.614 17.8806
NOD/ShiLtJ m 25.696 0.7337 27.1456 24.2464
NZO/HlLtJ f 45.1465 0.7337 46.5961 43.6969
NZO/HlLtJ m 47.7284 0.7337 49.178 46.2788


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 19.8129 0.5188 20.838 18.7879
A/J both 18.5094 0.5188 19.5345 17.4844
C57BL/6J both 21.1533 0.5188 22.1783 20.1283
NOD/ShiLtJ both 22.4716 0.5042 23.4678 21.4755
NZO/HlLtJ both 46.4374 0.5188 47.4625 45.4124




  GWAS USING LINEAR MIXED MODELS