Project measure / variable:   GMC18   body_size

ID, description, units MPD:56711   body_size   body size (1=small, 2=normal, 3=big)   [designation]  
Data set, strains GMC18   inbred w/CC8   8 strains     sex: both     age: 17-18wks
Procedure body size and weight
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  STRAIN COMPARISON PLOT
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GMC18 - body size (1=small, 2=normal, 3=big)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains7 strains
Mean of the strain means1.60   designation 1.91   designation
Median of the strain means1.44   designation 2.00   designation
SD of the strain means± 0.652 ± 0.621
Coefficient of variation (CV)0.407 0.326
Min–max range of strain means1.00   –   2.92   designation 1.00   –   3.00   designation
Mean sample size per strain11.6   mice 12.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.7048 3.7048 37.0115 < 0.0001
strain 6 47.0703 7.8451 78.3725 < 0.0001
sex:strain 6 3.1861 0.531 5.3048 < 0.0001
Residuals 166 16.6165 0.1001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.94 0.25   16 0.0625 0.129 1.0, 2.0 0.52
129S1/SvImJ m 2.0 0.0   16 0.0 0.0 2.0, 2.0 0.15
A/J f 1.12 0.342   16 0.0854 0.304 1.0, 2.0 -0.74
A/J m 1.81 0.403   16 0.101 0.222 1.0, 2.0 -0.16
C57BL/6J f 1.44 0.512   16 0.128 0.356 1.0, 2.0 -0.25
C57BL/6J m 2.0 0.0   16 0.0 0.0 2.0, 2.0 0.15
CAST/EiJ f 1.44 0.527   9 0.176 0.365 1.0, 2.0 -0.25
CAST/EiJ m 1.43 0.535   7 0.202 0.374 1.0, 2.0 -0.77
NOD/ShiLtJ f 1.94 0.236   18 0.0556 0.121 1.0, 2.0 0.52
NOD/ShiLtJ m 2.12 0.342   16 0.0854 0.161 2.0, 3.0 0.34
NZO/HlLtJ f 2.92 0.277   13 0.0769 0.0949 2.0, 3.0 2.02
NZO/HlLtJ m 3.0 0.0   14 0.0 0.0 3.0, 3.0 1.76
PWK/PhJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 -0.92
WSB/EiJ f 1.0 0.0   3 0.0 0.0 1.0, 1.0 -0.92
WSB/EiJ m 1.0 0.0   4 0.0 0.0 1.0, 1.0 -1.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.9375 0.0791 2.0937 1.7813
129S1/SvImJ m 2.0 0.0791 2.1562 1.8438
A/J f 1.125 0.0791 1.2812 0.9688
A/J m 1.8125 0.0791 1.9687 1.6563
C57BL/6J f 1.4375 0.0791 1.5937 1.2813
C57BL/6J m 2.0 0.0791 2.1562 1.8438
CAST/EiJ f 1.4444 0.1055 1.6527 1.2362
CAST/EiJ m 1.4286 0.1196 1.6647 1.1925
NOD/ShiLtJ f 1.9444 0.0746 2.0917 1.7972
NOD/ShiLtJ m 2.125 0.0791 2.2812 1.9688
NZO/HlLtJ f 2.9231 0.0877 3.0963 2.7498
NZO/HlLtJ m 3.0 0.0846 3.1669 2.8331
WSB/EiJ f 1.0 0.1827 1.3606 0.6394
WSB/EiJ m 1.0 0.1582 1.3123 0.6877


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.9688 0.0559 2.0792 1.8583
A/J both 1.4688 0.0559 1.5792 1.3583
C57BL/6J both 1.7188 0.0559 1.8292 1.6083
CAST/EiJ both 1.4365 0.0797 1.5939 1.2791
NOD/ShiLtJ both 2.0347 0.0544 2.142 1.9274
NZO/HlLtJ both 2.9615 0.0609 3.0818 2.8412
WSB/EiJ both 1.0 0.1208 1.2385 0.7615




  GWAS USING LINEAR MIXED MODELS