Project measure / variable:   GMC18   FATmass_Xhead

ID, description, units MPD:56721   FATmass_Xhead   fat tissue mass, without head   [g]  
Data set, strains GMC18   inbred w/CC8   7 strains     sex: both     age: 17-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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GMC18 - fat tissue mass, without head



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested6 strains7 strains
Mean of the strain means6.83   g 6.31   g
Median of the strain means1.81   g 2.96   g
SD of the strain means± 12.5 ± 10.9
Coefficient of variation (CV)1.83 1.73
Min–max range of strain means0.898   –   32.3   g 0.0650   –   30.9   g
Mean sample size per strain11.7   mice 11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0593 1.0593 0.0738 0.7864
strain 4 21054.1437 5263.5359 366.4708 < 0.0001
sex:strain 4 60.1633 15.0408 1.0472 0.3853
Residuals 136 1953.3368 14.3628


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.01 1.01   15 0.261 0.502 0.228, 3.62 -0.39
129S1/SvImJ m 4.39 2.1   16 0.525 0.479 1.35, 7.51 -0.18
A/J f 2.69 1.29   15 0.332 0.478 0.415, 4.98 -0.33
A/J m 3.01 1.91   14 0.511 0.636 0.294, 6.21 -0.3
C57BL/6J f 1.62 0.83   11 0.25 0.511 0.048, 3.0 -0.42
C57BL/6J m 2.96 1.57   15 0.406 0.531 0.975, 6.3 -0.31
CAST/EiJ m 0.908 0.462   3 0.267 0.509 0.592, 1.44 -0.49
NOD/ShiLtJ f 1.48 1.13   12 0.326 0.762 0.482, 3.9 -0.43
NOD/ShiLtJ m 1.92 1.02   16 0.254 0.528 0.346, 4.31 -0.4
NZO/HlLtJ f 32.3 3.65   16 0.913 0.113 24.8, 40.3 2.04
NZO/HlLtJ m 30.9 10.1   16 2.53 0.327 5.61, 42.9 2.25
WSB/EiJ f 0.898 0.0   1   0.0 0.0 0.898, 0.898 -0.48
WSB/EiJ m 0.065 0.0   1   0.0 0.0 0.065, 0.065 -0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.0126 0.9785 3.9477 0.0775
129S1/SvImJ m 4.3862 0.9475 6.2598 2.5125
A/J f 2.6895 0.9785 4.6246 0.7544
A/J m 3.0079 1.0129 5.0109 1.0048
C57BL/6J f 1.6242 1.1427 3.8839 -0.6355
C57BL/6J m 2.9572 0.9785 4.8923 1.0221
NOD/ShiLtJ f 1.4798 1.094 3.6433 -0.6837
NOD/ShiLtJ m 1.9229 0.9475 3.7966 0.0493
NZO/HlLtJ f 32.2652 0.9475 34.1388 30.3915
NZO/HlLtJ m 30.8756 0.9475 32.7492 29.0019


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.1994 0.681 4.5462 1.8526
A/J both 2.8487 0.7042 4.2412 1.4561
C57BL/6J both 2.2907 0.7522 3.7782 0.8032
NOD/ShiLtJ both 1.7014 0.7236 3.1324 0.2704
NZO/HlLtJ both 31.5704 0.67 32.8952 30.2455




  GWAS USING LINEAR MIXED MODELS