Project measure / variable:   GMC16   phosphate_17

ID, description, units MPD:56520   phosphate_17   phosphorus (plasma phosphate)   [mmol/L]  at age 16-17wks  
Data set, strains GMC16   inbred w/CC8   7 strains     sex: both     age: 16-17wks
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  STRAIN COMPARISON PLOT
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GMC16 - phosphorus (plasma phosphate) at age 16-17wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested6 strains7 strains
Mean of the strain means1.69   mmol/L 1.46   mmol/L
Median of the strain means1.73   mmol/L 1.40   mmol/L
SD of the strain means± 0.308 ± 0.353
Coefficient of variation (CV)0.182 0.242
Min–max range of strain means1.32   –   2.02   mmol/L 0.900   –   1.97   mmol/L
Mean sample size per strain3.5   mice 3.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.144 0.144 1.5681 0.2202
strain 4 3.0285 0.7571 8.2446 0.0001
sex:strain 4 0.1035 0.0259 0.2818 0.8875
Residuals 30 2.755 0.0918


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.32 0.126   4 0.0629 0.095 1.2, 1.5 -1.19
129S1/SvImJ m 1.35 0.191   4 0.0957 0.142 1.2, 1.6 -0.32
A/J f 1.95 0.351   4 0.176 0.18 1.6, 2.3 0.86
A/J m 1.68 0.15   4 0.075 0.0896 1.5, 1.8 0.62
C57BL/6J f 2.02 0.492   4 0.246 0.243 1.4, 2.6 1.08
C57BL/6J m 1.97 0.275   4 0.138 0.139 1.7, 2.3 1.44
NOD/ShiLtJ f 1.38 0.492   4 0.246 0.358 1.0, 2.1 -1.0
NOD/ShiLtJ m 1.23 0.15   4 0.075 0.122 1.1, 1.4 -0.66
NZO/HlLtJ f 1.55 0.1   4 0.05 0.0645 1.4, 1.6 -0.44
NZO/HlLtJ m 1.4 0.356   4 0.178 0.254 1.1, 1.9 -0.17
PWK/PhJ m 0.9 0.0   1   0.0 0.0 0.9, 0.9 -1.59
WSB/EiJ f 1.9 0.0   1   0.0 0.0 1.9, 1.9 0.69
WSB/EiJ m 1.7 0.361   3 0.208 0.212 1.3, 2.0 0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.325 0.1515 1.6344 1.0156
129S1/SvImJ m 1.35 0.1515 1.6594 1.0406
A/J f 1.95 0.1515 2.2594 1.6406
A/J m 1.675 0.1515 1.9844 1.3656
C57BL/6J f 2.025 0.1515 2.3344 1.7156
C57BL/6J m 1.975 0.1515 2.2844 1.6656
NOD/ShiLtJ f 1.375 0.1515 1.6844 1.0656
NOD/ShiLtJ m 1.225 0.1515 1.5344 0.9156
NZO/HlLtJ f 1.55 0.1515 1.8594 1.2406
NZO/HlLtJ m 1.4 0.1515 1.7094 1.0906


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.3375 0.1071 1.5563 1.1187
A/J both 1.8125 0.1071 2.0313 1.5937
C57BL/6J both 2.0 0.1071 2.2188 1.7812
NOD/ShiLtJ both 1.3 0.1071 1.5188 1.0812
NZO/HlLtJ both 1.475 0.1071 1.6938 1.2562




  GWAS USING LINEAR MIXED MODELS