Project measure / variable:   GMC10   fat_19wk

ID, description, units MPD:55912   fat_19wk   fat tissue mass, whole body with head (NMR)   [g]  at age 18-19wks  
Data set, strains GMC10   inbred w/CC8   8 strains     sex: both     age: 18-19wks
Procedure NMR
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  STRAIN COMPARISON PLOT
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GMC10 - fat tissue mass, whole body with head (NMR) at age 18-19wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means7.20   g 7.32   g
Median of the strain means5.36   g 6.28   g
SD of the strain means± 7.22 ± 5.06
Coefficient of variation (CV)1.00 0.691
Min–max range of strain means2.77   –   24.8   g 3.24   –   19.4   g
Mean sample size per strain16.1   mice 15.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.0266 5.0266 3.0251 0.0833
strain 7 7283.1362 1040.448 626.1588 < 0.0001
sex:strain 7 220.5171 31.5024 18.9587 < 0.0001
Residuals 234 388.8228 1.6616


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.55 0.57   16 0.143 0.103 4.6, 6.3 -0.23
129S1/SvImJ m 6.87 0.65   16 0.162 0.0946 5.7, 7.9 -0.09
A/J f 5.43 0.545   16 0.136 0.1 4.6, 6.7 -0.24
A/J m 5.9 0.711   16 0.178 0.12 5.1, 7.5 -0.28
C57BL/6J f 5.29 0.759   16 0.19 0.143 4.4, 6.8 -0.26
C57BL/6J m 6.71 0.704   16 0.176 0.105 5.8, 8.3 -0.12
CAST/EiJ f 2.77 0.459   17 0.111 0.166 2.1, 3.6 -0.61
CAST/EiJ m 3.97 0.557   16 0.139 0.14 2.9, 5.3 -0.66
NOD/ShiLtJ f 6.06 0.872   17 0.212 0.144 4.8, 8.1 -0.16
NOD/ShiLtJ m 6.66 0.491   16 0.123 0.0737 5.7, 7.3 -0.13
NZO/HlLtJ f 24.8 2.32   15 0.599 0.0936 19.8, 27.6 2.44
NZO/HlLtJ m 19.4 4.94   10 1.56 0.254 11.2, 27.2 2.39
PWK/PhJ f 4.89 0.717   16 0.179 0.146 3.2, 6.1 -0.32
PWK/PhJ m 5.81 1.16   15 0.3 0.2 4.0, 7.7 -0.3
WSB/EiJ f 2.8 0.418   16 0.104 0.149 2.1, 3.6 -0.61
WSB/EiJ m 3.24 0.299   16 0.0747 0.0922 2.4, 3.7 -0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.55 0.3223 6.1849 4.9151
129S1/SvImJ m 6.8687 0.3223 7.5037 6.2338
A/J f 5.4312 0.3223 6.0662 4.7963
A/J m 5.9 0.3223 6.5349 5.2651
C57BL/6J f 5.2937 0.3223 5.9287 4.6588
C57BL/6J m 6.7125 0.3223 7.3474 6.0776
CAST/EiJ f 2.7706 0.3126 3.3865 2.1546
CAST/EiJ m 3.9687 0.3223 4.6037 3.3338
NOD/ShiLtJ f 6.0647 0.3126 6.6807 5.4488
NOD/ShiLtJ m 6.6625 0.3223 7.2974 6.0276
NZO/HlLtJ f 24.8 0.3328 25.4557 24.1443
NZO/HlLtJ m 19.45 0.4076 20.2531 18.6469
PWK/PhJ f 4.8937 0.3223 5.5287 4.2588
PWK/PhJ m 5.8067 0.3328 6.4624 5.1509
WSB/EiJ f 2.8 0.3223 3.4349 2.1651
WSB/EiJ m 3.2375 0.3223 3.8724 2.6026


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.2094 0.2279 6.6583 5.7604
A/J both 5.6656 0.2279 6.1146 5.2167
C57BL/6J both 6.0031 0.2279 6.4521 5.5542
CAST/EiJ both 3.3697 0.2245 3.812 2.9274
NOD/ShiLtJ both 6.3636 0.2245 6.8059 5.9213
NZO/HlLtJ both 22.125 0.2631 22.6434 21.6066
PWK/PhJ both 5.3502 0.2316 5.8066 4.8938
WSB/EiJ both 3.0187 0.2279 3.4677 2.5698




  GWAS USING LINEAR MIXED MODELS