Project measure / variable:   GMC10   lean_19wk

ID, description, units MPD:55922   lean_19wk   lean tissue mass, whole body with head (NMR)   [g]  at age 18-19wks  
Data set, strains GMC10   inbred w/CC8   8 strains     sex: both     age: 18-19wks
Procedure NMR
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  STRAIN COMPARISON PLOT
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GMC10 - lean tissue mass, whole body with head (NMR) at age 18-19wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means13.7   g 17.0   g
Median of the strain means13.1   g 16.4   g
SD of the strain means± 4.89 ± 4.82
Coefficient of variation (CV)0.357 0.283
Min–max range of strain means9.21   –   24.8   g 11.7   –   26.2   g
Mean sample size per strain16.1   mice 15.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 580.5071 580.5071 287.7625 < 0.0001
strain 7 4518.3865 645.4838 319.972 < 0.0001
sex:strain 7 125.875 17.9821 8.9139 < 0.0001
Residuals 234 472.0513 2.0173


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.6 0.805   16 0.201 0.0593 12.1, 15.1 -0.02
129S1/SvImJ m 16.9 1.69   16 0.422 0.1 15.0, 20.6 -0.03
A/J f 12.5 0.668   16 0.167 0.0537 11.6, 13.5 -0.24
A/J m 15.8 0.711   16 0.178 0.0451 14.4, 17.1 -0.25
C57BL/6J f 14.1 0.816   16 0.204 0.058 13.1, 15.8 0.09
C57BL/6J m 19.5 0.993   16 0.248 0.0508 18.0, 21.2 0.51
CAST/EiJ f 9.21 0.458   17 0.111 0.0497 8.6, 10.3 -0.91
CAST/EiJ m 11.7 0.586   16 0.146 0.0501 10.8, 13.0 -1.11
NOD/ShiLtJ f 14.3 2.54   17 0.616 0.177 8.2, 17.6 0.13
NOD/ShiLtJ m 20.1 1.49   16 0.373 0.0741 18.1, 22.9 0.64
NZO/HlLtJ f 24.8 1.15   15 0.297 0.0463 22.9, 26.7 2.28
NZO/HlLtJ m 26.2 3.99   10 1.26 0.152 18.0, 29.5 1.91
PWK/PhJ f 11.1 0.685   16 0.171 0.0619 9.8, 12.1 -0.53
PWK/PhJ m 13.4 1.11   15 0.287 0.0831 11.6, 15.6 -0.75
WSB/EiJ f 9.82 1.72   16 0.429 0.175 7.9, 13.1 -0.79
WSB/EiJ m 12.6 0.581   16 0.145 0.0461 11.7, 13.6 -0.92


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 13.5625 0.3551 14.2621 12.8629
129S1/SvImJ m 16.85 0.3551 17.5496 16.1504
A/J f 12.45 0.3551 13.1496 11.7504
A/J m 15.7625 0.3551 16.4621 15.0629
C57BL/6J f 14.0562 0.3551 14.7558 13.3567
C57BL/6J m 19.5312 0.3551 20.2308 18.8317
CAST/EiJ f 9.2118 0.3445 9.8904 8.5331
CAST/EiJ m 11.6937 0.3551 12.3933 10.9942
NOD/ShiLtJ f 14.3 0.3445 14.9787 13.6213
NOD/ShiLtJ m 20.1187 0.3551 20.8183 19.4192
NZO/HlLtJ f 24.8133 0.3667 25.5358 24.0908
NZO/HlLtJ m 26.21 0.4491 27.0949 25.3251
PWK/PhJ f 11.0625 0.3551 11.7621 10.3629
PWK/PhJ m 13.3867 0.3667 14.1092 12.6642
WSB/EiJ f 9.825 0.3551 10.5246 9.1254
WSB/EiJ m 12.6 0.3551 13.2996 11.9004


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.2062 0.2511 15.7009 14.7116
A/J both 14.1062 0.2511 14.6009 13.6116
C57BL/6J both 16.7937 0.2511 17.2884 16.2991
CAST/EiJ both 10.4528 0.2474 10.9401 9.9654
NOD/ShiLtJ both 17.2094 0.2474 17.6967 16.722
NZO/HlLtJ both 25.5117 0.2899 26.0829 24.9405
PWK/PhJ both 12.2246 0.2552 12.7274 11.7217
WSB/EiJ both 11.2125 0.2511 11.7072 10.7178




  GWAS USING LINEAR MIXED MODELS