Project measure / variable:   GMC09   breaks_Z_mean

ID, description, units MPD:55856   breaks_Z_mean   mean rearing movement on Z-axis, 21 h test, 15 min bins   [n]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
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  STRAIN COMPARISON PLOT
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GMC09 - mean rearing movement on Z-axis, 21 h test, 15 min bins



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means128   n 105   n
Median of the strain means129   n 114   n
SD of the strain means± 84.3 ± 61.0
Coefficient of variation (CV)0.660 0.584
Min–max range of strain means5.96   –   231   n 5.40   –   187   n
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 51728.9061 51728.9061 7.1003 0.0082
strain 7 1165180.6701 166454.3814 22.8476 < 0.0001
sex:strain 7 106373.8992 15196.2713 2.0858 0.0455
Residuals 255 1857782.6156 7285.422


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.96 5.26   16 1.32 0.883 0.2, 22.3 -1.44
129S1/SvImJ m 5.4 7.42   16 1.86 1.37 0.3, 24.6 -1.62
A/J f 52.8 15.7   16 3.93 0.298 23.4, 84.7 -0.89
A/J m 63.6 17.1   16 4.28 0.269 44.3, 101.0 -0.67
C57BL/6J f 119.0 38.6   16 9.66 0.325 70.6, 218.0 -0.1
C57BL/6J m 129.0 92.4   16 23.1 0.718 54.0, 396.0 0.4
CAST/EiJ f 231.0 147.0   19 33.7 0.636 76.8, 557.0 1.23
CAST/EiJ m 187.0 64.3   14 17.2 0.343 109.0, 305.0 1.35
NOD/ShiLtJ f 215.0 158.0   18 37.3 0.736 89.2, 596.0 1.04
NOD/ShiLtJ m 151.0 108.0   16 26.9 0.711 43.4, 440.0 0.76
NZO/HlLtJ f 56.1 48.4   17 11.7 0.864 25.8, 236.0 -0.85
NZO/HlLtJ m 50.4 46.0   17 11.2 0.912 21.9, 216.0 -0.89
PWK/PhJ f 139.0 43.1   20 9.65 0.31 81.1, 262.0 0.13
PWK/PhJ m 150.0 52.2   20 11.7 0.349 75.0, 312.0 0.74
WSB/EiJ f 203.0 165.0   18 38.9 0.813 43.0, 570.0 0.89
WSB/EiJ m 100.0 49.3   16 12.3 0.491 40.7, 220.0 -0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.9562 21.3387 47.9787 -36.0662
129S1/SvImJ m 5.4 21.3387 47.4225 -36.6225
A/J f 52.8 21.3387 94.8225 10.7775
A/J m 63.6125 21.3387 105.635 21.59
C57BL/6J f 118.7562 21.3387 160.7787 76.7338
C57BL/6J m 128.65 21.3387 170.6725 86.6275
CAST/EiJ f 230.7737 19.5817 269.3361 192.2112
CAST/EiJ m 187.4071 22.812 232.3311 142.4832
NOD/ShiLtJ f 214.8389 20.1183 254.4581 175.2197
NOD/ShiLtJ m 151.4625 21.3387 193.485 109.44
NZO/HlLtJ f 56.0529 20.7016 96.8207 15.2852
NZO/HlLtJ m 50.4412 20.7016 91.209 9.6734
PWK/PhJ f 139.155 19.0859 176.741 101.569
PWK/PhJ m 149.815 19.0859 187.401 112.229
WSB/EiJ f 202.9 20.1183 242.5192 163.2808
WSB/EiJ m 100.4312 21.3387 142.4537 58.4088


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.6781 15.0887 35.3925 -24.0362
A/J both 58.2062 15.0887 87.9206 28.4919
C57BL/6J both 123.7031 15.0887 153.4175 93.9888
CAST/EiJ both 209.0904 15.0319 238.6929 179.488
NOD/ShiLtJ both 183.1507 14.6636 212.0279 154.2735
NZO/HlLtJ both 53.2471 14.6382 82.0742 24.4199
PWK/PhJ both 144.485 13.4958 171.0623 117.9077
WSB/EiJ both 151.6656 14.6636 180.5428 122.7884




  GWAS USING LINEAR MIXED MODELS